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A. Rokem · SciRah

Researcher profile · Semantic Scholar

A. Rokem

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A. Rokem — researcher profile on SciRah

h-index: 47
Works: 188
Citations: 45K

Most-cited papers

SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen, R. Gommers, T. Oliphant, M. Haberland +107 more
2019Nature Methods36K citations Open access
Semantic Scholar
Deep-Learning Based, Automated Segmentation of Macular Edema in Optical Coherence Tomography
Cecilia S. Lee, Ariel J. Tyring, Nicolaas P. Deruyter, Yue Wu +2 more
2017bioRxiv321 citations Open access
Semantic Scholar
QSIPrep: An integrative platform for preprocessing and reconstructing diffusion MRI
M. Cieslak, Philip A. Cook, Xiao-Song He, Fang-Cheng F Yeh +38 more
2021Nature Methods281 citations Open access
Semantic Scholar
Rapid and widespread white matter plasticity during an intensive reading intervention
Elizabeth Huber, Patrick M. Donnelly, A. Rokem, Jason D. Yeatman
2018Nature Communications155 citations Open access
Semantic Scholar
A model of ganglion axon pathways accounts for percepts elicited by retinal implants
Michael Beyeler, D. Nanduri, J. Weiland, A. Rokem +2 more
2018Scientific Reports142 citations Open access
Semantic Scholar
Forecasting future Humphrey Visual Fields using deep learning
Joanne C. Wen, Cecilia S. Lee, P. Keane, Sa Xiao +4 more
2018bioRxiv141 citations Open access
Semantic Scholar
Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations
B. Chandio, S. Risacher, F. Pestilli, D. Bullock +5 more
2020Scientific Reports124 citations Open access
Semantic Scholar
Automated detection of glaucoma with interpretable machine learning using clinical data and multi-modal retinal images
Parmita Mehta, Christine A. Petersen, Joanne C. Wen, M. Banitt +7 more
2020bioRxiv110 citations Open access
Semantic Scholar
Generating retinal flow maps from structural optical coherence tomography with artificial intelligence
Cecilia S. Lee, Ariel J. Tyring, Yue Wu, Sa Xiao +6 more
2018Scientific Reports102 citations Open access
Semantic Scholar
Evaluating the Reliability of Human Brain White Matter Tractometry
J. Kruper, Jason D. Yeatman, Adam C. Richie-Halford, David Bloom +8 more
2021bioRxiv95 citations Open access
Semantic Scholar
Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging
A. Keshavan, Jason D. Yeatman, A. Rokem
2018bioRxiv77 citations Open access
Semantic Scholar
Fractional ridge regression: a fast, interpretable reparameterization of ridge regression
A. Rokem, Kendrick Norris Kay
2020GigaScience74 citations Open access
Semantic Scholar
Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project
R. Henriques, M. Correia, Maurizio Marrale, Elizabeth Huber +5 more
2021bioRxiv68 citations Open access
Semantic Scholar
QSIPrep: An integrative platform for preprocessing and reconstructing diffusion MRI
M. Cieslak, Philip A Cook, Xiao-Song He, Fang-Cheng Yeh +38 more
2020bioRxiv68 citations Open access
Semantic Scholar
The past, present, and future of the brain imaging data structure (BIDS)
R. Poldrack, Christopher J. Markiewicz, S. Appelhoff, Y. Ashar +111 more
2023Imaging Neuroscience63 citations Open access
Semantic Scholar
A browser-based tool for visualization and analysis of diffusion MRI data
Jason D. Yeatman, Adam C. Richie-Halford, Josh K. Smith, A. Keshavan +1 more
2018Nature Communications57 citations Open access
Semantic Scholar
Fully automated, deep learning segmentation of oxygen-induced retinopathy images.
Sa Xiao, F. Bucher, Yue Wu, A. Rokem +7 more
2017JCI Insight51 citations Open access
Semantic Scholar
Brainhack: developing a culture of open, inclusive, community-driven neuroscience
Rémi Gau, Stephanie Noble, K. Heuer, Katherine L. Bottenhorn +215 more
2021Neuron38 citations Open access
Semantic Scholar
“Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines”
Jonathan S. Bain, Jason D. Yeatman, Roey Schurr, A. Rokem +1 more
2019Human Brain Mapping37 citations Open access
Semantic Scholar
Human white matter myelinates faster in utero than ex utero
Mareike Grotheer, David Bloom, J. Kruper, Adam C. Richie-Halford +5 more
2023Proceedings of the National Academy of Sciences of the United States of America35 citations Open access
Semantic Scholar
Applying microstructural models to understand the role of white matter in cognitive development
Elizabeth Huber, R. Henriques, J. Owen, A. Rokem +1 more
2019Developmental Cognitive Neuroscience35 citations Open access
Semantic Scholar
nipy/nibabel: 3.2.1
Matthew T. Brett, C. Markiewicz, Michael Hanke, Marc-Alexandre Côté +84 more
202033 citations
Semantic Scholar
An analysis-ready and quality controlled resource for pediatric brain white-matter research
Adam C. Richie-Halford, M. Cieslak, Lei Ai, Sendy Caffarra +135 more
2022Scientific Data32 citations Open access
Semantic Scholar
Centering inclusivity in the design of online conferences-An OHBM-Open Science perspective.
E. Levitis, C. V. van Praag, Rémi Gau, Stephan Heunis +106 more
2021GigaScience29 citations Open access
Semantic Scholar
