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F. Seifuddin · SciRah

Researcher profile · Semantic Scholar

F. Seifuddin

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F. Seifuddin — researcher profile on SciRah

h-index: 25
Works: 69
Citations: 2,828

Most-cited papers

SMURF: genomic mapping of fungal secondary metabolite clusters
N. Khaldi, F. Seifuddin, G. Turner, D. Haft +3 more
2010Fungal Genetics and Biology734 citations Open access
Semantic Scholar
A genome-wide association study of attempted suicide
Virginia L. Willour, F. Seifuddin, P. Mahon, D. Jančić +23 more
2011Molecular Psychiatry153 citations Open access
Semantic Scholar
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
W. Xiao, Luyao Ren, Zhong Chen, Li Tai Fang +86 more
2021Nature Biotechnology151 citations Open access
Semantic Scholar
Polygenic risk, stressful life events and depressive symptoms in older adults: A polygenic score analysis
K. Musliner, F. Seifuddin, Jennifer Judy, M. Pirooznia +2 more
2014Psychological Medicine125 citations Open access
Semantic Scholar
Cell-free DNA maps COVID-19 tissue injury and risk of death and can cause tissue injury
T. Andargie, N. Tsuji, F. Seifuddin, M. Jang +11 more
2021JCI Insight122 citations Open access
Semantic Scholar
Circulating mitochondrial DNA is a pro-inflammatory DAMP in sickle cell disease.
Laxminath Tumburu, Shohini K Ghosh-Choudhary, F. Seifuddin, E. Barbu +18 more
2021Blood112 citations Open access
Semantic Scholar
Alterations in DNA Methylation of Fkbp5 as a Determinant of Blood-brain Correlation of Glucocorticoid Exposure
Erin R. Ewald, G. Wand, F. Seifuddin, Xiao-Ju Yang +4 more
2014Psychoneuroendocrinology109 citations Open access
Semantic Scholar
Meta-Analysis of Genetic Association Studies on Bipolar Disorder
F. Seifuddin, P. Mahon, J. Judy, M. Pirooznia +5 more
2012American Journal of Medical Genetics Part B: Neuropsychiatric Genetics89 citations Open access
Semantic Scholar
Neutrophil Subsets, Platelets, and Vascular Disease in Psoriasis
H. Teague, Nevin J. Varghese, L. Tsoi, Amit K. Dey +28 more
2019JACC: Basic to Translational Science88 citations Open access
Semantic Scholar
In vivo functional analysis of non-conserved human lncRNAs associated with cardiometabolic traits
Xiangbo Ruan, Ping Li, Yi Chen, Yu Shi +12 more
2020Nature Communications87 citations Open access
Semantic Scholar
Systematic review of genome-wide gene expression studies of bipolar disorder
F. Seifuddin, M. Pirooznia, J. Judy, Fernando S. Goes +2 more
2013BMC Psychiatry80 citations Open access
Semantic Scholar
Genome-wide association of mood-incongruent psychotic bipolar disorder
Fernando S. Goes, M. Hamshere, F. Seifuddin, M. Pirooznia +10 more
2012Translational Psychiatry60 citations Open access
Semantic Scholar
Fasting-induced FOXO4 blunts human CD4+ T helper cell responsiveness
Kim Han, Komudi Singh, Matthew J Rodman, S. Hassanzadeh +14 more
2021Nature Metabolism58 citations Open access
Semantic Scholar
Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal down-regulated neuroimmune and synaptic pathways
P. Zandi, A. Jaffe, Fernando S. Goes, Emily E. Burke +10 more
2022Nature Neuroscience57 citations Open access
Semantic Scholar
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA
F. Seifuddin, Komudi Singh, Abhilash Suresh, J. Judy +12 more
2020Scientific Data57 citations Open access
Semantic Scholar
High density lipoprotein proteome is associated with cardiovascular risk factors and atherosclerosis burden as evaluated by coronary CT angiography
S. Gordon, Jonathan H. Chung, M. Playford, A. Dey +7 more
2018Atherosclerosis54 citations Open access
Semantic Scholar
Genome-wide association analysis of age at onset and psychotic symptoms in bipolar disorder
P. Mahon, M. Pirooznia, Fernando S. Goes, F. Seifuddin +17 more
