Alex Bishara

Most-cited papers

1. Human-specific NOTCH2NL genes affect Notch signaling and cortical neurogenesis

   Ian T. Fiddes, G. A. Lodewijk, M. Mooring, Colleen M. Bosworth +23 more

   2018Cell513 citations Open access

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2. Exploring the tradeoffs between programmability and efficiency in data-parallel accelerators

   Yunsup Lee, Rimas Avizienis, Alex Bishara, R. Xia +3 more

   2011International Symposium on Computer Architecture120 citations Open access

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3. Genome-wide reconstruction of complex structural variants using read clouds

   N. Spies, Z. Weng, Alex Bishara, Jennifer McDaniel +6 more

   2016Nature Methods109 citations Open access

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4. High-quality genome sequences of uncultured microbes by assembly of read clouds

   Alex Bishara, Eli L. Moss, M. Kolmogorov, A. Parada +5 more

   2018Nature Biotechnology100 citations Open access

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5. Exploring the Tradeoffs between Programmability and Efficiency in Data-Parallel Accelerators

   Yunsup Lee, Rimas Avizienis, Alex Bishara, R. Xia +3 more

   2013ACM Transactions on Computer Systems83 citations Open access

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6. Read clouds uncover variation in complex regions of the human genome

   Alex Bishara, Yuling Liu, Z. Weng, Dorna Kashef-Haghighi +4 more

   2015Annual International Conference on Research in Computational Molecular Biology66 citations Open access

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7. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

   S. Zlitni, Alex Bishara, Eli L. Moss, E. Tkachenko +9 more

   2018Genome Medicine48 citations Open access

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8. Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

   Ian T. Fiddes, G. A. Lodewijk, M. Mooring, Colleen M. Bosworth +23 more

   2017bioRxiv26 citations Open access

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9. De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences

   Eli L. Moss, Alex Bishara, E. Tkachenko, Joyce B. Kang +6 more

   2017bioRxiv13 citations Open access

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10. Culture-free generation of microbial genomes from human and marine microbiomes

    Alex Bishara, Eli L. Moss, M. Kolmogorov, A. Parada +5 more

    2018bioRxiv7 citations Open access

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11. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

    S. Zlitni, Alex Bishara, Eli L. Moss, E. Tkachenko +9 more

    2020Genome Medicine1 citations Open access

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12. UvA-DARE (Digital Academic Repository) Segmental duplications as a source of innovation in brain development

    Ian T. Fiddes, M. Mooring, M. Colleen, Bosworth +27 more

    20210 citations

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13. Genome assembly methods using read clouds

    Alex Bishara

    20170 citations

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14. Visualizing Human Concept Linking Through Wikipedia

    Alex Bishara

    20120 citations

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15. The Maven vector-thread architecture

    Yunsup Lee, Rimas Avizienis, Alex Bishara, R. Xia +3 more

    2011IEEE Hot Chips Symposium0 citations

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