White matter and literacy: A dynamic system in flux
Ethan Roy, Adam C. Richie-Halford, J. Kruper, Manjari Narayan +9 more
2023bioRxiv28 citations Open access
Semantic Scholar
Confidence Intervals for Random Forests in Python
Kivan Polimis, A. Rokem, B. Hazelton
2017Journal of Open Source Software25 citations Open access
Semantic Scholar
Multidimensional analysis and detection of informative features in human brain white matter
Adam C. Richie-Halford, Jason D. Yeatman, N. Simon, A. Rokem
2021PLoS Comput. Biol.24 citations Open access
Semantic Scholar
Tractometry of Human Visual White Matter Pathways in Health and Disease
Hiromasa Takemura, John Kruper, Toshikazu Miyata, A. Rokem
2024Magnetic Resonance in Medical Sciences20 citations Open access
Semantic Scholar
Development of the Alpha Rhythm Is Linked to Visual White Matter Pathways and Visual Detection Performance
Sendy Caffarra, Klint Kanopka, J. Kruper, Adam C. Richie-Halford +3 more
2022Journal of Neuroscience20 citations Open access
Semantic Scholar
Abbreviated title: White matter development predicts visual responses Development of the visual white matter pathways mediates development of electrophysiological responses in visual cortex
Sendy Caffarra, Sung Jun Joo, David Bloom, J. Kruper +2 more
202119 citations
Semantic Scholar
On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge
A. de Luca, A. Ianuş, A. Leemans, M. Palombo +38 more
2021bioRxiv17 citations Open access
Semantic Scholar
Diffusion Weighted Image Co-registration: Investigation of Best Practices
D. Q. Chen, F. Dell'Acqua, A. Rokem, E. Garyfallidis +3 more
2019bioRxiv17 citations Open access
Semantic Scholar
Factors affecting two-point discrimination in Argus II patients
E. I. Yücel, R. Sadeghi, A. Kartha, S. Montezuma +5 more
2022Frontiers in Neuroscience16 citations Open access
Semantic Scholar
Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks
G. Kiar, Yohan Chatelain, Pablo de Oliveira Castro, É. Petit +5 more
2021PLoS ONE15 citations Open access
Semantic Scholar
Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison
U. Ferizi, B. Scherrer, T. Schneider, M. Alipoor +19 more
2017NMR in Biomedicine15 citations Open access
Semantic Scholar
Generalized Diffusion Spectrum Magnetic Resonance Imaging (GDSI) for Model-free Reconstruction of the Ensemble Average Propagator
Q. Tian, Grant Yang, Christoph Leuze, A. Rokem +2 more
2019NeuroImage14 citations Open access
Semantic Scholar
Diffusion MRI head motion correction methods are highly accurate but impacted by denoising and sampling scheme
M. Cieslak, Philip A Cook, G. Shafiei, Tinashe M. Tapera +9 more
2024Human Brain Mapping13 citations Open access
Semantic Scholar
Optic radiations representing different eccentricities age differently
J. Kruper, N. Benson, Sendy Caffarra, J. Owen +5 more
2022bioRxiv13 citations Open access
Semantic Scholar
Multilabel multiclass classification of OCT images augmented with age, gender and visual acuity data
Parmita Mehta, Aaron Y. Lee, Cecilia S. Lee, M. Balazinska +1 more
2018bioRxiv13 citations Open access
Semantic Scholar
Non-Stationary Dynamic Mode Decomposition
J. Ferre, A. Rokem, E. Buffalo, J. Kutz +1 more
2023IEEE Access11 citations Open access
Semantic Scholar
Assessing Reproducibility
A. Rokem, B. Marwick, Valentina Staneva
2019The Practice of Reproducible Research11 citations
Semantic Scholar
NiPreps: enabling the division of labor in neuroimaging beyond fMRIPrep
O. Esteban, J. Wright, Christopher J. Markiewicz, W. Thompson +7 more
201910 citations Open access
Semantic Scholar
Model-Based Recommendations for Optimal Surgical Placement of Epiretinal Implants
Michael Beyeler, G. Boynton, I. Fine, A. Rokem
2019bioRxiv9 citations Open access
Semantic Scholar
Cloudknot: A Python Library to Run your Existing Code on AWS Batch
Adam C. Richie-Halford, A. Rokem
2018SciPy9 citations Open access
Semantic Scholar
Explainable Machine Learning Predictions of Perceptual Sensitivity for Retinal Prostheses
Galen Pogoncheff, Zu-Ying Hu, A. Rokem, Michael Beyeler
2023medRxiv8 citations Open access
Semantic Scholar
diff_classifier: Parallelization of multi-particle tracking video analyses
Chad Curtis, A. Rokem, Elizabeth Nance
2019Journal of Open Source Software8 citations Open access
Semantic Scholar
Bifurcated Topological Optimization for IVIM
Shreyas Fadnavis, S. Endres, Qiu-Ting Wen, Yu-Chien Wu +5 more
2021Frontiers in Neuroscience7 citations Open access
Semantic Scholar
dMRIPrep: a robust preprocessing pipeline for diffusion MRI
Michael Joseph, D. Pisner, Adam C. Richie-Halford, G. Lerma-Usabiaga +3 more
20206 citations
Semantic Scholar
Multidimensional analysis and detection of informative features in diffusion MRI measurements of human white matter
Adam C. Richie-Halford, Jason D. Yeatman, N. Simon, A. Rokem
2019bioRxiv6 citations Open access
Semantic Scholar
Incremental improvements in tractometry-based brain-age modeling with deep learning
A. Rokem, Joanna Qiao, Jason D. Yeatman, Adam C. Richie-Halford
2023bioRxiv5 citations Open access
Semantic Scholar

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