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A. Tsirigos · SciRah

Researcher profile · Semantic Scholar

A. Tsirigos

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A. Tsirigos — researcher profile on SciRah

h-index: 66
Works: 323
Citations: 19K

Most-cited papers

Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
Jimin Tan, Nina Shenker-Tauris, Javier Rodriguez-Hernaez, Eric Wang +8 more
2023Nature Biotechnology105 citations Open access
Semantic Scholar
Metabolic coordination between skin epithelium and Type 17 immunity sustains chronic skin inflammation
Ipsita Subudhi, Piotr Konieczny, A. Prystupa, R. Castillo +13 more
2024Immunity104 citations Open access
Semantic Scholar
Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unannotated pathology slides
Adalberto Claudio Quiros, N. Coudray, A. Yeaton, Xinyu Yang +12 more
2024Nature Communications73 citations Open access
Semantic Scholar
Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion
E. Battistello, Kimberlee Hixon, Dawn E Comstock, Clayton K. Collings +15 more
2023Molecules and Cells67 citations Open access
Semantic Scholar
Glutamine antagonist DRP-104 suppresses tumor growth and enhances response to checkpoint blockade in KEAP1 mutant lung cancer
R. Pillai, Sarah E. Leboeuf, Yuan Hao, Connie New +24 more
2024Science Advances55 citations Open access
Semantic Scholar
The integrated stress response promotes immune evasion through lipocalin 2
Jozef P Bossowski, R. Pillai, J. Kilian, Angela Wong Lau +32 more
2026Nature16 citations Open access
Semantic Scholar
Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer
Bo-Jing Liu, M. Polack, N. Coudray, Adalberto Claudio Quiros +9 more
2025Nature Communications16 citations Open access
Semantic Scholar
3D chromatin hubs as regulatory units of identity and survival in human acute leukemia
Giovanni Gambi, Francesco Boccalatte, Javier Rodríguez Hernáez, Ziyan Lin +9 more
2024Molecules and Cells15 citations Open access
Semantic Scholar
The stress response regulator HSF1 modulates natural killer cell anti-tumour immunity
K. Hockemeyer, Theodore Sakellaropoulos, Xufeng Chen, Olha Ivashkiv +16 more
2024Nature Cell Biology15 citations
Semantic Scholar
An Anterior Second Heart Field Enhancer Regulates the Gene Regulatory Network of the Cardiac Outflow Tract
Naoko Yamaguchi, E. Chang, Ziyan Lin, Akshay Shekhar +7 more
2023Circulation13 citations Open access
Semantic Scholar
Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries
H. Ortabozkoyun, Pin-Yao Huang, Edgar Gonzalez-Buendia, Hyein S Cho +4 more
2024Molecules and Cells12 citations Open access
Semantic Scholar
Self supervised artificial intelligence predicts poor outcome from primary cutaneous squamous cell carcinoma at diagnosis
N. Coudray, Michelle C Juarez, Maressa C. Criscito, A. Quiros +21 more
2025npj Digital Medicine11 citations Open access
Semantic Scholar
Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation
Ioanna Tiniakou, Pei-Feng Hsu, L. Lopez-Zepeda, Görkem Garipler +16 more
2024Science immunology11 citations Open access
Semantic Scholar
Self-Supervised Learning Reveals Clinically Relevant Histomorphological Patterns for Therapeutic Strategies in Colon Cancer
Bo-Jing Liu, M. Polack, N. Coudray, A. Quiros +7 more
2024bioRxiv11 citations Open access
Semantic Scholar
Clonal evolution of the 3D chromatin landscape in patients with relapsed pediatric B-cell acute lymphoblastic leukemia
Sonali Narang, Yohana E. Ghebrechristos, Nikki A. Evensen, Nina Murrell +9 more
2024Nature Communications10 citations Open access
Semantic Scholar
Characterization of tumor heterogeneity through segmentation-free representation learning
Jimin Tan, Hortense Le, Jiehui Deng, Yingzhuo Liu +17 more
2025Nature Biomedical Engineering9 citations
Semantic Scholar
