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S. Auburn · SciRah

Researcher profile · Semantic Scholar

S. Auburn

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S. Auburn — researcher profile on SciRah

h-index: 41
Works: 127
Citations: 6,355

Most-cited papers

Genomic epidemiology of artemisinin resistant malaria.
A. Amato, O. Miotto, C. Woodrow, J. Almagro-Garcia +30 more
2016eLife269 citations Open access
Semantic Scholar
A prospective comparative study of knowlesi, falciparum, and vivax malaria in Sabah, Malaysia: high proportion with severe disease from Plasmodium knowlesi and Plasmodium vivax but no mortality with early referral and artesunate therapy.
B. Barber, T. William, M. Grigg, J. Menon +4 more
2013Clinical Infectious Diseases258 citations Open access
Semantic Scholar
Genomic analysis of local variation and recent evolution in Plasmodium vivax
R. Pearson, R. Amato, S. Auburn, O. Miotto +40 more
2016Nature Genetics193 citations Open access
Semantic Scholar
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
Ambroise D. Ahouidi, Mozam Ali, J. Almagro-Garcia, Alfred Amambua-Ngwa +133 more
2019bioRxiv187 citations Open access
Semantic Scholar
Targeting vivax malaria in the Asia Pacific: The Asia Pacific Malaria Elimination Network Vivax Working Group
N. Anstey, S. Auburn, J. Baird, K. Battle +43 more
2015Malaria Journal179 citations Open access
Semantic Scholar
Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution
G. G. Rutledge, Ulrike Böhme, M. Sanders, A. Reid +18 more
2017Nature177 citations Open access
Semantic Scholar
Short-course primaquine for the radical cure of Plasmodium vivax malaria: a multicentre, randomised, placebo-controlled non-inferiority trial
W. Taylor, K. Thriemer, L. von Seidlein, P. Yuentrakul +41 more
2019The Lancet149 citations Open access
Semantic Scholar
Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples
M. A. Abdel Hamid, M. H. Abdelraheem, D. O. Acheampong, Ambroise D. Ahouidi +168 more
2023Wellcome Open Research138 citations Open access
Semantic Scholar
A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes
S. Auburn, Ulrike Böhme, Sascha Steinbiss, Hidayat Trimarsanto +8 more
2016Wellcome Open Research138 citations Open access
Semantic Scholar
Review of key knowledge gaps in glucose-6-phosphate dehydrogenase deficiency detection with regard to the safe clinical deployment of 8-aminoquinoline treatment regimens: a workshop report
L. von Seidlein, S. Auburn, F. Espino, D. Shanks +13 more
2013Malaria Journal132 citations Open access
Semantic Scholar
Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea
O. Miotto, Makoto Sekihara, S. Tachibana, M. Yamauchi +21 more
2019bioRxiv111 citations Open access
Semantic Scholar
Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination
Rintis Noviyanti, F. Coutrier, Retno A. S. Utami, Hidayat Trimarsanto +13 more
2015PLoS Neglected Tropical Diseases92 citations Open access
Semantic Scholar
Comparison of artemether-lumefantrine and chloroquine with and without primaquine for the treatment of Plasmodium vivax infection in Ethiopia: A randomized controlled trial
T. Abreha, Jimee Hwang, K. Thriemer, Yehualashet Tadesse +23 more
2017PLoS Medicine87 citations Open access
Semantic Scholar
Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya
S. Borrmann, J. Straimer, L. Mwai, A. Abdi +16 more
2013Scientific Reports76 citations Open access
Semantic Scholar
Dissecting malaria biology and epidemiology using population genetics and genomics.
S. Auburn, Alyssa E. Barry
2017International Journal of Parasitology74 citations Open access
Semantic Scholar
Submicroscopic and Asymptomatic Plasmodium Parasitaemia Associated with Significant Risk of Anaemia in Papua, Indonesia
Z. Pava, F. Burdam, Irene Handayuni, L. Trianty +15 more
