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Christopher S. Oehmen · SciRah

Researcher profile · Semantic Scholar

Christopher S. Oehmen

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Christopher S. Oehmen — researcher profile on SciRah

h-index: 15
Works: 60
Citations: 877

Most-cited papers

ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis
Christopher S. Oehmen, J. Nieplocha
2006IEEE Transactions on Parallel and Distributed Systems151 citations
Semantic Scholar
Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria
J. Mcdermott, A. Corrigan, Elena S. Peterson, Christopher S. Oehmen +6 more
2010Infection and Immunity114 citations Open access
Semantic Scholar
Exascale applications: skin in the game
Francis Alexander, A. Almgren, John Bell, A. Bhattacharjee +47 more
2020Philosophical Transactions of the Royal Society A105 citations Open access
Semantic Scholar
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics
B. Webb-Robertson, W. Cannon, Christopher S. Oehmen, Anuj R. Shah +3 more
2008Bioinform.89 citations Open access
Semantic Scholar
Inhibition of Dengue Virus Infections in Cell Cultures and in AG129 Mice by a Small Interfering RNA Targeting a Highly Conserved Sequence
D. A. Stein, Stuart T. Perry, M. Buck, Christopher S. Oehmen +9 more
2011Journal of Virology54 citations Open access
Semantic Scholar
SVM-HUSTLE - an iterative semi-supervised machine learning approach for pairwise protein remote homology detection
Anuj R. Shah, Christopher S. Oehmen, B. Webb-Robertson
2008Bioinform.54 citations Open access
Semantic Scholar
ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems
Christopher S. Oehmen, D. Baxter
2013Bioinform.38 citations Open access
Semantic Scholar
Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.
W. Cannon, K. Jarman, B. Webb-Robertson, D. Baxter +5 more
2005Journal of Proteome Research28 citations
Semantic Scholar
Physicochemical property distributions for accurate and rapid pairwise protein homology detection
B. Webb-Robertson, Kyle G. Ratuiste, Christopher S. Oehmen
2010BMC Bioinformatics27 citations Open access
Semantic Scholar
SVM-BALSA: Remote homology detection based on Bayesian sequence alignment
B. Webb-Robertson, Christopher S. Oehmen, M. Matzke
2005Comput. Biol. Chem.25 citations
Semantic Scholar
Biomolecular Computation in Virtual Test Tubes
M. Garzon, Christopher S. Oehmen
2001DNA23 citations
Semantic Scholar
Defending Our Public Biological Databases as a Global Critical Infrastructure
Jacob Caswell, J. Gans, N. Generous, Corey M. Hudson +9 more
2019Frontiers in Bioengineering and Biotechnology22 citations Open access
Semantic Scholar
A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.
J. Mcdermott, Christopher S. Oehmen, L. McCue, E. Hill +5 more
2011Molecular Biosystems21 citations
Semantic Scholar
Formal Approach for Resilient Reachability based on End-System Route Agility
Usman Rauf, F. Gillani, E. Al-Shaer, M. Halappanavar +2 more
2016MTD@CCS18 citations
Semantic Scholar
Proactive routing mutation against stealthy Distributed Denial of Service attacks: metrics, modeling, and analysis
Qi Duan, E. Al-Shaer, Samrat Chatterjee, M. Halappanavar +1 more
201815 citations
Semantic Scholar
An organic model for detecting cyber-events
Christopher S. Oehmen, Elena S. Peterson, S. Dowson
2010Cyber Security and Information Intelligence Research Workshop13 citations
Semantic Scholar
Evolutionary drift models for moving target defense
Christopher S. Oehmen, Elena S. Peterson, J. Teuton
2013Cyber Security and Information Intelligence Research Workshop7 citations
Semantic Scholar
Final Report for Bio-Inspired Approaches to Moving-Target Defense Strategies
Glenn A. Fink, Christopher S. Oehmen
20126 citations Open access
Semantic Scholar
Directional Bias and Pheromone for Discovery and Coverage on Networks
Glenn A. Fink, K. Berenhaut, Christopher S. Oehmen
20122012 IEEE Sixth International Conference on Self-Adaptive and Self-Organizing Systems6 citations
Semantic Scholar
A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
B. Webb-Robertson, Christopher S. Oehmen, Anuj R. Shah
2008Comput. Biol. Chem.6 citations
Semantic Scholar
Applying the scientific method to cybersecurity research
M. Tardiff, G. Bonheyo, Katherine A. Cort, Thomas W. Edgar +8 more
2016IEEE International Conference on Technologies for Homeland Security5 citations
Semantic Scholar
Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms
Anuj R. Shah, Christopher S. Oehmen, Jill Harper, B. Webb-Robertson
2007Comput. Biol. Chem.5 citations
Semantic Scholar
Proceedings of the 2017 Workshop on Automated Decision Making for Active Cyber Defense
E. Al-Shaer, Christopher S. Oehmen, M. Rahman
2015SafeConfig@CCS4 citations
Semantic Scholar
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics
B. Webb-Robertson, W. Cannon, Christopher S. Oehmen, Anuj R. Shah +3 more
2010Bioinform.4 citations Open access
Semantic Scholar
Position Papers for the ASCR Workshop on Cybersecurity and Privacy for Scientific Computing Ecosystems
S. Prowell, David O. Manz, Candace Culhane, S. Ghafoor +6 more
20213 citations Open access
Semantic Scholar
LINEBACkER: Bio-inspired data reduction toward real time network traffic analysis
