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B. Eisenhaber · SciRah

Researcher profile · Semantic Scholar

B. Eisenhaber

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B. Eisenhaber — researcher profile on SciRah

h-index: 35
Works: 109
Citations: 5,043

Most-cited papers

A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe.
B. Eisenhaber, G. Schneider, Michael Wildpaner, F. Eisenhaber
2004Journal of Molecular Biology313 citations
Semantic Scholar
Glycosylphosphatidylinositol Lipid Anchoring of Plant Proteins. Sensitive Prediction from Sequence- and Genome-Wide Studies for Arabidopsis and Rice1
B. Eisenhaber, Michael Wildpaner, C. Schultz, Georg H. H. Borner +2 more
2003Plant Physiology215 citations Open access
Semantic Scholar
Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence.
Georg Neuberger, S. Maurer-Stroh, B. Eisenhaber, A. Hartig +1 more
2003Journal of Molecular Biology211 citations
Semantic Scholar
Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins.
B. Eisenhaber, S. Maurer-Stroh, M. Novatchkova, G. Schneider +1 more
2003Bioessays184 citations
Semantic Scholar
Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences.
Georg Neuberger, S. Maurer-Stroh, B. Eisenhaber, A. Hartig +1 more
2003Journal of Molecular Biology171 citations
Semantic Scholar
On filtering false positive transmembrane protein predictions.
M. Cserzö, F. Eisenhaber, B. Eisenhaber, I. Simon
2002Protein Engineering154 citations
Semantic Scholar
The ring between ring fingers (RBR) protein family
B. Eisenhaber, N. Chumak, F. Eisenhaber, M. Hauser
2007Genome Biology133 citations Open access
Semantic Scholar
TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter
M. Cserző, F. Eisenhaber, B. Eisenhaber, I. Simon
2004Bioinform.111 citations
Semantic Scholar
Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently “Orphan” Viral Proteins
Durga Kuchibhatla, Westley A. Sherman, B. Chung, S. Cook +3 more
2013Journal of Virology105 citations Open access
Semantic Scholar
Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1
F. Eisenhaber, B. Eisenhaber, Werner Kubina, S. Maurer-Stroh +3 more
2003Nucleic Acids Res.102 citations Open access
Semantic Scholar
SPACER: server for predicting allosteric communication and effects of regulation
A. Goncearenco, Simon Mitternacht, Taipang Yong, B. Eisenhaber +2 more
2013Nucleic Acids Res.96 citations Open access
Semantic Scholar
Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”
J. Baker, Wing-Cheong Wong, B. Eisenhaber, J. Warwicker +1 more
2017BMC Biology86 citations Open access
Semantic Scholar
Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development
W. K. Tse, B. Eisenhaber, S. H. Ho, Qimei Ng +2 more
2009BMC Genomics74 citations Open access
Semantic Scholar
Prediction of posttranslational modification of proteins from their amino acid sequence.
B. Eisenhaber, F. Eisenhaber
2010Methods in molecular biology66 citations
Semantic Scholar
Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family
M. Novatchkova, A. Bachmair, B. Eisenhaber, F. Eisenhaber
2005BMC Bioinformatics62 citations Open access
Semantic Scholar
Analysis of clinically relevant variants from ancestrally diverse Asian genomes
S. Chan, Yasmin Bylstra, Jing-Xian Teo, J. Kuan +82 more
2022Nature Communications60 citations Open access
Semantic Scholar
Posttranslational modifications and subcellular localization signals: indicators of sequence regions without inherent 3D structure?
B. Eisenhaber, F. Eisenhaber
2007Current protein and peptide science60 citations
Semantic Scholar
Protein function machinery: from basic structural units to modulation of activity.
I. Berezovsky, Enrico Guarnera, Zejun Zheng, B. Eisenhaber +1 more
2017Current Opinion in Structural Biology51 citations
Semantic Scholar
Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein’s omega-site and the GPI lipid anchor’s phosphoethanolamine
B. Eisenhaber, Stephan Eisenhaber, T. Y. Kwang, Gerhard Grüber +1 more
2014Cell Cycle51 citations Open access
Semantic Scholar
Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli.
P. Dip, N. Kamariah, Malathy Sony Subramanian Manimekalai, W. Nartey +4 more
2014Acta Crystallographica Section D: Biological Crystallography50 citations
Semantic Scholar
ANNIE: integrated de novo protein sequence annotation
H. Ooi, Chia Yee Kwo, Michael Wildpaner, Fernanda L. Sirota +6 more
2009Nucleic Acids Res.50 citations Open access
Semantic Scholar
To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131
E. Tantoso, B. Eisenhaber, Miles Kirsch, V. Shitov +2 more
2022BMC Biology49 citations Open access
Semantic Scholar
Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000
Swati Sinha, B. Eisenhaber, L. Jensen, Bharata Kalbuaji +1 more
2018Proteomics47 citations Open access
Semantic Scholar
Prediction of sequence signals for lipid post‐translational modifications: Insights from case studies
B. Eisenhaber, F. Eisenhaber, S. Maurer-Stroh, Georg Neuberger
2004Proteomics39 citations
Semantic Scholar
Discovery of a genetic module essential for assigning left–right asymmetry in humans and ancestral vertebrates
E. Szenker-Ravi, Tim Ott, Muznah Khatoo, A. M. de Bellaing +37 more
2021Nature Genetics36 citations Open access
Semantic Scholar
How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health
V. Kuznetsov, Hwee Kuan Lee, S. Maurer-Stroh, M. Molnár +3 more