2016PLoS ONE74 citations Open access
Semantic Scholar
Challenges for achieving safe and effective radical cure of Plasmodium vivax: a round table discussion of the APMEN Vivax Working Group
K. Thriemer, Benedikt Ley, A. Bobogare, L. Dysoley +63 more
2017Malaria Journal72 citations Open access
Semantic Scholar
Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics
S. Auburn, E. D. Benavente, O. Miotto, R. Pearson +15 more
2018Nature Communications66 citations Open access
Semantic Scholar
Plasmodium vivax Population Structure and Transmission Dynamics in Sabah Malaysia
N. Abdullah, B. Barber, T. William, Nor Azrina Norahmad +11 more
2013PLoS ONE64 citations Open access
Semantic Scholar
Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms
S. Auburn, Sisay Getachew, R. Pearson, R. Amato +19 more
2019Journal of Infectious Diseases58 citations Open access
Semantic Scholar
Efficacy of Artesunate-mefloquine for Chloroquine-resistant Plasmodium vivax Malaria in Malaysia: An Open-label, Randomized, Controlled Trial
M. Grigg, T. William, J. Menon, B. Barber +7 more
2016Clinical Infectious Diseases49 citations Open access
Semantic Scholar
Implementing parasite genotyping into national surveillance frameworks: feedback from control programmes and researchers in the Asia–Pacific region
Rintis Noviyanti, O. Miotto, Alyssa E. Barry, J. Marfurt +20 more
2020Malaria Journal47 citations Open access
Semantic Scholar
An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples
I. Adam, M. Alam, S. Alemu, Chanaki Amaratunga +74 more
2022Wellcome Open Research46 citations Open access
Semantic Scholar
Genomic Characterization of Recrudescent Plasmodium malariae after Treatment with Artemether/Lumefantrine
G. G. Rutledge, I. Marr, G. K. L. Huang, S. Auburn +8 more
2017Emerging Infectious Diseases43 citations Open access
Semantic Scholar
G6PD Deficiency and Antimalarial Efficacy for Uncomplicated Malaria in Bangladesh: A Prospective Observational Study
Benedikt Ley, M. Alam, K. Thriemer, M. S. Hossain +5 more
2016PLoS ONE41 citations Open access
Semantic Scholar
The changing epidemiology of Plasmodium vivax: Insights from conventional and novel surveillance tools
S. Auburn, Q. Cheng, J. Marfurt, R. Price
2021PLoS Medicine40 citations Open access
Semantic Scholar
Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia
Sisay Getachew, Sheren To, Hidayat Trimarsanto, K. Thriemer +5 more
2015PLoS ONE40 citations Open access
Semantic Scholar
Transfusion-transmitted severe Plasmodium knowlesi malaria in a splenectomized patient with beta-thalassaemia major in Sabah, Malaysia: a case report
Elspeth Bird, U. Parameswaran, T. William, Tien-Meng Khoo +7 more
2016Malaria Journal37 citations Open access
Semantic Scholar
Chloroquine efficacy for Plasmodium vivax malaria treatment in southern Ethiopia
Sisay Getachew, K. Thriemer, S. Auburn, A. Abera +4 more
2015Malaria Journal34 citations Open access
Semantic Scholar
Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations
E. D. Benavente, Ana Rita Gomes, J. R. de Silva, M. Grigg +16 more
2019Scientific Reports31 citations Open access
Semantic Scholar
Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand
S. Auburn, David Serre, R. Pearson, R. Amato +11 more
2016Journal of Infectious Diseases30 citations Open access
Semantic Scholar
Genetic diversity and population structure of Plasmodium vivax in Central China
Yao-Bao Liu, S. Auburn, Jun Cao, Hidayat Trimarsanto +7 more
2014Malaria Journal30 citations Open access
Semantic Scholar
Additional file 12: of Genetic determinants of anti-malarial acquired immunity in a large multi-centre study
Jennifer M. G. Shelton, P. Corran, P. Risley, N. Silva +53 more
2015Figshare29 citations Open access
Semantic Scholar
Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes
A. Ford, Daniel R. Kepple, B. Abagero, J. Connors +11 more
