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Xiangda Peng · SciRah

Researcher profile · Semantic Scholar

Xiangda Peng

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Xiangda Peng — researcher profile on SciRah

h-index: 10
Works: 21
Citations: 274

Most-cited papers

Structural insight into precursor tRNA processing by yeast ribonuclease P
P. Lan, M. Tan, Yuebin Zhang, S. Niu +10 more
2018Science81 citations
Semantic Scholar
Accurate Evaluation of Ion Conductivity of the Gramicidin A Channel Using a Polarizable Force Field without Any Corrections.
Xiangda Peng, Yuebin Zhang, Huiying Chu, Yan Li +3 more
2016Journal of Chemical Theory and Computation40 citations Open access
Semantic Scholar
Integrating Multiple Accelerated Molecular Dynamics To Improve Accuracy of Free Energy Calculations.
Xiangda Peng, Yuebin Zhang, Yan Li, Qing-Long Liu +3 more
2018Journal of Chemical Theory and Computation28 citations
Semantic Scholar
Computational discovery and experimental verification of tyrosine kinase inhibitor pazopanib for the reversal of memory and cognitive deficits in rat model neurodegeneration
Yong-Liang Yang, Guohui Li, Dongyu Zhao, Haoyang Yu +9 more
2015Chemical Science24 citations Open access
Semantic Scholar
Prediction and Validation of a Protein’s Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence
Xiangda Peng, Michael C. Baxa, N. Faruk, J. Sachleben +7 more
2021Journal of Chemical Theory and Computation19 citations Open access
Semantic Scholar
Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein
Kristen A. Gaffney, Ruiqiong Guo, M. Bridges, Shaima MuhammedNazaar +12 more
2021Proceedings of the National Academy of Sciences of the United States of America18 citations Open access
Semantic Scholar
Free energy simulations with the AMOEBA polarizable force field and metadynamics on GPU platform
Xiangda Peng, Yuebin Zhang, Huiying Chu, Guohui Li
2016Journal of Computational Chemistry14 citations
Semantic Scholar
Polarizable atomic multipole-based force field for DOPC and POPE membrane lipids
Huiying Chu, Xiangda Peng, Yan Li, Yuebin Zhang +2 more
201811 citations Open access
Semantic Scholar
Polarizable force field development for lipids and their efficient applications in membrane proteins
Huiying Chu, Liaoran Cao, Xiangda Peng, Guohui Li
201711 citations
Semantic Scholar
A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids
Huiying Chu, Xiangda Peng, Yan Li, Yuebin Zhang +1 more
2017Molecules10 citations Open access
Semantic Scholar
Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes.
N. Faruk, Xiangda Peng, K. Freed, Benoı T. Roux +1 more
2022Journal of Chemical Theory and Computation6 citations
Semantic Scholar
Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation
N. Faruk, Xiangda Peng, T. Sosnick
2023International Journal of Molecular Sciences4 citations Open access
Semantic Scholar
Quality of force fields and sampling methods in simulating pepX peptides: a case study for intrinsically disordered proteins.
Anhui Wang, Xiangda Peng, Yan Li, Ding-Lin Zhang +2 more
2021Physical Chemistry, Chemical Physics - PCCP4 citations
Semantic Scholar
Cholesterol modulating the orientation of His17 in hepatitis C virus p7 (5a) viroporin – A molecular dynamic simulation study
Yuebin Zhang, Xiangda Peng, H. Ren, Huiying Chu +2 more
20174 citations
Semantic Scholar
The factors that determine the force needed to unfold a membrane protein in silico depend on the pulling direction.
N. Faruk, Xiangda Peng, T. Sosnick
2023Biophysical Journal0 citations Open access
Semantic Scholar
Coarse-grained RNA simulations with concerted c2'/c3'-endo sugar pucker transitions.
Yiheng Wu, Riccardo Alessandri, Aria E. Coraor, Xiangda Peng +2 more
2023Biophysical Journal0 citations Open access
Semantic Scholar
Conformational diversity and contraction of the denatured state ensemble of a helical membrane protein
T. Sosnick, Kristen A. Gaffney, Ruiqiong Guo, M. Bridges +11 more
2022Biophysical Journal0 citations Open access
Semantic Scholar
The downside and upside of including backbone flexibility for predicting protein and antibody binding
N. Faruk, Xiangda Peng, B. Roux, T. Sosnick
2022Biophysical Journal0 citations Open access
Semantic Scholar
Prediction of a Protein‘s Free Energy Surface and Validation with Hd Exchange
Xiangda Peng, N. Faruk, Michael C. Baxa, Scott Houliston +4 more
20210 citations Open access
Semantic Scholar
Upside: Protein Folding in CPU-Hours with Applications to Force-Unfolding of Membrane Proteins
T. Sosnick, J. Jumper, Zong-An Wang, Xiangda Peng +2 more
20200 citations Open access
Semantic Scholar
Coming Soon, Volume 37, Issue 5
M. Gordon, Xiangda Peng, Yuebin Zhang, Huiying Chu +1 more
20160 citations Open access
Semantic Scholar

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Guohui Li×11
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Guohui Li — researcher profile on SciRah
T. Sosnick×10
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T. Sosnick — researcher profile on SciRah
N. Faruk×9
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N. Faruk — researcher profile on SciRah
Yuebin Zhang×8
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Huiying Chu — researcher profile on SciRah

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