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Jop Kind · SciRah

Researcher profile · Semantic Scholar

Jop Kind

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Jop Kind — researcher profile on SciRah

h-index: 28
Works: 59
Citations: 5,353

Most-cited papers

UvA-DARE ( Digital Academic Repository ) Reading the maps : Organization and function of chromatin types in Drosophila Braunschweig
Guillaume J. Filion, J. V. van Bemmel, Ulrich Braunschweig, W. Talhout +5 more
2010855 citations
Semantic Scholar
Single-cell dynamics of genome-nuclear lamina interactions.
Jop Kind, Ludo Pagie, H. Ortabozkoyun, S. Boyle +6 more
2013Cell700 citations Open access
Semantic Scholar
Genome-wide maps of nuclear lamina interactions in single human cells
Jop Kind, Ludo Pagie, S. D. de Vries, L. Nahidiazar +13 more
2015Cell460 citations Open access
Semantic Scholar
Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence
W. Meuleman, Daan Peric-Hupkes, Jop Kind, Jean-Bernard Beaudry +5 more
2013Genome Research453 citations Open access
Semantic Scholar
Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila.
Sascha Mendjan, Mikko Taipale, Jop Kind, H. Holz +10 more
2006Molecules and Cells425 citations Open access
Semantic Scholar
Domains of genome-wide gene expression dysregulation in Down’s syndrome
A. Letourneau, F. Santoni, X. Bonilla, M. R. Sailani +24 more
2014Nature288 citations
Semantic Scholar
Genome-nuclear lamina interactions and gene regulation.
Jop Kind, B. van Steensel
2010Current Opinion in Cell Biology203 citations
Semantic Scholar
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
Guillaume J. Filion, J. V. van Bemmel, Ulrich Braunschweig, W. Talhout +7 more
2010Cell185 citations Open access
Semantic Scholar
Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila.
Jop Kind, Juan M. Vaquerizas, Philipp Gebhardt, M. Gentzel +3 more
2008Cell178 citations Open access
Semantic Scholar
The genomic landscape of the somatic linker histone subtypes H1.1 to H1.5 in human cells.
A. Izzo, Kinga Kamieniarz-Gdula, Fidel Ramírez, Nighat Noureen +4 more
2013Cell Reports131 citations Open access
Semantic Scholar
Genome-lamina interactions are established de novo in the early mouse embryo
M. Borsos, Sara M Perricone, Tamás Schauer, Julien Pontabry +5 more
2019Nature128 citations Open access
Semantic Scholar
The CD27 and CD70 costimulatory pathway inhibits effector function of T helper 17 cells and attenuates associated autoimmunity.
J. Coquet, S. Middendorp, G. V. D. van der Horst, Jop Kind +4 more
2013Immunity109 citations Open access
Semantic Scholar
Nuclear chromosome locations dictate segregation error frequencies
S. Klaasen, My Anh Truong, R. V. van Jaarsveld, I. Koprivec +14 more
2022Nature107 citations Open access
Semantic Scholar
Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms
M. Hodskinson, Alice Bolner, Koichi Sato, Ashley N. Kamimae-Lanning +10 more
2020Nature105 citations Open access
Semantic Scholar
scDam&T‐seq combines DNA adenine methyltransferase-based labeling of protein-DNA contact sites with transcriptome sequencing to analyze regulatory programs in single cells
Koos Rooijers, C. M. Markodimitraki, F. Rang, S. D. de Vries +5 more
2019Nature Biotechnology85 citations Open access
Semantic Scholar
MOF-regulated acetylation of MSL-3 in the Drosophila dosage compensation complex.
A. Buscaino, T. Köcher, Jop Kind, H. Holz +4 more
2003Molecules and Cells85 citations Open access
Semantic Scholar