2020bioRxiv26 citations Open access
Semantic Scholar
Chloroquine efficacy for Plasmodium vivax in Myanmar in populations with high genetic diversity and moderate parasite gene flow
Myo Win Htun, Nan Cho Nwe Mon, K. M. Aye, Chan Myae Hlaing +8 more
2017Malaria Journal26 citations Open access
Semantic Scholar
Where chloroquine still works: the genetic make-up and susceptibility of Plasmodium vivax to chloroquine plus primaquine in Bhutan
S. Wangchuk, Tobgyel Drukpa, K. Penjor, Tashi Peldon +10 more
2016Malaria Journal26 citations Open access
Semantic Scholar
Dihydrofolate-Reductase Mutations in Plasmodium knowlesi Appear Unrelated to Selective Drug Pressure from Putative Human-To-Human Transmission in Sabah, Malaysia
M. Grigg, B. Barber, J. Marfurt, M. Imwong +12 more
2016PLoS ONE26 citations Open access
Semantic Scholar
Expression of Plasmodium vivax crt-o Is Related to Parasite Stage but Not Ex Vivo Chloroquine Susceptibility
Z. Pava, Irene Handayuni, Grennady Wirjanata, Sheren To +6 more
2015Antimicrobial Agents and Chemotherapy26 citations Open access
Semantic Scholar
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples [version 1; peer review: 2 approved]
Ambroise D. Ahouidi, Mozam Ali, J. Almagro-Garcia, A. Amambua-Ngwa +93 more
202124 citations
Semantic Scholar
VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations
Hidayat Trimarsanto, E. D. Benavente, Rintis Noviyanti, Retno A. S. Utami +13 more
2017PLoS Neglected Tropical Diseases24 citations Open access
Semantic Scholar
Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections
Z. Pava, Rintis Noviyanti, Irene Handayuni, Hidayat Trimarsanto +10 more
2017PLoS ONE23 citations Open access
Semantic Scholar
A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria
Hidayat Trimarsanto, R. Amato, R. Pearson, E. Sutanto +58 more
2022Communications Biology22 citations Open access
Semantic Scholar
Novel highly-multiplexed AmpliSeq targeted assay for Plasmodium vivax genetic surveillance use cases at multiple geographical scales
J. Kattenberg, H. Van Nguyen, H. Nguyen, Erin Sauve +10 more
2022Frontiers in Cellular and Infection Microbiology22 citations Open access
Semantic Scholar
Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years
Jung-Yeon Kim, Y. Goo, Y. Zo, So-Young Ji +5 more
2016PLoS ONE22 citations Open access
Semantic Scholar
Passively versus Actively Detected Malaria: Similar Genetic Diversity but Different Complexity of Infection
Z. Pava, Irene Handayuni, L. Trianty, Retno A. S. Utami +13 more
2017American Journal of Tropical Medicine and Hygiene21 citations Open access
Semantic Scholar
Pf8: an open dataset of Plasmodium falciparum genome variation in 33,325 worldwide samples
M. A. Abdel Hamid, M. H. Abdelraheem, D. O. Acheampong, Ishag Adam +110 more
2025Wellcome Open Research18 citations Open access
Semantic Scholar
Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites
Sasha V. Siegel, Hidayat Trimarsanto, R. Amato, Kathryn Murie +18 more
2024Nature Communications18 citations Open access
Semantic Scholar
Molecular markers for malaria genetic epidemiology: progress and pitfalls.
S. Ruybal-Pesántez, Kirsty McCann, Jessy Vibin, Sasha V. Siegel +2 more
2023Trends in Parasitology18 citations Open access
Semantic Scholar
Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1
Y. Hamedi, K. Sharifi-Sarasiabi, F. Dehghan, R. Safari +5 more
2016PLoS ONE18 citations Open access
Semantic Scholar
Molecular analysis demonstrates high prevalence of chloroquine resistance but no evidence of artemisinin resistance in Plasmodium falciparum in the Chittagong Hill Tracts of Bangladesh
M. Alam, Benedikt Ley, Maisha Khair Nima, F. Johora +6 more
2017Malaria Journal17 citations Open access
Semantic Scholar

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