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J. Carrington · SciRah

Researcher profile · Semantic Scholar

J. Carrington

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J. Carrington — researcher profile on SciRah

h-index: 94
Works: 173
Citations: 46K

Most-cited papers

microRNA-directed phasing during trans-acting siRNA biogenesis in plants.
Edwards Allen, Zhixin Xie, Adam M. Gustafson, J. Carrington
2005Cell2,243 citations Open access
Semantic Scholar
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
B. Haas, S. Kamoun, M. Zody, Rays H. Y. Jiang +92 more
2009Nature1,469 citations Open access
Semantic Scholar
Criteria for Annotation of Plant MicroRNAs
B. Meyers, M. Axtell, B. Bartel, David P. Bartel +17 more
2008The Plant Cell Online1,204 citations Open access
Semantic Scholar
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
N. Fahlgren, M. Howell, K. Kasschau, E. Chapman +7 more
2007PLoS ONE1,203 citations Open access
Semantic Scholar
In Brief
S. Giovannoni, H. Tripp, S. Givan, M. Podar +10 more
2005Nature reviews genetics1,157 citations
Semantic Scholar
Hierarchical Action and Inhibition of Plant Dicer-Like Proteins in Antiviral Defense
A. Déléris, Javier Gallego-Bartolomé, J. Bao, K. Kasschau +2 more
2006Science944 citations Open access
Semantic Scholar
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu, P. Pattyn, E. Bakker, Jun Cao +26 more
2011Nature Genetics883 citations Open access
Semantic Scholar
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation.
Taiowa A. Montgomery, M. Howell, J. Cuperus, Dawei Li +6 more
2008Cell769 citations Open access
Semantic Scholar
Evolution and Functional Diversification of MIRNA Genes
J. Cuperus, N. Fahlgren, J. Carrington
2011The Plant Cell736 citations Open access
Semantic Scholar
Specialization and evolution of endogenous small RNA pathways
E. Chapman, J. Carrington
2007Nature reviews genetics715 citations
Semantic Scholar
PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.
Pedro J. Batista, J. Ruby, Julie M. Claycomb, Rosaria Chiang +12 more
2008Molecules and Cells612 citations Open access
Semantic Scholar
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages.
Po-Pu Liu, Taiowa A. Montgomery, N. Fahlgren, K. Kasschau +2 more
2007The Plant Journal605 citations Open access
Semantic Scholar
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis.
N. Fahlgren, Taiowa A. Montgomery, M. Howell, Edwards Allen +3 more
2006Current Biology602 citations Open access
Semantic Scholar
Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
K. Kasschau, N. Fahlgren, E. Chapman, C. Sullivan +3 more
2007PLoS Biology554 citations Open access
Semantic Scholar
Distinct Argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline
Wei-Feng Gu, M. Shirayama, D. Conte, Jessica J. Vasale +15 more
2009Molecules and Cells526 citations Open access
Semantic Scholar
Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors
L. Lakatos, Tibor Csorba, V. Pantaleo, E. Chapman +6 more
2006EMBO Journal525 citations Open access
Semantic Scholar
Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection[W][OA]
H. García-Ruíz, A. Takeda, E. Chapman, C. Sullivan +3 more
2010The Plant Cell508 citations Open access
Semantic Scholar
Unique Functionality of 22 nt miRNAs in Triggering RDR6-Dependent siRNA Biogenesis from Target Transcripts in Arabidopsis
J. Cuperus, Alberto Carbonell, N. Fahlgren, H. García-Ruíz +6 more
2010Nature Structural &Molecular Biology434 citations Open access
Semantic Scholar
Pattern formation via small RNA mobility.
D. Chitwood, F. Nogueira, M. Howell, Taiowa A. Montgomery +2 more
2009Genes & Development394 citations Open access
Semantic Scholar
Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells
P. Dunoyer, Grégory Schott, Christophe Himber, D. Meyer +3 more
2010Science364 citations
Semantic Scholar
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.
J. Palatnik, H. Wollmann, C. Schommer, R. Schwab +8 more
2007Developmental Cell336 citations Open access
Semantic Scholar
Expression of Arabidopsis MIRNA Genes1[w]
Zhixin Xie, Edwards Allen, N. Fahlgren, Adam Calamar +2 more
2005Plant Physiology328 citations Open access
Semantic Scholar
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
M. Ha, Jie Lu, L. Tian, Vanitharani Ramachandran +6 more
2009Proceedings of the National Academy of Sciences of the United States of America324 citations Open access
Semantic Scholar
Formation of Complexes at Plasmodesmata for Potyvirus Intercellular Movement Is Mediated by the Viral Protein P3N-PIPO
T. Wei, Changwei Zhang, Jian Hong, Ru-Yi Xiong +4 more
2010PLoS Pathogens303 citations Open access
Semantic Scholar
Simultaneous CRISPR/Cas9‐mediated editing of cassava eIF4E isoforms nCBP‐1 and nCBP‐2 reduces cassava brown streak disease symptom severity and incidence
Michael A. Gomez, Zuh-Jyh Daniel Lin, Theodore Moll, R. Chauhan +7 more
2018Plant Biotechnology Journal281 citations Open access
Semantic Scholar
Antiviral Roles of Plant ARGONAUTES
Alberto Carbonell, J. Carrington
2015Current opinion in plant biology261 citations Open access
Semantic Scholar
Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting[W][OA]
M. Howell, N. Fahlgren, E. Chapman, Jason S. Cumbie +4 more
2007The Plant Cell Online261 citations Open access
Semantic Scholar
MicroRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana[W][OA]
N. Fahlgren, S. Jogdeo, K. Kasschau, C. Sullivan +7 more
2010The Plant Cell259 citations Open access
Semantic Scholar
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria.
