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Louise H. Moncla · SciRah

Researcher profile · Semantic Scholar

Louise H. Moncla

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Louise H. Moncla — researcher profile on SciRah

h-index: 22
Works: 63
Citations: 2,648

Most-cited papers

The global H5N1 influenza panzootic in mammals
T. Peacock, Louise H. Moncla, G. Dudas, David VanInsberghe +5 more
2024Nature408 citations
Semantic Scholar
A rhesus macaque model of Asian-lineage Zika virus infection
D. Dudley, M. Aliota, E. Mohr, A. Weiler +23 more
2016Nature Communications375 citations Open access
Semantic Scholar
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes
Claudia P. Arevalo, M. Bolton, Valerie Le Sage, Nai-Qing Ye +14 more
2022Science305 citations Open access
Semantic Scholar
Cryptic transmission of SARS-CoV-2 in Washington state
T. Bedford, A. Greninger, Pavitra Roychoudhury, L. Starita +52 more
2020Science294 citations Open access
Semantic Scholar
SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data
Chase W. Nelson, Louise H. Moncla, A. Hughes
2015Bioinform.165 citations Open access
Semantic Scholar
Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks
K. Braun, G. Moreno, Cassia Wagner, M. Accola +7 more
2021PLoS Pathogens110 citations Open access
Semantic Scholar
Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans
J. Dinis, Kelsey R. Florek, Omolayo O. Fatola, Louise H. Moncla +5 more
2016Journal of Virology105 citations Open access
Semantic Scholar
Within-host evolution of human influenza virus
Katherine S. Xue, Louise H. Moncla, T. Bedford, J. Bloom
2018Trends in Microbiology102 citations Open access
Semantic Scholar
Selective bottlenecks shape evolutionary pathways taken during mammalian adaptation of a 1918-like avian influenza virus
Louise H. Moncla, G. Zhong, Chase W. Nelson, J. Dinis +5 more
2016Cell Host and Microbe69 citations Open access
Semantic Scholar
Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans
Yq Shirleen Soh, Louise H. Moncla, Rachel T. Eguia, T. Bedford +1 more
2019eLife64 citations Open access
Semantic Scholar
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
Nicola Felix Mueller, Cassia Wagner, Chris D. Frazar, Pavitra Roychoudhury +39 more
2020medRxiv54 citations Open access
Semantic Scholar
Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance
Bernadeta Dadonaite, Jenny J. Ahn, Jordan T. Ort, Jin Yu +11 more
2024PLoS Biology52 citations Open access
Semantic Scholar
A Novel Nonhuman Primate Model for Influenza Transmission
Louise H. Moncla, T. Ross, J. Dinis, J. Weinfurter +10 more
2013PLoS ONE52 citations Open access
Semantic Scholar
A Single Mutation in the VP1 of Enterovirus 71 Is Responsible for Increased Virulence and Neurotropism in Adult Interferon-Deficient Mice
Elizabeth A. Caine, Louise H. Moncla, M. Ronderos, T. Friedrich +1 more
2016Journal of Virology48 citations Open access
Semantic Scholar
Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance
Bernadeta Dadonaite, Jenny J. Ahn, Jordan T. Ort, Jin Yu +11 more
2024bioRxiv43 citations Open access
Semantic Scholar
Influenza A(H5N1) Immune Response among Ferrets with Influenza A(H1N1)pdm09 Immunity
Valerie Le Sage, Bailee D. Werner, Grace A Merrbach, Sarah E. Petnuch +11 more
2025Emerging Infectious Diseases38 citations Open access
Semantic Scholar
Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia
Louise H. Moncla, T. Bedford, P. Dussart, S. Horm +9 more
2020PLoS Pathogens34 citations Open access
Semantic Scholar
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients
Andrew D. Marques, J. Graham-Wooten, Ayannah S. Fitzgerald, Ashley Sobel Leonard +7 more
2024mBio32 citations Open access
Semantic Scholar
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
N. Müller, C. Wagner, Chris D. Frazar, Pavitra Roychoudhury +39 more
2021Science Translational Medicine32 citations Open access
Semantic Scholar
Pandemic risk stemming from the bovine H5N1 outbreak: an account of the knowns and unknowns
Anice C. Lowen, A. Baker, Andrew S. Bowman, Adolfo García-Sastre +11 more
2025Journal of Virology25 citations Open access
Semantic Scholar
Ecology and spread of the North American H5N1 epizootic
Lambodhar Damodaran, Anna S. Jaeger, Louise H. Moncla
2025Nature23 citations Open access
Semantic Scholar
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State
Louise H. Moncla, A. Black, C. DeBolt, M. Lang +6 more
2020medRxiv23 citations Open access
Semantic Scholar
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
Allison Black, Louise H. Moncla, K. Laiton-Donato, Barney I. Potter +10 more
2018bioRxiv22 citations Open access
Semantic Scholar
Emergence of Oseltamivir-Resistant H7N9 Influenza Viruses in Immunosuppressed Cynomolgus Macaques
M. Kiso, Kiyoko Iwatsuki-Horimoto, S. Yamayoshi, Ryuta Uraki +16 more
2017Journal of Infectious Diseases19 citations
Semantic Scholar
Divergent Simian Arteriviruses Cause Simian Hemorrhagic Fever of Differing Severities in Macaques
V. Wahl-Jensen, Joshua C. Johnson, M. Lauck, J. Weinfurter +22 more
2016mBio17 citations Open access
Semantic Scholar
Diversity of Influenza A(H5N1) Viruses in Infected Humans, Northern Vietnam, 2004–2010