Transcription-Coupled Methylation of Histone H3 at Lysine 36 Regulates Dosage Compensation by Enhancing Recruitment of the MSL Complex in Drosophila melanogaster
O. Bell, Thomas Conrad, Jop Kind, C. Wirbelauer +2 more
2008Molecular and Cellular Biology83 citations Open access
Semantic Scholar
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
J. Redolfi, Y. Zhan, Christian Valdes-Quezada, Mariya Kryzhanovska +10 more
2019Nature Structural & Molecular Biology82 citations Open access
Semantic Scholar
The MOF chromobarrel domain controls genome-wide H4K16 acetylation and spreading of the MSL complex.
Thomas Conrad, F. Cavalli, H. Holz, Erinc Hallacli +5 more
2012Developmental Cell71 citations Open access
Semantic Scholar
Lamina Associated Domains and Gene Regulation in Development and Cancer
S. Lochs, Samy Kefalopoulou, Jop Kind
2019Cells67 citations Open access
Semantic Scholar
Stochastic genome-nuclear lamina interactions
Jop Kind, B. van Steensel
2014The Nucleus65 citations Open access
Semantic Scholar
Cotranscriptional recruitment of the dosage compensation complex to X-linked target genes.
Jop Kind, A. Akhtar
2007Genes & Development64 citations Open access
Semantic Scholar
Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome
Juan M. Vaquerizas, Ritsuko Suyama, Jop Kind, K. Miura +2 more
2010PLoS Genetics60 citations Open access
Semantic Scholar
Single-cell profiling of transcriptome and histone modifications with EpiDamID
F. Rang, K. L. de Luca, S. D. de Vries, Christian Valdes-Quezada +7 more
2021bioRxiv51 citations Open access
Semantic Scholar
Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans
Rahul Sharma, D. Jost, Jop Kind, Georgina Gómez-Saldivar +4 more
2014Genes & Development48 citations Open access
Semantic Scholar
Spatial chromatin organization and gene regulation at the nuclear lamina
I. Guerreiro, Jop Kind
2019Current Opinion in Genetics and Development46 citations Open access
Semantic Scholar
A pendulum of induction between the epiblast and extra-embryonic endoderm supports post-implantation progression
E. Vrij, Yvonne Scholte Op Reimer, Laury Roa Fuentes, I. Guerreiro +7 more
2022Development32 citations Open access
Semantic Scholar
Simultaneous quantifications of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq
C. M. Markodimitraki, F. Rang, Koos Rooijers, S. D. de Vries +6 more
2020Nature Protocols28 citations Open access
Semantic Scholar
Self-organization of post-implantation-like embryonic tissues from blastoids
E. Vrij, Yvonne Scholte Op Reimer, Javier Frias Aldeguer, I. Guerreiro +4 more
2019bioRxiv23 citations Open access
Semantic Scholar
Combinatorial single-cell profiling of major chromatin types with MAbID
S. Lochs, Robin H. van der Weide, K. L. de Luca, T. Korthout +3 more
2023Nature Methods21 citations Open access
Semantic Scholar
Attach and stretch: Emerging roles for genome-lamina contacts in shaping the 3D genome.
Pim M. J. Rullens, Jop Kind
2020Current Opinion in Cell Biology21 citations Open access
Semantic Scholar
Antagonism between H3K27me3 and genome–lamina association drives atypical spatial genome organization in the totipotent embryo
I. Guerreiro, F. Rang, Yumiko K. Kawamura, Carla Kroon-Veenboer +7 more
2024Nature Genetics19 citations Open access
Semantic Scholar
Genome-wide profiling of DNA repair proteins in single cells
K. L. de Luca, Pim M. J. Rullens, Magdalena A. Karpińska, S. D. de Vries +6 more
2024Nature Communications16 citations Open access
Semantic Scholar
A hitchhiker's guide to single‐cell epigenomics: Methods and applications for cancer research
Marta Moreno-González, Isabel Sierra, Jop Kind