2013Health Information Science and Systems36 citations Open access
Semantic Scholar
A Reversible Association between Smc Coiled Coils Is Regulated by Lysine Acetylation and Is Required for Cohesin Association with the DNA.
Irina Kulemzina, K. Ang, Xiaodan Zhao, Jun-Thing Teh +8 more
2016Molecules and Cells35 citations Open access
Semantic Scholar
Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD-PA1779-cobA operon.
Alessandra Romeo, E. Sonnleitner, Theresa Sorger-Domenigg, M. Nakano +2 more
2012Microbiology35 citations Open access
Semantic Scholar
Nuclear import of a lipid-modified transcription factor
B. Eisenhaber, Michaela Sammer, Heng-Lua Wai, Wolfgang Benetka +6 more
2011Cell Cycle35 citations Open access
Semantic Scholar
Species specific membrane anchoring of nyctalopin, a small leucine-rich repeat protein.
E. O'Connor, B. Eisenhaber, J. Dalley, Tao Wang +4 more
2005Human Molecular Genetics35 citations
Semantic Scholar
The 160K Natural Organism Library, a unique resource for natural products research
Siewbee Ng, Yoganathan Kanagasundaram, Hao Fan, Prakash Arumugam +2 more
2018Nature Biotechnology31 citations
Semantic Scholar
Key roles of the Escherichia coli AhpC C-terminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress.
P. Dip, N. Kamariah, W. Nartey, Claudia Beushausen +7 more
2014Biochimica et Biophysica Acta29 citations Open access
Semantic Scholar
Post-translational Regulation of Radioactive Iodine Therapy Response in Papillary Thyroid Carcinoma
M. Amit, S. Na'ara, D. Francis, Wisam Matanis +8 more
2017Journal of the National Cancer Institute28 citations Open access
Semantic Scholar
Biomolecular pathway databases.
H. Ooi, G. Schneider, Teng-Ting Lim, Y. Chan +2 more
2010Methods in molecular biology27 citations
Semantic Scholar
Transition steps in peroxide reduction and a molecular switch for peroxide robustness of prokaryotic peroxiredoxins
N. Kamariah, M. F. Sek, B. Eisenhaber, F. Eisenhaber +1 more
2016Scientific Reports24 citations Open access
Semantic Scholar
Databases of protein-protein interactions and complexes.
H. Ooi, G. Schneider, Y. Chan, Teng-Ting Lim +2 more
2010Methods in molecular biology24 citations
Semantic Scholar
Prenylation of viral proteins by enzymes of the host: Virus‐driven rationale for therapy with statins and FT/GGT1 inhibitors
E. Marakasova, B. Eisenhaber, S. Maurer-Stroh, F. Eisenhaber +1 more
2017Bioessays23 citations Open access
Semantic Scholar
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites
B. Eisenhaber, Swati Sinha, Chaitanya K. Jadalanki, V. Shitov +3 more
2021Biology Direct22 citations Open access
Semantic Scholar
Single‐residue posttranslational modification sites at the N‐terminus, C‐terminus or in‐between: To be or not to be exposed for enzyme access
Fernanda L. Sirota, S. Maurer-Stroh, B. Eisenhaber, F. Eisenhaber
2015Proteomics22 citations Open access
Semantic Scholar
Targeting the GPI transamidase subunit GPAA1 abrogates the CD24 immune checkpoint in ovarian cancer.
Alok K. Mishra, Tianyi Ye, Shahid Banday, R. Thakare +16 more
2024Cell Reports21 citations Open access
Semantic Scholar
Crystallographic and solution studies of NAD(+)- and NADH-bound alkylhydroperoxide reductase subunit F (AhpF) from Escherichia coli provide insight into sequential enzymatic steps.
N. Kamariah, M. Manimekalai, W. Nartey, F. Eisenhaber +2 more
2015Biochimica et Biophysica Acta19 citations Open access
Semantic Scholar
Function of a membrane-embedded domain evolutionarily multiplied in the GPI lipid anchor pathway proteins PIG-B, PIG-M, PIG-U, PIG-W, PIG-V, and PIG-Z
B. Eisenhaber, Swati Sinha, Wing-Cheong Wong, F. Eisenhaber
2018Cell Cycle17 citations Open access
Semantic Scholar
Prenylation: From bacteria to eukaryotes
E. Marakasova, N. Akhmatova, M. Amaya, B. Eisenhaber +3 more
2013Molecular Biology17 citations
Semantic Scholar
The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.
B. Eisenhaber, Durga Kuchibhatla, Westley A. Sherman, Fernanda L. Sirota +3 more
2016Methods in molecular biology16 citations
Semantic Scholar
Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment.
G. Schneider, Michael Wildpaner, Fernanda L. Sirota, S. Maurer-Stroh +2 more
2010Methods in molecular biology16 citations
Semantic Scholar
Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723
Swati Sinha, Choy-Eng Nge, C. Leong, V. Ng +12 more
2019BMC Genomics15 citations Open access
Semantic Scholar
Molecular mechanism of the Escherichia coli AhpC in the function of a chaperone under heat-shock conditions
N. Kamariah, B. Eisenhaber, F. Eisenhaber, Gerhard Grüber
2018Scientific Reports15 citations Open access
Semantic Scholar
Erratum to: Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”
J. Baker, Wing-Cheong Wong, B. Eisenhaber, J. Warwicker +1 more
2017BMC Biology15 citations Open access
Semantic Scholar
Structural insight into the glycosylphosphatidylinositol transamidase subunits PIG-K and PIG-S from yeast.
Y. K. Toh, N. Kamariah, S. Maurer-Stroh, M. Roessle +4 more
2011Journal of Structural Biology15 citations
Semantic Scholar
dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity
Wing-Cheong Wong, Choon-Kong Yap, B. Eisenhaber, F. Eisenhaber
2015Biology Direct14 citations Open access
Semantic Scholar

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