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L. Kaplinski · SciRah

Researcher profile · Semantic Scholar

L. Kaplinski

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L. Kaplinski — researcher profile on SciRah

h-index: 15
Works: 37
Citations: 1,089

Most-cited papers

Primer3_masker: integrating masking of template sequence with primer design software
T. Kõressaar, M. Lepamets, L. Kaplinski, Kairi Raime +2 more
2018Bioinform.489 citations Open access
Semantic Scholar
Label-free, multiplexed detection of bacterial tmRNA using silicon photonic microring resonators
O. Scheler, J. T. Kindt, A. Qavi, L. Kaplinski +4 more
2012Biosensors & bioelectronics71 citations Open access
Semantic Scholar
The application of oligonucleotide hybridization model for PCR and microarray optimization
L. Kaplinski
201358 citations
Semantic Scholar
StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees
Märt Roosaare, Mihkel Vaher, L. Kaplinski, M. Möls +6 more
2017PeerJ51 citations Open access
Semantic Scholar
GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists
L. Kaplinski, M. Lepamets, M. Remm
2015GigaScience46 citations Open access
Semantic Scholar
GENOMEMASKER package for designing unique genomic PCR primers
R. Andreson, Eric Reppo, L. Kaplinski, M. Remm
2006BMC Bioinformatics46 citations Open access
Semantic Scholar
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
Fanny-Dhelia Pajuste, L. Kaplinski, M. Möls, T. Puurand +2 more
2016Scientific Reports42 citations Open access
Semantic Scholar
MultiPLX: automatic grouping and evaluation of PCR primers.
L. Kaplinski, M. Remm
2015Methods in molecular biology37 citations
Semantic Scholar
ConoDictor: a tool for prediction of conopeptide superfamilies
Dominique Koua, Age Brauer, Silja Laht, L. Kaplinski +4 more
2012Nucleic Acids Res.36 citations Open access
Semantic Scholar
MultiPLX: automatic grouping and evaluation of PCR primers
L. Kaplinski, R. Andreson, T. Puurand, M. Remm
2005Bioinform.36 citations
Semantic Scholar
Identification and classification of conopeptides using profile Hidden Markov Models.
Silja Laht, Dominique Koua, L. Kaplinski, F. Lisacek +2 more
2012Biochimica et Biophysica Acta25 citations
Semantic Scholar
A novel hypothesis for histone-to-protamine transition in Bos taurus spermatozoa
Gerly Sillaste, L. Kaplinski, Riho Meier, Ü. Jaakma +2 more
2016Reproduction24 citations Open access
Semantic Scholar
NIPTmer: rapid k-mer-based software package for detection of fetal aneuploidies
Martin Sauk, O. Žilina, A. Kurg, Eva-Liina Ustav +10 more
2018Scientific Reports17 citations Open access
Semantic Scholar
Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies.
Dominique Koua, Silja Laht, L. Kaplinski, R. Stöcklin +3 more
2013Biochimica et Biophysica Acta17 citations
Semantic Scholar
Gene content of the fish-hunting cone snail Conus consors
R. Andreson, Märt Roosaare, L. Kaplinski, Silja Laht +5 more
2019bioRxiv15 citations Open access
Semantic Scholar
Creating basis for introducing non‐invasive prenatal testing in the Estonian public health setting
O. Žilina, K. Rekker, L. Kaplinski, Martin Sauk +11 more
2019Prenatal Diagnosis13 citations
Semantic Scholar
Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes
O. Scheler, L. Kaplinski, B. Glynn, P. Palta +6 more
2011BMC Biotechnology12 citations Open access
Semantic Scholar
Detection of tmRNA molecules on microarrays at low temperatures using helper oligonucleotides
L. Kaplinski, O. Scheler, S. Parkel, P. Palta +3 more
2010BMC Biotechnology11 citations Open access
Semantic Scholar
Fluorescent labeling of NASBA amplified tmRNA molecules for microarray applications