2011American Journal of Medical Genetics Part B: Neuropsychiatric Genetics52 citations Open access
Semantic Scholar
Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Komudi Singh, Yun-Ching Chen, S. Hassanzadeh, Kim Han +5 more
2021Frontiers in Genetics48 citations Open access
Semantic Scholar
Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Komudi Singh, Yun-Ching Chen, J. Judy, F. Seifuddin +2 more
2020bioRxiv47 citations Open access
Semantic Scholar
Data Mining Approaches for Genome-Wide Association of Mood Disorders
M. Pirooznia, F. Seifuddin, J. Judy, P. Mahon +2 more
2012International Conference on Bioinformatics & Computational Biology44 citations Open access
Semantic Scholar
Genome-wide Methyl-Seq analysis of blood-brain targets of glucocorticoid exposure
F. Seifuddin, G. Wand, Olivia Cox, M. Pirooznia +7 more
2017Epigenetics41 citations Open access
Semantic Scholar
Identification of human long non-coding RNAs associated with nonalcoholic fatty liver disease and metabolic homeostasis.
Xiangbo Ruan, Ping Li, Yong-He Ma, Cheng-Fei Jiang +14 more
2020Journal of Clinical Investigation40 citations Open access
Semantic Scholar
Acetylation-mediated remodeling of the nucleolus regulates cellular acetyl-CoA responses
Ryan Houston, Shiori Sekine, Michael J. Calderon, F. Seifuddin +14 more
2020PLoS Biology39 citations Open access
Semantic Scholar
Converging Evidence for Epistasis between ANK3 and Potassium Channel Gene KCNQ2 in Bipolar Disorder
J. Judy, F. Seifuddin, M. Pirooznia, P. Mahon +9 more
2013Frontiers in Genetics35 citations Open access
Semantic Scholar
Differentially methylated regions in bipolar disorder and suicide
M. Gaine, F. Seifuddin, S. Sabunciyan, Richard S. Lee +5 more
2019American Journal of Medical Genetics Part B: Neuropsychiatric Genetics26 citations Open access
Semantic Scholar
Plasma Cell-free DNA Predicts Survival and Maps Specific Sources of Injury in Pulmonary Arterial Hypertension
S. Brusca, J. Elinoff, Yvette Zou, M. Jang +17 more
2022Circulation25 citations Open access
Semantic Scholar
Investigating the role of early childhood abuse and HPA axis genes in suicide attempters with bipolar disorder
M. Breen, F. Seifuddin, P. Zandi, J. Potash +1 more
2015Psychiatric Genetics25 citations Open access
Semantic Scholar
βT87Q-Globin Gene Therapy Reduces Sickle Hemoglobin Production, Allowing for Ex Vivo Anti-sickling Activity in Human Erythroid Cells
Selami Demirci, Bjorg Gudmundsdottir, Quan Li, J. Haro-Mora +7 more
2020Molecular Therapy: Methods & Clinical Development24 citations Open access
Semantic Scholar
Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences
Richard S. Lee, K. L. Tamashiro, M. Aryee, P. Murakami +7 more
2011Epigenetics23 citations Open access
Semantic Scholar
Genome-Wide Analysis of Off-Target CRISPR/Cas9 Activity in Single-Cell-Derived Human Hematopoietic Stem and Progenitor Cell Clones
Richard H. Smith, Yun-Ching Chen, F. Seifuddin, D. Hupalo +8 more
2020Genes22 citations Open access
Semantic Scholar
Association Study of Serotonin Pathway Genes in Attempted Suicide
J. Judy, F. Seifuddin, P. Mahon, Y. Huo +12 more
2011American Journal of Medical Genetics Part B: Neuropsychiatric Genetics22 citations Open access
Semantic Scholar
NOTCH-mediated ex vivo expansion of human hematopoietic stem and progenitor cells by culture under hypoxia
Daisuke Araki, Jian-Fei Fu, Heather D. Huntsman, Stefan Cordes +9 more
2021Stem Cell Reports20 citations Open access
Semantic Scholar
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Yun-Ching Chen, Abhilash Suresh, Chingiz Underbayev, Clare Sun +4 more
2019bioRxiv20 citations Open access
Semantic Scholar
Apolipoprotein E Signals via TLR4 to Induce CXCL5 Secretion by Asthmatic Airway Epithelial Cells.
O. Kalchiem-Dekel, Xiang-Lan Yao, Amisha V. Barochia, Maryann M. Kaler +11 more
