Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

I. Andricioaei · SciRah

Researcher profile · Semantic Scholar

I. Andricioaei

Share profile

I. Andricioaei — researcher profile on SciRah

h-index: 32
Works: 140
Citations: 3,802

Most-cited papers

Transient Hoogsteen Base Pairs in Canonical Duplex DNA
E. Nikolova, Eunae Kim, Abigail Wise, P. O'Brien +2 more
2011Nature343 citations Open access
Semantic Scholar
Discovery of Selective Bioactive Small Molecules by Targeting an RNA Dynamic Ensemble
A. Stelzer, A. Frank, J. Kratz, M. Swanson +5 more
2011Nature Chemical Biology269 citations Open access
Semantic Scholar
Membrane Protein Structure, Function and Dynamics: A Perspective from Experiments and Theory
Z. Cournia, T. Allen, I. Andricioaei, B. Antonny +25 more
2015Journal of Membrane Biology190 citations Open access
Semantic Scholar
Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition
A. Frank, A. Stelzer, H. Al-Hashimi, I. Andricioaei
2009Nucleic Acids Research116 citations Open access
Semantic Scholar
m1A and m1G Potently Disrupt A-RNA Structure Due to the Intrinsic Instability of Hoogsteen Base Pairs
Huiqing Zhou, Isaac J. Kimsey, E. Nikolova, Bharathwaj Sathyamoorthy +7 more
2016Nature Structural &Molecular Biology107 citations Open access
Semantic Scholar
A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Inter-helical Motions Revealed
Loïc Salmon, Gavin D. Bascom, I. Andricioaei, H. Al-Hashimi
2013Journal of the American Chemical Society95 citations Open access
Semantic Scholar
Distant residues modulate conformational opening in SARS-CoV-2 spike protein
Dhiman Ray, L. Le, I. Andricioaei
2020Proceedings of the National Academy of Sciences of the United States of America88 citations Open access
Semantic Scholar
Modulation of Hoogsteen dynamics on DNA recognition
Yu Xu, James P. McSally, I. Andricioaei, H. Al-Hashimi
2018Nature Communications50 citations Open access
Semantic Scholar
Probing Sequence-specific DNA Flexibility in A-tracts and Pyrimidine-purine Steps by NMR 13C Relaxation and MD Simulations
E. Nikolova, Gavin D. Bascom, I. Andricioaei, H. Al-Hashimi
2012Biochemistry41 citations Open access
Semantic Scholar
Markovian Weighted Ensemble Milestoning (M-WEM): Long-time Kinetics from Short Trajectories
Dhiman Ray, S. E. Stone, I. Andricioaei
2021bioRxiv40 citations Open access
Semantic Scholar
How the phage T4 injection machinery works including energetics, forces, and dynamic pathway
A. Maghsoodi, Anupam Chatterjee, I. Andricioaei, N. Perkins
2019Proceedings of the National Academy of Sciences of the United States of America39 citations Open access
Semantic Scholar
Weighted ensemble milestoning (WEM): A combined approach for rare event simulations.
Dhiman Ray, I. Andricioaei
2019Journal of Chemical Physics36 citations Open access
Semantic Scholar
Utility of 1H NMR Chemical Shifts in Determining RNA Structure and Dynamics
A. Frank, S. Horowitz, I. Andricioaei, H. Al-Hashimi
2013Journal of Physical Chemistry B28 citations Open access
Semantic Scholar
A multiscale dynamic model of DNA supercoil relaxation by topoisomerase IB.
Todd D. Lillian, M. Taranova, Jeff Wereszczynski, I. Andricioaei +1 more
2011Biophysical Journal28 citations Open access
Semantic Scholar
Surface Orientation of Magainin 2: Molecular Dynamics Simulation and Sum Frequency Generation Vibrational Spectroscopic Studies
Andrew P. Boughton, I. Andricioaei, Zhan Chen
2010Langmuir27 citations Open access
Semantic Scholar
Attractive Hydration Forces in DNA-Dendrimer Interactions on the Nanometer Scale
Maria Mills, B. Orr, M. Banaszak Holl, I. Andricioaei
2013Journal of Physical Chemistry B26 citations Open access
Semantic Scholar
A referencing strategy for the direct comparison of NMR and MD motional parameters in RNA
