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D. Baurain · SciRah

Researcher profile · Semantic Scholar

D. Baurain

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D. Baurain — researcher profile on SciRah

h-index: 37
Works: 148
Citations: 6,506

Most-cited papers

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals.
P. Simion, H. Philippe, D. Baurain, M. Jager +12 more
2017Current Biology477 citations Open access
Semantic Scholar
Impact of missing data on phylogenies inferred from empirical phylogenomic data sets.
B. Roure, D. Baurain, H. Philippe
2013Molecular biology and evolution349 citations Open access
Semantic Scholar
Phylotranscriptomic consolidation of the jawed vertebrate timetree
I. Irisarri, D. Baurain, H. Brinkmann, F. Delsuc +7 more
2017Nature Ecology & Evolution269 citations Open access
Semantic Scholar
Cyanobacteria evolution: Insight from the fossil record
Catherine F Demoulin, Y. Lara, L. Cornet, C. François +3 more
2019Free Radical Biology & Medicine177 citations Open access
Semantic Scholar
Pitfalls in supermatrix phylogenomics
H. Philippe, D. de Vienne, V. Ranwez, B. Roure +2 more
2017162 citations Open access
Semantic Scholar
Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences
A. Di Franco, Raphäel Poujol, D. Baurain, H. Philippe
2019BMC Evolutionary Biology152 citations Open access
Semantic Scholar
Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)
Jörn Petersen, Ann-Kathrin Ludewig, Victoria Michael, B. Bunk +3 more
2014Genome Biology and Evolution114 citations Open access
Semantic Scholar
Bryophytes are predicted to lag behind future climate change despite their high dispersal capacities
F. Zanatta, Robin Engler, F. Collart, O. Broennimann +6 more
2020Nature Communications95 citations Open access
Semantic Scholar
Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle
N. Kadri, C. Harland, P. Faux, Nadine Cambisano +10 more
2016Genome Research84 citations Open access
Semantic Scholar
Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation
Marta Maciejewska, Delphine Adam, Aymeric Naômé, L. Martinet +9 more
2017bioRxiv80 citations Open access
Semantic Scholar
Rooting the tree of life: the phylogenetic jury is still out
Richard Gouy, D. Baurain, H. Philippe
2015Philosophical Transactions of the Royal Society B: Biological Sciences79 citations Open access
Semantic Scholar
Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits
Delphine Adam, Marta Maciejewska, Aymeric Naômé, L. Martinet +4 more
2018Antibiotics77 citations Open access
Semantic Scholar
A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits
Marta Maciejewska, Delphine Adam, L. Martinet, Aymeric Naômé +10 more
2016Frontiers in Microbiology76 citations Open access
Semantic Scholar
Contamination detection in genomic data: more is not enough
L. Cornet, D. Baurain
2022Genome Biology75 citations Open access
Semantic Scholar
The mitochondrial respiratory chain of the secondary green alga Euglena gracilis shares many additional subunits with parasitic Trypanosomatidae.
Emilie Perez, Marie Lapaille, H. Degand, Laura Cilibrasi +7 more
2014Mitochondrion (Amsterdam. Print)59 citations Open access
Semantic Scholar
Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches.
Ariel Rodríguez, J. D. Burgon, Mariana L. Lyra, I. Irisarri +11 more
2017Molecular Phylogenetics and Evolution55 citations Open access
Semantic Scholar
Consensus assessment of the contamination level of publicly available cyanobacterial genomes
L. Cornet, L. Meunier, Mick Van Vlierberghe, Raphaël R. Léonard +8 more
2018bioRxiv44 citations Open access
Semantic Scholar
Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics
V. Lupo, Mick Van Vlierberghe, H. Vanderschuren, F. Kerff +2 more
2021Frontiers in Microbiology42 citations Open access
Semantic Scholar
Nonribosomal peptides in fungal cell factories: from genome mining to optimized heterologous production.
Antoine Vassaux, L. Meunier, M. Vandenbol, D. Baurain +3 more
2019Biotechnology Advances37 citations Open access
Semantic Scholar
On the use of high‐throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats
I. Pessi, P. de Carvalho Maalouf, H. Laughinghouse, D. Baurain +1 more
2016Journal of Phycology37 citations
Semantic Scholar
Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures
L. Cornet, Amandine R. Bertrand, M. Hanikenne, E. Javaux +2 more
2018Microbial Genomics35 citations Open access
Semantic Scholar
Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors
M. Joris, M. Schloesser, D. Baurain, M. Hanikenne +2 more
2017Nucleic Acids Research34 citations Open access
Semantic Scholar
Phylogenomic Analyses of Snodgrassella Isolates from Honeybees and Bumblebees Reveal Taxonomic and Functional Diversity
L. Cornet, Ilse Cleenwerck, Jessy Praet, Raphaël R. Léonard +5 more
2021bioRxiv32 citations Open access
Semantic Scholar
Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida)
M. Hanikenne, D. Baurain
2013Frontiers in Plant Science30 citations Open access
Semantic Scholar
A Fast-Growing Oleaginous Strain of Coelastrella Capable of Astaxanthin and Canthaxanthin Accumulation in Phototrophy and Heterotrophy