2024International Journal of Cancer11 citations Open access
Semantic Scholar
The role of heterochromatin in 3D genome organization during preimplantation development.
F. Rang, Jop Kind, I. Guerreiro
2023Cell Reports10 citations Open access
Semantic Scholar
Single-Cell DamID to Capture Contacts Between DNA and the Nuclear Lamina in Individual Mammalian Cells.
K. L. de Luca, Jop Kind
2021Methods in molecular biology8 citations Open access
Semantic Scholar
Single-cell proﬁling of transcriptome and histone modiﬁcations with EpiDamID
F. Rang, K. L. de Luca, S. D. de Vries, Christian Valdes-Quezada +9 more
7 citations
Semantic Scholar
Time-resolved and multifactorial profiling in single cells resolves the order of heterochromatin formation events during X-chromosome inactivation
Samy Kefalopoulou, Pim M. J. Rullens, K. L. de Luca, Sandra De Vries +4 more
2023bioRxiv5 citations Open access
Semantic Scholar
DamID to Map Genome-Protein Interactions in Preimplantation Mouse Embryos.
Mrinmoy Pal, Jop Kind, M. Torres-Padilla
2021Methods in molecular biology5 citations Open access
Semantic Scholar
Retrospective and multifactorial single-cell profiling reveals sequential chromatin reorganization during X inactivation
Samy Kefalopoulou, Pim M. J. Rullens, K. L. de Luca, S. D. de Vries +4 more
2025Nature Cell Biology4 citations Open access
Semantic Scholar
Modeling of DNA methylation in cis reveals principles of chromatin folding in vivo in the absence of crosslinking and ligation
J. Redolfi, Y. Zhan, Christian Valdes, Mariya Kryzhanovska +8 more
2018bioRxiv4 citations Open access
Semantic Scholar
Reconfiguration of genome-lamina interactions marks the commissioning of limb cell-fates
Konrad Chudzik, I. Guerreiro, Samy Kefalopoulou, Alex Abraham +8 more
2025bioRxiv3 citations
Semantic Scholar
H3K27me3 dictates atypical genome-nuclear lamina interactions and allelic asymmetry during early embryogenesis
I. Guerreiro, F. Rang, Yumiko K. Kawamura, Femke C. Groenveld +5 more
2023bioRxiv3 citations Open access
Semantic Scholar
MeCP2 binding and genome–lamina reorganization precede long gene activation during mouse corticogenesis
Pim M. J. Rullens, S. D. de Vries, S. Lochs, C. M. Markodimitraki +9 more
2025bioRxiv2 citations
Semantic Scholar
Genome-wide profiling of DNA repair proteins identifies higher-order coordination in single cells
K. L. de Luca, Pim M. J. Rullens, Magdalena A. Karpińska, S. D. de Vries +6 more
2024bioRxiv2 citations Open access
Semantic Scholar
Combinatorial single-cell profiling of all major chromatin types with MAbID
S. Lochs, Robin H. van der Weide, K. L. de Luca, T. Korthout +3 more
2023bioRxiv1 citations Open access
Semantic Scholar
Simultaneous Quantification of Spatial Genome Positioning and Transcriptomics in Single Cells with scDam&T-Seq.
S. Lochs, Jop Kind
2022Methods in molecular biology1 citations
Semantic Scholar
Corrigendum: Domains of genome-wide gene expression dysregulation in Down’s syndrome
A. Letourneau, F. Santoni, X. Bonilla, M. R. Sailani +24 more
2015Nature1 citations Open access
Semantic Scholar
conserved and associated with A / T-rich sequence genome interactions are highly − Constitutive nuclear lamina Material Supplemental
W. Meuleman, Daan Peric-Hupkes, Jop Kind, Jean-Bernard Beaudry +5 more
20131 citations
Semantic Scholar
Enzyme tethering for in situ epigenomics
K. Ahmad, Sandipan Brahma, D. Janssens, Jop Kind +5 more
2026Nature Reviews Methods Primers0 citations
Semantic Scholar

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