H. Imai, J. Dinis, G. Zhong, Louise H. Moncla +17 more
2018Emerging Infectious Diseases15 citations Open access
Semantic Scholar
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county
Miguel I. Paredes, A. Perofsky, L. Frisbie, Louise H. Moncla +27 more
2022medRxiv14 citations Open access
Semantic Scholar
The evolution and epidemiology of H3N2 canine influenza virus after 20 years in dogs
B. Wasik, Lambodhar Damodaran, Maria A. Maltepes, Ian E. H. Voorhees +6 more
2024bioRxiv13 citations Open access
Semantic Scholar
Pre-existing H1N1 immunity reduces severe disease with bovine H5N1 influenza virus
Valerie Le Sage, Bailee D. Werner, Grace A Merrbach, Sarah E. Petnuch +11 more
2024bioRxiv11 citations
Semantic Scholar
Intensive transmission in wild, migratory birds drove rapid geographic dissemination and repeated spillovers of H5N1 into agriculture in North America
Lambodhar Damodaran, Anna S. Jaeger, Louise H. Moncla
2024bioRxiv11 citations Open access
Semantic Scholar
Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals
K. Braun, Luis A. Haddock, C. Crooks, Gabrielle L. Barry +10 more
2022bioRxiv11 citations Open access
Semantic Scholar
Limited within-host diversity and tight transmission bottlenecks limit SARS-CoV-2 evolution in acutely infected individuals
K. Braun, G. Moreno, Cassia Wagner, M. Accola +7 more
2021bioRxiv11 citations Open access
Semantic Scholar
Tracking dengue virus type 1 genetic diversity during lineage replacement in an hyperendemic area in Colombia
Mauricio A Salvo, M. Aliota, Louise H. Moncla, I. Velez +3 more
2019PLoS ONE9 citations Open access
Semantic Scholar
Natural history of Asian lineage Zika virus infection in macaques
D. Dudley, M. Aliota, E. Mohr, A. Weiler +21 more
20167 citations Open access
Semantic Scholar
Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status
Ashley Sobel Leonard, Lydia M Mendoza, Alexander G. McFarland, Andrew D. Marques +5 more
2024Virus Evolution5 citations
Semantic Scholar
Influenza Evolution: New Insights into an Old Foe.
Louise H. Moncla, Nicholas W. Florek, T. Friedrich
2017Trends in Microbiology5 citations
Semantic Scholar
Correction for Dinis et al., Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans
J. Dinis, Kelsey R. Florek, Omolayo O. Fatola, Louise H. Moncla +5 more
2016Journal of Virology5 citations Open access
Semantic Scholar
The emergence and molecular evolution of H5N1 influenza viruses in United States dairy cattle
J. Pekar, K. Gangavarapu, Alvin Crespo-Bellido, Thomas P. Peacock +22 more
2026bioRxiv4 citations
Semantic Scholar
Emergence and epidemiology of dominant variants of human metapneumovirus in the United States between 2016 and 2021
L. Pless, Lambodar Damodaran, Ray Pomponio, Rose Patrick +12 more
2026mBio4 citations Open access
Semantic Scholar
Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment
Jordan T. Ort, Sonja A. Zolnoski, T. T. Lam, R. Neher +1 more
2025bioRxiv4 citations Open access
Semantic Scholar
Within-Host Evolution of Simian Arteriviruses in Crab-Eating Macaques
Louise H. Moncla, A. Weiler, Gabrielle L. Barry, J. Weinfurter +13 more
2016Journal of Virology4 citations Open access
Semantic Scholar
Controlling bird flu is urgent-for dairy, wildlife, poultry, pets, and people.
Anice C. Lowen, Andrew S. Bowman, Jonathan A. Runstadler, Amy Baker +11 more
2025Journal of the American Veterinary Medical Association3 citations
Semantic Scholar
Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment
Jordan T. Ort, Samuel S. Shepard, Sonja A. Zolnoski, T. T. Lam +3 more
2025Virus Evolution3 citations Open access
Semantic Scholar
Frequent seasonal reassortment between high and low path viruses drives the diversification of influenza A/H5N1
Lambodhar Damodaran, J. Lewnard, G. Davis, S. Tartof +2 more
2026bioRxiv2 citations Open access
Semantic Scholar
Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogens
Kimberly R. Andrews, Jennifer Chang, Cornelius Roemer, James Hadfield +20 more
2026bioRxiv2 citations Open access
Semantic Scholar
Fatal Human H3N8 Influenza Virus has a Moderate Pandemic Risk
Valerie Le Sage, Michelle N. Vu, Maria A. Maltepes, Sheng-Yang Wang +13 more
2025bioRxiv2 citations Open access
Semantic Scholar
Within- and between-host dynamics of highly pathogenic avian influenza in domestic birds from Pennsylvania farms and live bird markets
Anna S. Jaeger, Elena Cruz-Adames, S. Shank, Irina Chupikova +4 more
2026bioRxiv1 citations Open access
Semantic Scholar
Fatal human H3N8 influenza virus has a moderate pandemic risk
Valerie Le Sage, Michelle N. Vu, Maria A. Maltepes, Sheng-Yang Wang +13 more
2026PLoS Pathogens0 citations Open access
Semantic Scholar
Host type governs influenza evolutionary strategy across reservoir and spillover hosts
Maria A. Maltepes, Alexey Markin, S. Shank, Jordan T. Ort +6 more
2026bioRxiv0 citations Open access
Semantic Scholar
Dynamics and control of highly pathogenic H5 avian influenza in a threatened pelican population
Qi-Qi Yang, O. Alexandrou, Ú. Höfle, Sara Minayo Martín +6 more
2026bioRxiv0 citations Open access
Semantic Scholar

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