A. Corato, Thanh Tung Le, D. Baurain, P. Jacques +2 more
2022Life23 citations Open access
Semantic Scholar
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project
Mick Van Vlierberghe, A. Di Franco, H. Philippe, D. Baurain
2021BMC Research Notes23 citations Open access
Semantic Scholar
High-Throughput Sequencing Analysis of the Actinobacterial Spatial Diversity in Moonmilk Deposits
Marta Maciejewska, M. Calusinska, L. Cornet, Delphine Adam +7 more
2018Antibiotics22 citations Open access
Semantic Scholar
Trophic state alters the mechanism whereby energetic coupling between photosynthesis and respiration occurs in Euglena gracilis
Gwenaëlle Gain, Félix Vega de Luna, Javier Córdoba, Emilie Perez +6 more
2021New Phytologist18 citations Open access
Semantic Scholar
The taxonomy of the Trichophyton rubrum complex: a phylogenomic approach
L. Cornet, E. D'hooge, N. Magain, D. Stubbe +3 more
2021Microbial Genomics18 citations Open access
Semantic Scholar
De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis
Javier Córdoba, Emilie Perez, Mick Van Vlierberghe, Amandine R. Bertrand +3 more
2021Genes18 citations Open access
Semantic Scholar
Human Chitotriosidase: Catalytic Domain or Carbohydrate Binding Module, Who’s Leading HCHT’s Biological Function
Oscar Crasson, G. Courtade, Raphaël R. Léonard, F. Aachmann +6 more
2017Scientific Reports17 citations Open access
Semantic Scholar
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
L. Cornet, B. Durieu, Frederik Baert, E. D'hooge +12 more
2022bioRxiv15 citations Open access
Semantic Scholar
Draft Genome Sequence of the Axenic Strain Phormidesmis priestleyi ULC007, a Cyanobacterium Isolated from Lake Bruehwiler (Larsemann Hills, Antarctica)
Y. Lara, B. Durieu, L. Cornet, Olivier Verlaine +7 more
2017Genome Announcements15 citations Open access
Semantic Scholar
A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria)
L. Cornet, A. Wilmotte, E. Javaux, D. Baurain
2018BMC Research Notes14 citations Open access
Semantic Scholar
An Extended Reservoir of Class-D Beta-Lactamases in Non-Clinical Bacterial Strains
V. Lupo, P. Mercuri, J. Frère, B. Joris +3 more
2022bioRxiv13 citations Open access
Semantic Scholar
Lower Statistical Support with Larger Data Sets: Insights from the Ochrophyta Radiation
A. Di Franco, D. Baurain, G. Glöckner, M. Melkonian +1 more
2021bioRxiv13 citations Open access
Semantic Scholar
High-throughput sequencing analysis reveals the genetic diversity of different regions of the murine norovirus genome during in vitro replication
A. Mauroy, B. Taminiau, C. Nezer, Elsa Ghurburrun +3 more
2016Archives of Virology10 citations
Semantic Scholar
Was the Last Bacterial Common Ancestor a Monoderm after All?
Raphaël R. Léonard, E. Sauvage, V. Lupo, A. Perrin +4 more
2022Genes9 citations Open access
Semantic Scholar
ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies
Raphaël R. Léonard, Marie Leleu, Mick Van Vlierberghe, Luc Cornet +2 more
2017bioRxiv8 citations Open access
Semantic Scholar
Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria and cyanolichens.
L. Cornet, N. Magain, D. Baurain, F. Lutzoni
2021Molecular Phylogenetics and Evolution7 citations
Semantic Scholar
Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
L. Meunier, P. Tocquin, L. Cornet, D. Sirjacobs +4 more
2020Bioinform.6 citations Open access
Semantic Scholar
Complete Genome Sequence of Streptomyces lunaelactis MM109T, Isolated from Cave Moonmilk Deposits
Aymeric Naômé, Marta Maciejewska, M. Calusinska, L. Martinet +11 more
2018Genome Announcements6 citations Open access
Semantic Scholar
PREDetector 2.0: Online and Enhanced Version of the Prokaryotic Regulatory Elements Detector Tool
P. Tocquin, Aymeric Naômé, Samuel Jourdan, S. Anderssen +5 more
2016bioRxiv6 citations Open access
Semantic Scholar
Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages
Mick Van Vlierberghe, H. Philippe, D. Baurain
2021BMC Research Notes5 citations Open access
Semantic Scholar
AMAW: automated gene annotation for non-model eukaryotic genomes
L. Meunier, D. Baurain, L. Cornet
2021bioRxiv5 citations Open access
Semantic Scholar
A Unique LHCE Light-Harvesting protein Family is involved in Photosystem I and II Far-Red Absorption in Euglena gracilis
H. Miranda-Astudillo, Rameez Arshad, Félix Vega de Luna, Zhaida I. Aguilar-Gonzalez +11 more
2025bioRxiv4 citations Open access
Semantic Scholar
Gram-Negative Bacteria: “Inner” vs. “Cytoplasmic” or “Plasma Membrane”: A Question of Clarity rather than Vocabulary
D. Baurain, A. Wilmotte, J. Frère
20164 citations
Semantic Scholar
The unusual Gasteromycetes Lycogalopsis solmsii belongs to the gomphoid-phalloid group
V. Demoulin, L. Cornet, Emilie Delbruyère, D. Baurain
20134 citations Open access
Semantic Scholar
ORPER: A Workflow for Constrained SSU rRNA Phylogenies
L. Cornet, Anne-Catherine Ahn, A. Wilmotte, D. Baurain
2021bioRxiv3 citations Open access
Semantic Scholar
CRitical Assessment of genomic COntamination detection at several Taxonomic ranks (CRACOT)
L. Cornet, V. Lupo, S. Declerck, D. Baurain
2023bioRxiv2 citations Open access
Semantic Scholar

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