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O. Harismendy · SciRah

Researcher profile · Semantic Scholar

O. Harismendy

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O. Harismendy — researcher profile on SciRah

h-index: 40
Works: 164
Citations: 7,867

Most-cited papers

Deciphering cell–cell interactions and communication from gene expression
Erick Armingol, Adam Officer, O. Harismendy, Nathan E. Lewis
2020Nature reviews genetics1,144 citations Open access
Semantic Scholar
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
O. Rozenblatt-Rosen, A. Regev, Philipp Oberdoerffer, T. Nawy +362 more
2020Cell514 citations Open access
Semantic Scholar
Deep mining heterogeneous networks of biomedical linked data to predict novel drug‐target associations
N. Zong, Hyeon-Eui Kim, V. Ngo, O. Harismendy
2017Bioinform.167 citations Open access
Semantic Scholar
Illuminating the Onco-GPCRome: Novel G protein–coupled receptor-driven oncocrine networks and targets for cancer immunotherapy
Victoria H. Wu, Huwate Yeerna, N. Nohata, Joshua Chiou +6 more
2019Journal of Biological Chemistry159 citations Open access
Semantic Scholar
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
Athanasia D. Panopoulos, Matteo D'Antonio, P. Benaglio, Roy M. Williams +44 more
2017Stem Cell Reports139 citations Open access
Semantic Scholar
Genomic Landscape of Appendiceal Neoplasms.
C. Ang, J. Shen, Camille Hardy-Abeloos, Justin K. Huang +12 more
2018JCO Precision Oncology100 citations Open access
Semantic Scholar
PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens
Philipp Spahn, Tyler Bath, Ryan J. Weiss, Jihoon Kim +3 more
2017Scientific Reports90 citations Open access
Semantic Scholar
Integrative genomic analysis of mouse and human hepatocellular carcinoma
Michelle Dow, R. Pyke, B. Tsui, L. Alexandrov +8 more
2018Proceedings of the National Academy of Sciences of the United States of America81 citations Open access
Semantic Scholar
Inhibition of mTOR Signaling and Clinical Activity of Rapamycin in Head and Neck Cancer in a Window of Opportunity Trial
T. Day, K. Shirai, Paul H. O'Brien, Maria Giselle Matheus +15 more
2018Clinical Cancer Research78 citations Open access
Semantic Scholar
Inhibition of mTOR signaling and clinical activity of metformin in oral premalignant lesions
J. Gutkind, Alfredo A. Molinolo, Xingyu Wu, Zhi-Yong Wang +18 more
2021JCI Insight65 citations Open access
Semantic Scholar
Whole genome sequencing of an African American family highlights toll like receptor 6 variants in Kawasaki disease susceptibility
Jihoon Kim, C. Shimizu, S. Kingsmore, N. Veeraraghavan +10 more
2017PLoS ONE61 citations Open access
Semantic Scholar
ADAR1-mediated RNA-editing of 3′UTRs in breast cancer
Eduardo A. Sagredo, A. Blanco, Alfredo I. Sagredo, Paola Pérez +7 more
2018Biological Research56 citations Open access
Semantic Scholar
Autophagy gene haploinsufficiency drives chromosome instability, increases migration, and promotes early ovarian tumors
J. Delaney, Chandni B. Patel, Jaidev Bapat, Christian M Jones +11 more
2020PLoS Genetics55 citations Open access
Semantic Scholar
Cancer-associated fibroblast secretion of PDGFC promotes gastrointestinal stromal tumor growth and metastasis
Hyunho Yoon, Chih-Min Tang, S. Banerjee, M. Yebra +18 more
2021Oncogene51 citations Open access
Semantic Scholar
HNRNPK maintains epidermal progenitor function through transcription of proliferation genes and degrading differentiation promoting mRNAs
Jing-Ting Li, Yi-Fang Chen, Xiao-Jun Xu, Jackson Jones +5 more
2019Nature Communications50 citations Open access
Semantic Scholar
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.
Athanasia D. Panopoulos, Matteo D'Antonio, P. Benaglio, Roy M. Williams +44 more
2017Stem Cell Reports44 citations Open access