C. Musselman, Qi Zhang, H. Al-Hashimi, I. Andricioaei
2010Journal of Physical Chemistry B25 citations Open access
Semantic Scholar
Reaction Coordinate-Free Approach to Recovering Kinetics from Potential-Scaled Simulations: Application of Kramers' Rate Theory.
A. Frank, I. Andricioaei
2016Journal of Physical Chemistry B24 citations
Semantic Scholar
Constructing Atomic-Resolution RNA Structural Ensembles Using MD and Motionally Decoupled NMR RDCs
A. Stelzer, A. Frank, M. H. Bailor, I. Andricioaei +1 more
2009Methods22 citations Open access
Semantic Scholar
Free Energy Landscape and Conformational Kinetics of Hoogsteen Base-Pairing in DNA vs RNA
Dhiman Ray, I. Andricioaei
2020bioRxiv21 citations Open access
Semantic Scholar
Dendrimers in Nanoscale Confinement: The Interplay between Conformational Change and Nanopore Entrance.
Emel Ficici, I. Andricioaei, S. Howorka
2015Nano letters (Print)21 citations Open access
Semantic Scholar
Advances in milestoning. I. Enhanced sampling via wind-assisted reweighted milestoning (WARM).
Gianmarc Grazioli, I. Andricioaei
2018Journal of Chemical Physics20 citations Open access
Semantic Scholar
Microscopic basis for the mesoscopic extensibility of dendrimer-compacted DNA.
Maria Mills, Brad Orr, M. Banaszak Holl, I. Andricioaei
2010Biophysical Journal20 citations Open access
Semantic Scholar
Kinetics and free energy of ligand dissociation using weighted ensemble milestoning.
Dhiman Ray, T. Gokey, D. Mobley, I. Andricioaei
2020Journal of Chemical Physics17 citations Open access
Semantic Scholar
Interfacial Orientation and Secondary Structure Change in Tachyplesin I: Molecular Dynamics and Sum Frequency Generation Spectroscopy Studies
Andrew P. Boughton, K. Nguyen, I. Andricioaei, Zhan Chen
2011Langmuir16 citations Open access
Semantic Scholar
A First Model of the Dynamics of the Bacteriophage T4 Injection Machinery
A. Maghsoodi, Anupam Chatterjee, I. Andricioaei, N. Perkins
201614 citations
Semantic Scholar
Role of Microscopic Flexibility in Tightly Curved DNA
M. Taranova, A. Hirsh, N. Perkins, I. Andricioaei
2014Journal of Physical Chemistry B14 citations Open access
Semantic Scholar
Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition.
Jeff Wereszczynski, I. Andricioaei
2010Biophysical Journal14 citations Open access
Semantic Scholar
Dynamic Model Exposes the Energetics and Dynamics of the Injection Machinery for Bacteriophage T4.
A. Maghsoodi, Anupam Chatterjee, I. Andricioaei, N. Perkins
2017Biophysical Journal13 citations Open access
Semantic Scholar
Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity.
A. Hirsh, M. Taranova, Troy A. Lionberger, Todd D. Lillian +2 more
2013Biophysical Journal13 citations Open access
Semantic Scholar
Free-energy landscape and characteristic forces for the initiation of DNA unzipping.
A. Mentes, A. Florescu, Elizabeth Brunk, Jeff Wereszczynski +2 more
2015Biophysical Journal12 citations Open access
Semantic Scholar
A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]
Anthony T. Bogetti, Jeremy M. G. Leung, John D. Russo, She Zhang +18 more
2023Living journal of computational molecular science11 citations Open access
Semantic Scholar
Similarities between protein folding and granular jamming
P. Jose, I. Andricioaei
2012Nature Communications11 citations Open access
Semantic Scholar
Conformational and solvent entropy contributions to the thermal response of nucleic acid-based nanothermometers.
Jeff Wereszczynski, I. Andricioaei
2010Journal of Physical Chemistry B11 citations
Semantic Scholar
Entropy-energy decomposition from nonequilibrium work trajectories.
J. Nummela, Faten H. Yassin, I. Andricioaei
2008Journal of Chemical Physics11 citations
Semantic Scholar
Electric-Field-Induced Protein Translocation via a Conformational Transition in SecDF: An MD Study.
