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Amin Allahyar · SciRah

Researcher profile · Semantic Scholar

Amin Allahyar

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Amin Allahyar — researcher profile on SciRah

h-index: 9
Works: 30
Citations: 511

Most-cited papers

Enhancer hubs and loop collisions identified from single-allele topologies
Amin Allahyar, C. Vermeulen, B. A. Bouwman, Peter H. L. Krijger +14 more
2018Nature Genetics216 citations Open access
Semantic Scholar
Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression.
Erica S. M. Vos, Christian Valdes-Quezada, Yike Huang, Amin Allahyar +6 more
2021Molecules and Cells51 citations Open access
Semantic Scholar
FERAL: network-based classifier with application to breast cancer outcome prediction
Amin Allahyar, J. de Ridder
2015Bioinform.48 citations Open access
Semantic Scholar
Fast Feature Reduction in intrusion detection datasets
Shafigh Parsazad, Ehsan Saboori, Amin Allahyar
20122012 Proceedings of the 35th International Convention MIPRO41 citations
Semantic Scholar
Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing
Amin Allahyar, Mark Pieterse, J. Swennenhuis, G. T. L. Vries +25 more
2021Nature Communications32 citations Open access
Semantic Scholar
Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies
C. Vermeulen, Amin Allahyar, B. A. Bouwman, Peter H. L. Krijger +8 more
2020Nature Protocols30 citations Open access
Semantic Scholar
Long-range enhancer-controlled genes are hypersensitive to regulatory factor perturbations
Sjoerd J. D. Tjalsma, Niels J. Rinzema, Marjon J. A. M. Verstegen, Michelle J. Robers +6 more
2025Cell Genomics27 citations Open access
Semantic Scholar
A data-driven interactome of synergistic genes improves network-based cancer outcome prediction
Amin Allahyar, J. Ubels, J. de Ridder
2018bioRxiv16 citations Open access
Semantic Scholar
Constrained Semi-Supervised Growing Self-Organizing Map
Amin Allahyar, H. Yazdi, A. Harati
2015Neurocomputing10 citations
Semantic Scholar
Gamma-Retrovirus Integration Marks Cell Type-Specific Cancer Genes: A Novel Profiling Tool in Cancer Genomics
K. Gilroy, A. Terry, Asif Naseer, J. de Ridder +8 more
2016PLoS ONE9 citations Open access
Semantic Scholar
Characterization of induced cohesin loop extrusion trajectories in living cells
Rui-Qi Han, Yike Huang, Michelle J. Robers, Mikhail Magnitov +7 more
2025Nature Genetics8 citations Open access
Semantic Scholar
Data Selection for Semi-Supervised Learning
Shafigh Parsazad, Ehsan Saboori, Amin Allahyar
2012arXiv.org6 citations
Semantic Scholar
FFPE-TLC: an NGS technology for accurate DNA-based gene fusion detection in bone and soft tissue tumors.
E. Stelloo, R. Meijers, J. Swennenhuis, Amin Allahyar +12 more
2023Journal of Molecular Diagnostics4 citations Open access
Semantic Scholar
Detailed in vivo characterization of the players and impact of individual loop extrusion trajectories
Rui-Qi Han, Yike Huang, Michelle J. Robers, Mikhail D. Magnitov +7 more
2024bioRxiv3 citations Open access
Semantic Scholar
Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies
Amin Allahyar, C. Vermeulen, B. A. Bouwman, Peter H. L. Krijger +13 more
2017bioRxiv3 citations Open access
Semantic Scholar
Online discriminative component analysis feature extraction from stream data with domain knowledge
Amin Allahyar, H. Yazdi
2014Intelligent Data Analysis3 citations
Semantic Scholar
Data Ranking in Semi-Supervised Learning
Amin Allahyar, H. Yazdi
20132 citations
Semantic Scholar
MC4C: Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies
Amin Allahyar, C. Vermeulen, J. de Ridder, W. de Laat
20181 citations
Semantic Scholar
A lentiviral vector‐based insertional mutagenesis screen identifies mechanisms of resistance to MAPK inhibitors in melanoma
M. Ranzani, C. Alifrangis, Nicola A. Thompson, A. Rust +8 more
2018Pigment Cell & Melanoma Research1 citations
Semantic Scholar
MC-4C pipeline: test data
Amin Allahyar
20190 citations
Semantic Scholar
Multi-Contact 4C (MC-4C): long molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies v1
C. Vermeulen, Amin Allahyar, B. A. Bouwman, Peter H. L. Krijger +8 more
2019protocols.io0 citations Open access
Semantic Scholar
MC-4C: processing pipeline
Amin Allahyar
20190 citations
Semantic Scholar
Molecular interactomes: Network-guided cancer prognosis prediction a multi-way chromatin interaction analysis
Amin Allahyar, Doi
20180 citations
Semantic Scholar
Inferring disease specific interaction networks
Amin Allahyar, J. de Ridder
20160 citations Open access
Semantic Scholar
FERAL : Yet Another Network Based Breast Cancer Outcome Predictor
Amin Allahyar
20150 citations
Semantic Scholar
Artificial Immune Linear Discriminant Analysis
Amin Allahyar, H. Yazdi
20130 citations
Semantic Scholar
Incremental Constrained Discriminant Component Analysis
Amin Allahyar, H. Yazdi
20130 citations
Semantic Scholar
Initial Free Self-Organizing Map by Aggregation
Amin Allahyar, H. Yazdi
20130 citations
Semantic Scholar
Ranking in Semi-Supervised Learning
Amin Allahyar, H. Yazdi
20130 citations
Semantic Scholar
Step Function Approximation for Support Vector Reduction
Amin Allahyar, H. Yazdi
20130 citations
Semantic Scholar

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