CNS-CLIP: Transforming a Neurosurgical Journal Into a Multimodal Medical Model
A. Alyakin, D. Kurland, Daniel A Alber, K. Sangwon +5 more
2024Neurosurgery9 citations
Semantic Scholar
MethNet: a robust approach to identify regulatory hubs and their distal targets from cancer data
Theodore Sakellaropoulos, Catherine Do, Guimei Jiang, Giulia Cova +6 more
2024Nature Communications9 citations Open access
Semantic Scholar
Artificial Intelligence Algorithm Predicts Response to Immune Checkpoint Inhibitors
Faisal Fa'ak, N. Coudray, G. Jour, Milad Ibrahim +9 more
2025Clinical Cancer Research8 citations
Semantic Scholar
A proinflammatory response and polarized differentiation of stromal elements characterizes the murine myeloma bone marrow niche
Hussein Ghamlouch, Dylan C Gagler, Patrick Blaney, Eileen M Boyle +8 more
2025Experimental Hematology & Oncology8 citations Open access
Semantic Scholar
Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation
Catherine Do, Guimei Jiang, Giulia Cova, Christos C. Katsifis +11 more
2024bioRxiv8 citations Open access
Semantic Scholar
Novel Chromatin Insulating Activities Uncovered upon Eliminating Known Insulators in vivo
H. Ortabozkoyun, Pin-Yao Huang, Hyun-Ah Cho, A. Tsirigos +2 more
20237 citations
Semantic Scholar
Universal receptive system as a novel regulator of transcriptomic activity of Staphylococcus aureus
G. Tetz, K. Kardava, M. Vecherkovskaya, A. Khodadadi-Jamayran +2 more
2025Microbial Cell Factories6 citations Open access
Semantic Scholar
A Phase I Dose-Escalation Clinical Trial of Bronchoscopic Cryoimmunotherapy in Advanced-Stage NSCLC
J. Tsay, Antonio Velez, D. Collazo, I. Laniado +24 more
2025JTO Clinical and Research Reports6 citations Open access
Semantic Scholar
Native stem cell transcriptional circuits define cardinal features of high-risk leukemia.
Qing Wang, Francesco Boccalatte, Jason Xu, Giovanni Gambi +24 more
2025Journal of Experimental Medicine6 citations
Semantic Scholar
Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation
Catherine Do, Guimei Jiang, Giulia Cova, Christos C. Katsifis +11 more
2025Cell Genomics6 citations Open access
Semantic Scholar
Lung microbial and host genomic signatures as predictors of prognosis in early-stage adenocarcinoma
J. Tsay, F. Darawshy, Chan Wang, B. Kwok +28 more
2024Cancer Epidemiology, Biomarkers and Prevention6 citations
Semantic Scholar
Digital Spatial Profiling to Predict Recurrence in Grade 3 Stage I Lung Adenocarcinoma.
Stephanie H. Chang, Valeria Mezzano-Robinson, Hua Zhou, André L. Moreira +6 more
2023Journal of Thoracic and Cardiovascular Surgery6 citations
Semantic Scholar
Clonal Heterogeneity in Human Pancreatic Ductal Adenocarcinoma and Its Impact on Tumor Progression
D. Kalfakakou, Daniel C. Cameron, Emily A. Kawaler, Motoyuki Tsuda +22 more
2025bioRxiv5 citations
Semantic Scholar
The Universal Receptive System: A Novel Regulator of Antimicrobial and Anticancer Compound Production by White Blood Cells.
V. Tetz, K. Kardava, M. Vecherkovskaya, A. Khodadadi-Jamayran +2 more
2025Journal of Leukocyte Biology4 citations Open access
Semantic Scholar
Quantitative and Morphology-Based Deep Convolutional Neural Network Approaches for Osteosarcoma Survival Prediction in the Neoadjuvant and Metastatic Setting.
N. Coudray, Michael A. Occidental, J. Mantilla, Adalberto Claudio Quiros +4 more
2024Clinical Cancer Research4 citations Open access
Semantic Scholar
Tumor-intrinsic LKB1-LIF signaling axis establishes a myeloid niche to promote immune evasion and tumor growth
A. Rashidfarrokhi, R. Pillai, Yuan Hao, Warren L. Wu +30 more
2023bioRxiv4 citations Open access
Semantic Scholar
Detection of gene fusions and rearrangements in FFPE solid tumor specimens using Hi-C.
Kristyn Galbraith, Jamin Wu, Kristin Sikkink, Hussein Mohamed +16 more
2025Journal of Molecular Diagnostics3 citations Open access