Emel Ficici, D. Jeong, I. Andricioaei
2017Biophysical Journal10 citations Open access
Semantic Scholar
Slowdown of Interhelical Motions Induces a Glass Transition in RNA.
A. Frank, Qi Zhang, H. Al-Hashimi, I. Andricioaei
2015Biophysical Journal10 citations Open access
Semantic Scholar
A Model for Highly Strained DNA Compressed Inside a Protein Cavity
A. Hirsh, Todd D. Lillian, Troy A. Lionberger, M. Taranova +2 more
201310 citations
Semantic Scholar
Energy landscape for DNA rotation and sliding through a phage portal.
J. Nummela, I. Andricioaei
2009Biophysical Journal10 citations Open access
Semantic Scholar
Considerable slowdown of short DNA fragment translocation across a protein nanopore using pH-induced generation of enthalpic traps inside the permeation pathway.
L. Mereuta, Alina Asandei, I. Andricioaei, Jonggwan Park +2 more
2023Nanoscale9 citations
Semantic Scholar
Predicting residue cooperativity during protein folding: A combined, molecular dynamics and unsupervised learning approach.
Praveen Ranganath Prabhakar, Dhiman Ray, I. Andricioaei
2023Journal of Chemical Physics9 citations Open access
Semantic Scholar
Force-Field-Dependent DNA Breathing Dynamics: A Case Study of Hoogsteen Base Pairing in A6-DNA
S. E. Stone, Dhiman Ray, I. Andricioaei
2022bioRxiv8 citations Open access
Semantic Scholar
Advances in milestoning. II. Calculating time-correlation functions from milestoning using stochastic path integrals.
Gianmarc Grazioli, I. Andricioaei
2018Journal of Chemical Physics8 citations Open access
Semantic Scholar
A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1]
Anthony T. Bogetti, Jeremy M. G. Leung, John D. Russo, She Zhang +11 more
2022bioRxiv7 citations Open access
Semantic Scholar
Rate turnover in mechano-catalytic coupling: A model and its microscopic origin.
Mahua Roy, Gianmarc Grazioli, I. Andricioaei
2015Journal of Chemical Physics7 citations
Semantic Scholar
Discriminant analysis optimizes progress coordinate in weighted ensemble simulations of rare event kinetics.
Praveen Ranganath Prabhakar, Dhiman Ray, I. Andricioaei
2025Journal of Chemical Physics6 citations Open access
Semantic Scholar
Automated placement of interfaces in conformational kinetics calculations using machine learning.
Gianmarc Grazioli, C. Butts, I. Andricioaei
2017Journal of Chemical Physics6 citations Open access
Semantic Scholar
On the Possibility of Facilitated Diffousion of Dendrimers Along DNA
Emel Ficici, I. Andricioaei
2015Journal of Physical Chemistry B6 citations Open access
Semantic Scholar
Reconstructing equilibrium entropy and enthalpy profiles from non-equilibrium pulling.
D. Jeong, I. Andricioaei
2012Journal of Chemical Physics6 citations Open access
Semantic Scholar
Point mutations in SARS-CoV-2 variants induce long-range dynamical perturbations in neutralizing antibodies
Dhiman Ray, Riley Quijano, I. Andricioaei
2022Chemical Science5 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

H. Al-Hashimi×11
Invite
H. Al-Hashimi — researcher profile on SciRah
Dhiman Ray×11
Invite
Dhiman Ray — researcher profile on SciRah
A. Frank×6
Invite
A. Frank — researcher profile on SciRah
Gianmarc Grazioli×5
Invite
Gianmarc Grazioli — researcher profile on SciRah

×5

Invite

N. Perkins — researcher profile on SciRah

Invite

M. Taranova — researcher profile on SciRah

Jeff Wereszczynski×4

Invite

Jeff Wereszczynski — researcher profile on SciRah

Invite

E. Nikolova — researcher profile on SciRah

Invite

A. Stelzer — researcher profile on SciRah

A. Maghsoodi×3

Invite

A. Maghsoodi — researcher profile on SciRah

Anupam Chatterjee×3

Invite

Anupam Chatterjee — researcher profile on SciRah

Todd D. Lillian×3

Invite

Todd D. Lillian — researcher profile on SciRah