J. Teuton, Elena S. Peterson, Doug Nordwall, B. Akyol +1 more
20132013 6th International Symposium on Resilient Control Systems (ISRCS)3 citations
Semantic Scholar
A generalized bio-inspired method for discovering sequence-based signatures
Elena S. Peterson, Darren S. Curtis, Aaron R. Phillips, J. Teuton +1 more
20132013 IEEE International Conference on Intelligence and Security Informatics3 citations
Semantic Scholar
An efficient machine learning approach to low-complexity filtering in biological sequences
Christopher A. Barber, Christopher S. Oehmen
2012IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology3 citations
Semantic Scholar
Applications in Data-Intensive Computing
Anuj R. Shah, J. Adkins, D. Baxter, W. Cannon +18 more
2010Advances in Computing3 citations
Semantic Scholar
An adaptive middleware framework for Scientific Computing at extreme scales
A. Gosney, Christopher S. Oehmen, A. Wynne, Justin Almquist
2010IEEE International Conference on Information Reuse and Integration3 citations
Semantic Scholar
PQuad - a visual analysis platform for proteomic data exploration of microbial organisms
B. Webb-Robertson, Elena S. Peterson, M. Singhal, Kyle R. Klicker +3 more
2007Bioinform.3 citations Open access
Semantic Scholar
Behavior-dependent Routing: Responding to Anomalies with Automated Low-cost Measures
Christopher S. Oehmen, T. E. Carroll, Patrick C. Paulson, Daniel M. Best +5 more
2015SafeConfig@CCS2 citations
Semantic Scholar
Novel Visual and Analytical Methods in Repurposing Legacy Scientific Code - A Case Study
Christopher S. Oehmen, Darren S. Curtis, Aaron R. Phillips, Elena S. Peterson
20132 citations
Semantic Scholar
An Adaptive Middleware Framework for Optimal Scheduling on Large Scale Compute Clusters
A. Gosney, John Miller, I. Gorton, Christopher S. Oehmen
20112011 Eighth International Conference on Information Technology: New Generations2 citations
Semantic Scholar
It Takes Glue to Tango: MeDICi integration framework creates data-intensive computing pipeline
I. Gorton, Christopher S. Oehmen, J. Mcdermott
20082 citations
Semantic Scholar
Bringing high-performance computing to the biologist's workbench: approaches, applications, and challenges
Christopher S. Oehmen, W. Cannon
20082 citations Open access
Semantic Scholar
LINEBACKER: LINE-Speed Bio-Inspired Analysis and Characterization for Event Recognition
Christopher S. Oehmen, P. Bruillard, Brett D. Matzke, Aaron R. Phillips +5 more
20162016 IEEE Security and Privacy Workshops (SPW)1 citations
Semantic Scholar
A Biosequence-Based Approach to Software Characterization
Christopher S. Oehmen, Elena S. Peterson, Aaron R. Phillips, Darren S. Curtis
20162016 IEEE Security and Privacy Workshops (SPW)1 citations
Semantic Scholar
SafeConfig'16: Testing and Evaluation for Active & Resilient Cyber Systems Panel Verification of Active and Resilient Systems: Practical or Utopian?
Nicholas J. Multari, A. Singhal, David O. Manz, Robert Cowles +3 more
2016SafeConfig@CCS1 citations
Semantic Scholar
Automated Decision Making for Active Cyber Defense: Panel Discussion
Christopher S. Oehmen, E. Al-Shaer, M. Rahman
2015SafeConfig@CCS1 citations
Semantic Scholar
SafeConfig 2015: Workshop on Automated Decision Making for Active Cyber Defense
E. Al-Shaer, Christopher S. Oehmen, M. Rahman
2015Conference on Computer and Communications Security1 citations
Semantic Scholar
Annotated Bibliography for the DEWPOINT project
Christopher S. Oehmen
20091 citations Open access
Semantic Scholar
A Secure Web Application Providing Public Access to High-Performance Data Intensive Scientific Resources - ScalaBLAST Web Application
Darren S. Curtis, Elena S. Peterson, Christopher S. Oehmen
2008International Conference on Web Information Systems and Technologies1 citations Open access
Semantic Scholar
Advanced Computing is at the Forefront of a New “Moonshot” Revolutionizing the North American Power Grid
Christopher S. Oehmen, S. Peleš, Katarzyna Świrydowicz, C. Petra +4 more
2024Computing in science & engineering (Print)0 citations Open access
Semantic Scholar
Bio-inspired approaches for security and resiliency of network traffic
Christopher S. Oehmen, Elena S. Peterson
2019Nature-Inspired Cyber Security and Resiliency: Fundamentals, Techniques and Applications0 citations
Semantic Scholar
Approche à base de bioséquence permettant d'analyser des binaires
Elena S. Peterson, Christopher S. Oehmen, A. R. Phillips, Darren S. Curtis
20160 citations
Semantic Scholar
Proceedings of the 2015 Workshop on Automated Decision Making for Active Cyber Defense
E. Al-Shaer, Christopher S. Oehmen, M. Rahman
2015SafeConfig@CCS0 citations
Semantic Scholar
Session details: Panel
Christopher S. Oehmen
20150 citations
Semantic Scholar
Annotated Bibliography for the MATADOR Project
T. Janik, A. White, N. Pawley, Kary L. Myers +1 more
20120 citations Open access
Semantic Scholar
Data-Intensive Computing: Binary Classification with Support Vector Machines
Patrick Nichols, B. Webb-Robertson, Christopher S. Oehmen
20120 citations
Semantic Scholar

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B. Webb-Robertson×11
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