2020American Journal of Respiratory Cell and Molecular Biology19 citations Open access
Semantic Scholar
Metamoodics: Meta-analysis and Bioinformatics Resource for Mood Disorders
M. Pirooznia, F. Seifuddin, J. Judy, Fernando S. Goes +2 more
2013Molecular Psychiatry15 citations Open access
Semantic Scholar
Genetic variants of PKLR are associated with acute pain in sickle cell disease
Xun-De Wang, K. Gardner, Mickias B. Tegegn, C. Dalgard +7 more
2022Blood Advances14 citations Open access
Semantic Scholar
Glucocorticoid receptor regulates protein chaperone, circadian clock and affective disorder genes in the zebrafish brain
H. Eachus, Lara Oberski, Jack Paveley, Irina-Alexandra Bacila +8 more
2023Disease Models & Mechanisms12 citations Open access
Semantic Scholar
Early Myeloid Derived Suppressor Cells (eMDSCs) Are Associated With High Donor Myeloid Chimerism Following Haploidentical HSCT for Sickle Cell Disease
Deepali K. Bhat, P. Olkhanud, Arunakumar Gangaplara, F. Seifuddin +10 more
2021Frontiers in Immunology10 citations Open access
Semantic Scholar
Effect of Genotype and Maternal Affective Disorder on Intronic Methylation of FK506 Binding Protein 5 in Cord Blood DNA
J. Duis, Olivia Cox, Yue-Long Ji, F. Seifuddin +2 more
2018Frontiers in Genetics10 citations Open access
Semantic Scholar
Integrated cell-free DNA and cytokine analysis uncovers distinct tissue injury and immune response patterns in solid organ transplant recipients with COVID-19
T. Andargie, Wei-Qiang Zhou, A. Karaba, Tai-Bo Li +12 more
2022Research Square7 citations Open access
Semantic Scholar
Comprehensive Assessment of Somatic Copy Number Variation Calling Using Next-Generation Sequencing Data
Yun-Ching Chen, F. Seifuddin, Cu Nguyen, Zhao-Wei Yang +7 more
2021bioRxiv7 citations Open access
Semantic Scholar
Case-Control Association Study of TGOLN2 in Attempted Suicide
P. Mahon, A. Stütz, F. Seifuddin, Y. Huo +9 more
2010American Journal of Medical Genetics Part B: Neuropsychiatric Genetics7 citations Open access
Semantic Scholar
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies
M. Pirooznia, F. Seifuddin, Fernando S. Goes, J. Leek +1 more
2013Source Code for Biology and Medicine6 citations Open access
Semantic Scholar
Cell-Free Mitochondrial DNA Is Elevated in Sickle Cell Disease Patients, and Serve As a Potential Proinflammatory DAMP
Laxminath Tumburu, Shohini K Ghosh-Choudhary, E. Barbu, Simon Yang +6 more
2018Blood5 citations Open access
Semantic Scholar
Misregulation of ELK1, AP1, and E12 Transcription Factor Networks Is Associated with Melanoma Progression
Komudi Singh, Michelle A. Baird, R. Fischer, V. Chaitankar +5 more
2020Cancers4 citations Open access
Semantic Scholar
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA
F. Seifuddin, Komudi Singh, Abhilash Suresh, J. Judy +12 more
2020Scientific Data4 citations Open access
Semantic Scholar
Association study of X chromosome SNPs in attempted suicide
D. Jančić, F. Seifuddin, P. Zandi, J. Potash +1 more
2012Psychiatry Research4 citations Open access
Semantic Scholar
Implementation of the Methyl-Seq platform to identify tissue- and sex-specific DNA methylation differences in the rat epigenome
Olivia H. Cox, F. Seifuddin, J. Guo, Mehdi Pirooznia +4 more
2024Epigenetics3 citations Open access
Semantic Scholar
lncRNAKB: A comprehensive knowledgebase of long non-coding RNAs
F. Seifuddin, Komudi Singh, Abhilash Suresh, Yun-Ching Chen +11 more
2019bioRxiv3 citations Open access
Semantic Scholar
A Rat Methyl-Seq Platform to Identify Epigenetic Changes Associated with Stress Exposure
Jenny L. Carey, Olivia Cox, F. Seifuddin, Leonard O. Marque +4 more
2018Journal of Visualized Experiments3 citations Open access
Semantic Scholar

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