Semantic Scholar
Immune-related IncRNA LINC00944 responds to variations in ADAR1 levels and it is associated with breast cancer prognosis.
Pamela R. de Santiago, A. Blanco, Fernanda Morales, K. Marcelain +3 more
2020Life Science40 citations
Semantic Scholar
Haploinsufficiency networks identify targetable patterns of allelic deficiency in low mutation ovarian cancer
J. Delaney, Chandni B. Patel, K. Willis, Mina Haghighiabyaneh +14 more
2017Nature Communications37 citations Open access
Semantic Scholar
Multiomic QTL mapping reveals phenotypic complexity of GWAS loci and prioritizes putative causal variants
Timothy D. Arthur, Jennifer P. Nguyen, Benjamin A. Henson, Agnieszka D'Antonio-Chronowska +36 more
2025Cell Genomics35 citations Open access
Semantic Scholar
Immune DNA signature of T-cell infiltration in breast tumor exomes
E. Lévy, Rachel Marty, Valentina Gárate Calderón, Brian J Woo +4 more
2016Scientific Reports35 citations Open access
Semantic Scholar
Establishment of Patient-derived Succinate Dehydrogenase-deficient Gastrointestinal Stromal Tumor Models for Predicting Therapeutic Response
M. Yebra, S. Bhargava, Avi Kumar, Adam M. Burgoyne +18 more
2021Clinical Cancer Research34 citations Open access
Semantic Scholar
Germline determinants of the somatic mutation landscape in 2,642 cancer genomes
Sebastian M. Waszak, Grace Tiao, Bin Zhu, T. Rausch +87 more
2017bioRxiv34 citations Open access
Semantic Scholar
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
M. Pagadala, T. Sears, Victoria H. Wu, Eva Pérez-Guijarro +25 more
2023Nature Communications31 citations Open access
Semantic Scholar
Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Chih-Min Tang, T. E. Lee, Sabriya A. Syed, Adam M. Burgoyne +15 more
2016OncoTarget31 citations Open access
Semantic Scholar
Stromal remodeling regulates dendritic cell abundance and activity in the tumor microenvironment
A. Papadas, Gauri Deb, Alexander Cicala, Adam Officer +16 more
2021bioRxiv29 citations Open access
Semantic Scholar
Complex regulatory networks influence pluripotent cell state transitions in human iPSCs
Timothy D. Arthur, J. Nguyen, Agnieszka D'Antonio-Chronowska, H. Matsui +35 more
2024Nature Communications27 citations Open access
Semantic Scholar
Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments
Christina K. Yung, Brian O’Connor, Sergei Yakneen, Junjun Zhang +109 more
2017bioRxiv25 citations Open access
Semantic Scholar
Nuclear respiratory factor 1 promotes spheroid survival and mesenchymal transition in mammary epithelial cells
Yuanshuai Zhou, Zhong-Juan Xu, Daniel Quan, Fan Zhang +7 more
2018Oncogene22 citations Open access
Semantic Scholar
Duodenal-Jejunal Flexure GI Stromal Tumor Frequently Heralds Somatic NF1 and Notch Pathway Mutations
Adam M. Burgoyne, M. De Siena, Maha Alkhuziem, Chih-Min Tang +12 more
2017JCO Precision Oncology22 citations Open access
Semantic Scholar
Stem-like breast cancer cells in the activated state resist genetic stress via TGFBI-ZEB1
Qi Sun, Yu-Fan Wang, Adam Officer, Brianna Pecknold +3 more
202220 citations Open access
Semantic Scholar
Whole-genome CRISPR screening identifies PI3K/AKT as a downstream component of the oncogenic GNAQ–focal adhesion kinase signaling circuitry
Nadia Arang, Simone Lubrano, D. Rigiracciolo, D. Nachmanson +4 more
2022Journal of Biological Chemistry16 citations Open access
Semantic Scholar
The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ
D. Nachmanson, Adam Officer, H. Mori, J. Gordon +14 more
2021npj Breast Cancer16 citations Open access
Semantic Scholar
HER2-Overexpressing Ductal Carcinoma In Situ Associated with Increased Risk of Ipsilateral Invasive Recurrence and Receptor Discordance with Subsequent Lesion
T. O'Keefe, S. Blair, A. Hosseini, O. Harismendy +1 more
2020Cancer Prevention Research16 citations Open access