N. Fahlgren, Maximilian J. Feldman, Malia A. Gehan, Melinda S. Wilson +13 more
2015Molecular Plant255 citations Open access
Semantic Scholar
miRNA Target Prediction in Plants.
N. Fahlgren, J. Carrington
2010Methods in molecular biology254 citations
Semantic Scholar
Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis
Hanna Lee, Seong Jeon Yoo, Jeong Hwan Lee, Wanhui Kim +4 more
2010Nucleic Acids Research243 citations Open access
Semantic Scholar
Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants[W][OA]
Alberto Carbonell, N. Fahlgren, H. García-Ruíz, K. Gilbert +4 more
2012The Plant Cell241 citations Open access
Semantic Scholar
Transcription Factors in Light and Circadian Clock Signaling Networks Revealed by Genomewide Mapping of Direct Targets for Neurospora White Collar Complex
Kristina M. Smith, Gencer Sancar, Rigzin Dekhang, C. Sullivan +12 more
2010Eukaryotic Cell216 citations Open access
Semantic Scholar
Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting
M. Howell, N. Fahlgren, E. Chapman, Jason S. Cumbie +4 more
2007213 citations
Semantic Scholar
Inaugural Article: AGO1-miR173 complex initiates phased siRNA formation in plants
Taiowa A. Montgomery, Seong Jeon Yoo, N. Fahlgren, S. Gilbert +7 more
2008194 citations Open access
Semantic Scholar
Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection
H. García-Ruíz, Alberto Carbonell, J. S. Hoyer, N. Fahlgren +8 more
2015PLoS Pathogens183 citations Open access
Semantic Scholar
Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes
K. Gilbert, Emily E. Holcomb, Robyn L Allscheid, J. Carrington
2019PLoS ONE176 citations Open access
Semantic Scholar
Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon.
M. Chiba, J. C. Reed, Alexey I. Prokhnevsky, E. Chapman +4 more
2006Virology151 citations Open access
Semantic Scholar
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
J. Cuperus, Taiowa A. Montgomery, N. Fahlgren, Russell T. Burke +3 more
2009Proceedings of the National Academy of Sciences of the United States of America150 citations Open access
Semantic Scholar
CG gene body DNA methylation changes and evolution of duplicated genes in cassava
Haifeng Wang, G. Beyene, J. Zhai, Su-Hua Feng +6 more
2015Proceedings of the National Academy of Sciences of the United States of America143 citations Open access
Semantic Scholar
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
Chi Zhang, Taiowa A. Montgomery, Harrison W. Gabel, Sylvia E. J. Fischer +5 more
2011Proceedings of the National Academy of Sciences of the United States of America142 citations Open access
Semantic Scholar
New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis1[W][OPEN]
Alberto Carbonell, A. Takeda, N. Fahlgren, Simon C. Johnson +2 more
2014Plant Physiology136 citations Open access
Semantic Scholar
Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis
Bin Yu, E. Chapman, Zhiyong Yang, J. Carrington +1 more
2006FEBS Letters134 citations Open access
Semantic Scholar
Computational and analytical framework for small RNA profiling by high-throughput sequencing.
N. Fahlgren, C. Sullivan, K. Kasschau, E. Chapman +7 more
2009RNA: A publication of the RNA Society132 citations Open access
Semantic Scholar
Regulation and functional specialization of small RNA-target nodes during plant development.
I. Rubio-Somoza, J. Cuperus, D. Weigel, J. Carrington
2009Current opinion in plant biology116 citations
Semantic Scholar
RTM3, Which Controls Long-Distance Movement of Potyviruses, Is a Member of a New Plant Gene Family Encoding a Meprin and TRAF Homology Domain-Containing Protein1[W][OA]
P. Cosson, L. Sofer, Quang Hien Le, V. Léger +8 more
2010Plant Physiology105 citations Open access
Semantic Scholar
Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis1[C][W]
S. R. Henz, Jason S. Cumbie, K. Kasschau, J. Lohmann +3 more
2007Plant Physiology105 citations Open access
Semantic Scholar
Specific Argonautes Selectively Bind Small RNAs Derived from Potato Spindle Tuber Viroid and Attenuate Viroid Accumulation In Vivo
S. Minoia, Alberto Carbonell, F. di Serio, A. Gisel +3 more
2014Journal of Virology103 citations Open access
Semantic Scholar
Genome-wide profiling of Populus small RNAs
D. Klevebring, N. Street, N. Fahlgren, K. Kasschau +3 more
2009BMC Genomics101 citations Open access
Semantic Scholar
Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum
S. Campo, K. Gilbert, J. Carrington
2015PLoS Pathogens96 citations Open access
Semantic Scholar

Frequent co-authors

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N. Fahlgren×26
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N. Fahlgren — researcher profile on SciRah
K. Kasschau×14
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K. Kasschau — researcher profile on SciRah
E. Chapman×13
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C. Sullivan×12
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C. Sullivan — researcher profile on SciRah

Taiowa A. Montgomery

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M. Howell — researcher profile on SciRah

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J. Cuperus — researcher profile on SciRah

Edwards Allen×6

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Edwards Allen — researcher profile on SciRah

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Jason S. Cumbie×6

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Jason S. Cumbie — researcher profile on SciRah

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Alberto Carbonell — researcher profile on SciRah