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Yilin Meng · SciRah

Researcher profile · Semantic Scholar

Yilin Meng

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Yilin Meng — researcher profile on SciRah

h-index: 21
Works: 37
Citations: 1,849

Most-cited papers

Activation pathway of Src kinase reveals intermediate states as novel targets for drug design
D. Shukla, Yilin Meng, B. Roux, V. Pande
2014Nature Communications228 citations Open access
Semantic Scholar
Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
Yen-Lin Lin, Yilin Meng, Wei Jiang, B. Roux
2013Proceedings of the National Academy of Sciences of the United States of America151 citations Open access
Semantic Scholar
Activation pathway of Src kinase reveals intermediate states as targets for drug design
D. Shukla, Yilin Meng, B. Roux, V. Pande
2014146 citations
Semantic Scholar
Exchange frequency in replica exchange molecular dynamics.
Daniel J. Sindhikara, Yilin Meng, A. Roitberg
2008Journal of Chemical Physics144 citations
Semantic Scholar
Generalized Scalable Multiple Copy Algorithms for Molecular Dynamics Simulations in NAMD
Wei Jiang, James C. Phillips, Lei Huang, M. Fajer +5 more
2014Computer Physics Communications128 citations Open access
Semantic Scholar
Constant pH replica exchange molecular dynamics in biomolecules using a discrete protonation model
Yilin Meng, A. Roitberg
2010Journal of Chemical Theory and Computation105 citations Open access
Semantic Scholar
Snapshots and ensembles of BTK and cIAP1 protein degrader ternary complexes
J. Schiemer, R. Horst, Yilin Meng, J. Montgomery +12 more
2020Nature Chemical Biology98 citations
Semantic Scholar
Computing Alchemical Free Energy Differences with Hamiltonian Replica Exchange Molecular Dynamics (H-REMD) Simulations
Yilin Meng, Danial S. Dashti, A. Roitberg
2011Journal of Chemical Theory and Computation94 citations Open access
Semantic Scholar
Locking the Active Conformation of c-Src Kinase through the Phosphorylation of the Activation Loop
Yilin Meng, B. Roux
2013Journal of Molecular Biology88 citations Open access
Semantic Scholar
Self-Learning Adaptive Umbrella Sampling Method for the Determination of Free Energy Landscapes in Multiple Dimensions
Wojciech Wojtas-Niziurski, Yilin Meng, B. Roux, S. Bernèche
2013Journal of Chemical Theory and Computation83 citations Open access
Semantic Scholar
Transition path theory analysis of c-Src kinase activation
Yilin Meng, D. Shukla, V. Pande, B. Roux
2016Proceedings of the National Academy of Sciences of the United States of America77 citations Open access
Semantic Scholar
Computational Study of the “DFG-Flip” Conformational Transition in c-Abl and c-Src Tyrosine Kinases
Yilin Meng, Yen-Lin Lin, B. Roux
2014Journal of Physical Chemistry B71 citations Open access
Semantic Scholar
Tyrosine kinase activation and conformational flexibility: Lessons from Src-family tyrosine kinases
Yilin Meng, Matthew P. Pond, B. Roux
2017Accounts of Chemical Research63 citations Open access
Semantic Scholar
pH-Replica Exchange Molecular Dynamics In Proteins Using A Discrete Protonation Method
Danial S. Dashti, Yilin Meng, A. Roitberg
2012Journal of Physical Chemistry B53 citations Open access
Semantic Scholar
Computational Study of Gleevec and G6G Reveals Molecular Determinants of Kinase Inhibitor Selectivity
Yen-Lin Lin, Yilin Meng, Lei Huang, B. Roux
2014Journal of the American Chemical Society52 citations Open access
Semantic Scholar
Predicting the Conformational Variability of Abl Tyrosine Kinase using Molecular Dynamics Simulations and Markov State Models
Yilin Meng, Cen Gao, D. Clawson, S. Atwell +3 more
2018Journal of Chemical Theory and Computation49 citations Open access
Semantic Scholar
The Activation of c-Src Tyrosine Kinase: Conformational Transition Pathway and Free Energy Landscape
M. Fajer, Yilin Meng, B. Roux
2016Journal of Physical Chemistry B41 citations Open access
Semantic Scholar
pH Dependent Mechanism of Nitric Oxide Release in Nitrophorins 2 and 4
Jason M. Swails, Yilin Meng, F. Walker, M. Marti +2 more
2009Journal of Physical Chemistry B37 citations Open access