Semantic Scholar
Hi-C for genome-wide detection of enhancer-hijacking rearrangements in routine lymphoid cancer biopsies
Jamin Wu, Shih-Chun A. Chu, Cho Jang, Misha Movahed-Ezazi +20 more
2025bioRxiv3 citations Open access
Semantic Scholar
The Polygenic Architecture of Human Diseases Affecting the Hair Follicle
Anna L. Brinks, C. Needle, O. Perez, Jerry Shapiro +4 more
2025Journal of Investigative Dermatology3 citations Open access
Semantic Scholar
Brain and cancer associated binding domain mutations provide insight into CTCF’s relationship with chromatin and its ability to act as a chromatin organizer
Catherine Do, Guimei Jiang, Giulia Cova, Christos C. Katsifis +13 more
2024Research Square3 citations
Semantic Scholar
Previously unknown regulatory role of extracellular RNA on bacterial directional migration
V. Tetz, K. Kardava, M. Vecherkovskaya, A. Khodadadi-Jamayran +2 more
2024bioRxiv3 citations Open access
Semantic Scholar
Splenic extramedullary hematopoiesis in myelofibrosis is shaped by transcriptomic and epigenetic dysregulation.
Rebecca Austin, Madeline H. Kowalski, Xiao-Li Wang, Ziyan Lin +22 more
2026Cell Stem Cell2 citations
Semantic Scholar
Vision-Language Models for Image-Based Dietary Assessment: A Benchmark of Accuracy, Cost, and Prompt Strategies Across Ten Models
Sam Sterling, Lauren T. Berube, Andrea J. Glenn, A. Shaukat +3 more
2026bioRxiv2 citations Open access
Semantic Scholar
Inflammatory immune modulators of AML lung infiltration and respiratory failure
Varvara Paraskevopoulou, Ziyan Lin, M. Casado-Peláez, D. Grases +22 more
2026Nature Immunology2 citations
Semantic Scholar
RAS pathway activation and microenvironmental adaptation as hallmarks of myeloid sarcoma.
Bettina Nadorp, Audrey Lasry, S. Loghavi, Ravi Patel +30 more
2026Blood Cancer Discovery2 citations
Semantic Scholar
Multimodal learning decodes the global binding landscape of chromatin-associated proteins
Ji-Min Tan, Xi Fu, Xin-Yu Ling, Shentong Mo +6 more
2025bioRxiv2 citations Open access
Semantic Scholar
Regulating white blood cell activity through the novel Universal Receptive System
V. Tetz, K. Kardava, M. Vecherkovskaya, A. Khodadadi-Jamayran +2 more
2025bioRxiv2 citations
Semantic Scholar
A Comprehensive Review of Genome-Wide Association Studies of Human Hair Traits
C. Needle, Anna L. Brinks, O. Perez, Jerry Shapiro +3 more
2025Journal of Investigative Dermatology2 citations Open access
Semantic Scholar
AI accurately identifies targetable alterations in lung cancer histological images
Hortense Le, A. Tsirigos
2025Nature Reviews Clinical Oncology2 citations
Semantic Scholar
A developmentally regulated long-range enhancer-promoter contact mediates human neural development
Devin Bready, Shuai Wang, Niklas Ravn-Boess, J. Frenster +18 more
2025bioRxiv2 citations Open access
Semantic Scholar
MetFinder: a tool for automated quantitation of metastatic burden in histological sections from preclinical models
Alcida Karz, N. Coudray, Erol Bayraktar, Kristyn Galbraith +16 more
2024Pigment Cell & Melanoma Research2 citations Open access
Semantic Scholar
The Universal Receptive System acts as a novel regulator in the production of antimicrobial and anticancer bioactive compounds by white blood cells
V. Tetz, K. Kardava, M. Vecherkovskaya, A. Khodadadi-Jamayran +2 more
2024bioRxiv2 citations
Semantic Scholar
Epigenetic reactivation of a tumor suppressor program in AML
Alexander Arnuk, Cui-Juan Han, Abimbo Lawal, Bo-Fei Wang +18 more
2026Science Translational Medicine1 citations
Semantic Scholar
Comprehensive benchmarking of somatic mutation detection by the SMaHT Network.
A. Abyzov, Abhiram Natu, Adam Voshall, Adriana E. Sedeño-Cortés +338 more
2026Cell1 citations Open access
Semantic Scholar

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