Semantic Scholar
Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia.
E. Ghia, L. Rassenti, D. Neuberg, A. Blanco +7 more
2019Blood16 citations Open access
Semantic Scholar
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
M. Pagadala, Victoria H. Wu, Eva Pérez-Guijarro, H. Kim +21 more
2021bioRxiv15 citations Open access
Semantic Scholar
Interaction Between the Contributions of Tumor Location, Tumor Grade, and Patient Age to the Survival Benefit Associated with Gross Total Resection.
Kate T. Carroll, A. Bryant, B. Hirshman, Ali Alattar +6 more
2018World Neurosurgery15 citations
Semantic Scholar
A Randomized Multi-Institutional Phase II Trial of Everolimus as Adjuvant Therapy in Patients with Locally Advanced Squamous Cell Cancer of the Head and Neck
C. Nathan, D. Hayes, T. Karrison, O. Harismendy +18 more
2022Clinical Cancer Research14 citations Open access
Semantic Scholar
Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project
Alexander Semaan, V. Bernard, Justin W. Wong, M. Yuki +17 more
2022bioRxiv13 citations Open access
Semantic Scholar
Prognostic Importance of Age, Tumor Location, and Tumor Grade in Grade II Astrocytomas: An Integrated Analysis of the Cancer Genome Atlas and the Surveillance, Epidemiology, and End Results Database.
Ali Alattar, Kate T. Carroll, A. Bryant, B. Hirshman +4 more
2019World Neurosurgery12 citations
Semantic Scholar
Title Whole genome sequencing of an African American family highlights toll like receptor 6 variants in Kawasaki disease susceptibility
Jihoon Kim, C. Shimizu, S. Kingsmore, N. Veeraraghavan +11 more
201711 citations
Semantic Scholar
Prevalence of cancer susceptibility variants in patients with multiple Lynch syndrome related cancers
Yoon Young Choi, Su-Jin Shin, Jae Eun Lee, L. Madlensky +9 more
2021Scientific Reports10 citations Open access
Semantic Scholar
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer
Alexander T. Wenzel, Devora Champa, H. Venkatesh, Si Sun +5 more
2022npj Systems Biology and Applications8 citations Open access
Semantic Scholar
Mutational profiling of micro-dissected pre-malignant lesions from archived specimens
D. Nachmanson, J. Steward, Huazhen Yao, Adam Officer +8 more
2020bioRxiv8 citations Open access
Semantic Scholar
Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1.
Pratima Rawat, S. Brummel, K. Singh, Jihoon Kim +8 more
2020Journal of Infectious Diseases7 citations Open access
Semantic Scholar
Evaluating and sharing global genetic ancestry in biomedical datasets
O. Harismendy, Jihoon Kim, Xiao-Jun Xu, L. Ohno-Machado
2019J. Am. Medical Informatics Assoc.7 citations Open access
Semantic Scholar
Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas
Alexandra R. Buckley, T. Ideker, H. Carter, O. Harismendy +1 more
2018Genome Medicine7 citations Open access
Semantic Scholar
Abstract 2153: Cyclin E1 protein overexpression sensitizes ovarian cancer cells to ZN-c3, a novel, selective and oral bioavailable inhibitor of Wee1
Jian-Hui Ma, Wen Liu, Heekyung Chung, Hooman Izadi +15 more
2023Cancer Research5 citations
Semantic Scholar
eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk
J. Nguyen, Timothy D. Arthur, Kyohei Fujita, Bianca M. Salgado +33 more
2023Nature Communications5 citations Open access
Semantic Scholar
Risk factors for breast cancer mortality after ductal carcinoma in situ diagnosis differ from those for invasive recurrence.
T. O'Keefe, Harrison Chau, O. Harismendy, A. Wallace
2022Surgery5 citations Open access
Semantic Scholar
Large and diffuse ductal carcinoma in situ: potentially lethal subtypes of “preinvasive” disease
T. O'Keefe, O. Harismendy, A. Wallace
2021International Journal of Clinical Oncology5 citations Open access
Semantic Scholar

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