Semantic Scholar
Pathological mechanism of joint destruction in haemophilic arthropathy
Haijia Zhu, Yilin Meng, P. Tong, Shan-Xing Zhang
2020Molecular Biology Reports36 citations
Semantic Scholar
Efficient Determination of Free Energy Landscapes in Multiple Dimensions from Biased Umbrella Sampling Simulations Using Linear Regression
Yilin Meng, B. Roux
2015Journal of Chemical Theory and Computation23 citations Open access
Semantic Scholar
Mechanism of voltage gating in the voltage-sensing phosphatase Ci-VSP
R. Shen, Yilin Meng, B. Roux, E. Perozo
2022bioRxiv22 citations Open access
Semantic Scholar
Identification of druggable kinase target conformations using Markov model metastable states analysis of apo-Abl
Fabian Paul, Yilin Meng, B. Roux
2020Journal of Chemical Theory and Computation21 citations Open access
Semantic Scholar
A Catalytically Disabled Double Mutant of Src Tyrosine Kinase Can Be Stabilized into an Active-Like Conformation
Yilin Meng, Lalima G. Ahuja, A. Kornev, Susan S. Taylor +1 more
2018Journal of Molecular Biology14 citations Open access
Semantic Scholar
Computational study of the W260A activating mutant of Src tyrosine kinase
Yilin Meng, B. Roux
2016Protein Science13 citations Open access
Semantic Scholar
The rise of targeting chimeras (TACs): next-generation medicines that preempt cellular events
S. Hollingsworth, Scott E. Johnson, Pouyan Khakbaz, Yilin Meng +6 more
2023Medicinal Chemistry Research8 citations
Semantic Scholar
Diaquabis(1-naphthaleneacetato-κ O )bis(1,10-phenanthroline-κ 2 N , N ′)erbium(III) 1-naphthaleneacetate monohydrate
Yuan-Fa Liu, Hai-Ting Xia, David H. Wang, Sai-Ming Yang +1 more
20075 citations
Semantic Scholar
Mezigdomide overcomes CRBN mutations emerging post IMiD therapy
Edmond R Watson, Chad C. Bjorklund, Nicholas Stong, Scott Hollingsworth +9 more
2025Blood1 citations
Semantic Scholar
Corrigendum to “A Catalytically-Disabled Double Mutant of Src Tyrosine Kinase Can Be Stabilized into an Active-Like Conformation.” J. Mol. Biol. 430(6) (Mar 16 2018), 881–889
Yilin Meng, Lalima G. Ahuja, A. Kornev, Susan S. Taylor +1 more
2018Journal of Molecular Biology1 citations
Semantic Scholar
Simulation of the Conformational Transition Pathway for the Activation of Full-Length C-Src Kinase using the String Method
M. Fajer, Yilin Meng, B. Roux
20141 citations Open access
Semantic Scholar
Generalized Scalable Multiple Copy Algorithms for Biological Molecular Dynamics Simulations in NAMD
Wei Jiang, James C. Phillips, Lei Huang, M. Fajer +5 more
20141 citations Open access
Semantic Scholar
Study on structural-functional optimization of carbon fiber skeleton material and mechanism of integrated reinforced nylon composites
Yilin Meng, Hongbin Li, Zhihua Li, Shaokang Zhang +2 more
2026Composite structures0 citations
Semantic Scholar
Design and optimization of surrogate models for NPR structures under heat-treatment–driven property evolution
Yubao Peng, Yilin Meng, Shaokang Zhang, Hongbin Li +1 more
2026Journal of Physics, Conference Series0 citations Open access
Semantic Scholar
Self-determined or Non-self-determined? Research on the Influence of Internal and External Motivations on Fund Investment Decisions
Junwen Mo, Yu-Fei Chang, Chen-Xi Li, Meichen Wang +2 more
2024BI0 citations
Semantic Scholar
An Allosteric Region of Src Tyrosine Kinase Allows for Stabilization of Its Active-Like Conformation
Lalima G. Ahuja, Yilin Meng, A. Kornev, B. Roux +1 more
20180 citations Open access
Semantic Scholar
An active‐like Src conformation explains its dynamic regulation
Lalima G. Ahuja, Yilin Meng, A. Kornev, B. Roux +1 more
20180 citations
Semantic Scholar
Computational Characterization of Conformational Transitions in the Voltage-Sensing Domain of Ci-VSP
R. Shen, Qufei Li, David Medovoy, Yilin Meng +2 more
20160 citations Open access
Semantic Scholar
The Structural Plasticity Of Lung Surfactant Peptide KL4 In Lipid Membranes
Joanna R. Long, A. Mehta, Yilin Meng, A. Roitberg +3 more
20090 citations Open access
Semantic Scholar

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