O. Scheler, B. Glynn, S. Parkel, P. Palta +5 more
2009BMC Biotechnology11 citations Open access
Semantic Scholar
Haplotype Phasing and Inheritance of Copy Number Variants in Nuclear Families
P. Palta, L. Kaplinski, L. Nagirnaja, A. Veidenberg +6 more
2015PLoS ONE9 citations Open access
Semantic Scholar
StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees
Märt Roosaare, Mihkel Vaher, L. Kaplinski, M. Möls +6 more
2016bioRxiv5 citations Open access
Semantic Scholar
KATK: fast genotyping of rare variants directly from unmapped sequencing reads
L. Kaplinski, M. Möls, T. Puurand, Fanny-Dhelia Pajuste +1 more
2020bioRxiv4 citations Open access
Semantic Scholar
MultiPLX: automatic grouping and evaluation of PCR primers.
L. Kaplinski, M. Remm
2007Methods in molecular biology3 citations
Semantic Scholar
Fast masking of repeated primer binding sites in eukaryotic genomes.
R. Andreson, L. Kaplinski, M. Remm
2007Methods in molecular biology3 citations
Semantic Scholar
DOCEST—fast and accurate estimator of human NGS sequencing depth and error rate
L. Kaplinski, M. Möls, T. Puurand, M. Remm
2023Bioinformatics Advances2 citations Open access
Semantic Scholar
Meta-Semantic Moral Encroachment: Some Experimental Evidence
A. Davies, L. Kaplinski, M. Lepamets
2019Studia Philosophica Estonica2 citations Open access
Semantic Scholar
Creating basis for introducing NIPT in the Estonian public health setting
O. Žilina, K. Rekker, L. Kaplinski, Martin Sauk +9 more
2018bioRxiv2 citations Open access
Semantic Scholar
Y-mer: a k-mer based method for determining human Y chromosome haplogroups from ultra-low sequencing depth data
T. Puurand, M. Möls, L. Kaplinski, Kadri Maal +4 more
2025Genome Biology1 citations Open access
Semantic Scholar
FastGT: from raw sequence reads to 30 million genotypes in 1 less than an hour 2
Fanny-Dhelia Pajuste, L. Kaplinski, M. Möls, T. Puurand +3 more
20161 citations
Semantic Scholar
Fast masking of repeated primer binding sites in eukaryotic genomes.
R. Andreson, L. Kaplinski, M. Remm
2015Methods in molecular biology1 citations
Semantic Scholar
P1408 Demonstration of the application of the tmRNA transcript of the bacterial ssrA gene as a molecular diagnostic target using a combination of NASBA and BiaCore technologies
B. Glynn, Katrina Lacey, P. Palta, L. Kaplinski +4 more
20071 citations
Semantic Scholar
K-mer based method for finding sequence type-specific PCR primers for Listeria monocytogenes
R. Andreson, Age Brauer, L. Kaplinski, T. Puurand +4 more
2026Scientific Reports0 citations Open access
Semantic Scholar
DIPLER: rapid k-mer-based locus identification
Kaur Robin Kivirüüt, L. Kaplinski, A. Salumets, T. Puurand
2026bioRxiv0 citations Open access
Semantic Scholar
K-mer based method for finding sequence type-specific PCR primers for Listeria monocytogenes
R. Andreson, A. Brauer, L. Kaplinski, M. KuÌlaots +3 more
2025medRxiv0 citations Open access
Semantic Scholar
FastGT : an alignment-free method for calling common SNVs 1 directly from raw sequencing reads 2 3
Fanny-Dhelia Pajuste, L. Kaplinski, M. Möls, T. Puurand +3 more
20170 citations
Semantic Scholar
GenomeTester4: a K-mer analyzer package for sequencing reads and genomes
M. Lepamets, L. Kaplinski, R. Andreson, M. Remm
20140 citations
Semantic Scholar
Naturally Amplified Player for Biosensing: tmRNA to the Rescue
O. Scheler, L. Kaplinski, B. Glynn, R. Bailey +1 more
20110 citations Open access
Semantic Scholar
Sensing Nitrous Oxide with Qcl-coupled Silicon-on-sapphire Ring Resonators References and Links
Clinton J. Smith, R. Shankar, M. Laderer, M. Frish +124 more
0 citations
Semantic Scholar

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