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Colin M. Diesh · SciRah

Researcher profile · Semantic Scholar

Colin M. Diesh

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Colin M. Diesh — researcher profile on SciRah

h-index: 9
Works: 34
Citations: 2,152

Most-cited papers

JBrowse 2: a modular genome browser with views of synteny and structural variation
Colin M. Diesh, Garrett J Stevens, Peter Xie, Teresa De Jesus Martinez +16 more
2022bioRxiv801 citations Open access
Semantic Scholar
JBrowse: a dynamic web platform for genome visualization and analysis
R. Buels, Eric Yao, Colin M. Diesh, R. Hayes +7 more
2016Genome Biology686 citations Open access
Semantic Scholar
Apollo: Democratizing genome annotation
Nathan A. Dunn, D. Unni, Colin M. Diesh, Monica C. Munoz-Torres +6 more
2019bioRxiv227 citations Open access
Semantic Scholar
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing
M. Šuvakov, Arijit Panda, Colin M. Diesh, Ian H. Holmes +1 more
2021GigaScience112 citations Open access
Semantic Scholar
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
C. Elsik, A. Tayal, Colin M. Diesh, Deepak R. Unni +3 more
2015Nucleic Acids Res.112 citations Open access
Semantic Scholar
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
C. Elsik, Deepak R. Unni, Colin M. Diesh, A. Tayal +3 more
2015Nucleic Acids Res.99 citations Open access
Semantic Scholar
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata
Timothy Putman, S. Lelong, Sebastian Burgstaller-Muehlbacher, A. Waagmeester +7 more
2017bioRxiv50 citations Open access
Semantic Scholar
Bovine Genome Database: new annotation tools for a new reference genome
M. Shamimuzzaman, J. L. Le Tourneau, Deepak R. Unni, Colin M. Diesh +6 more
2019Nucleic Acids Res.30 citations Open access
Semantic Scholar
JBrowseR: an R interface to the JBrowse 2 genome browser
Elliot A. Hershberg, Garrett J Stevens, Colin M. Diesh, Peter Xie +4 more
2021Bioinform.15 citations Open access
Semantic Scholar
JBrowse Jupyter: a Python interface to JBrowse 2
Teresa De Jesus Martinez, Elliot A. Hershberg, Emma Guo, Garrett J Stevens +8 more
2022bioRxiv6 citations Open access
Semantic Scholar
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome
D. Triant, J. L. Le Tourneau, Colin M. Diesh, Deepak R. Unni +17 more
2020Animal Genetics5 citations Open access
Semantic Scholar
The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics
Sontosh K. Deb, D. Kalra, J. Kubica, Erik Stricker +45 more
2024F1000Research4 citations Open access
Semantic Scholar
Setting up the JBrowse 2 genome browser
Colin M. Diesh, R. Buels, Garrett J Stevens, Caroline Bridge +3 more
2024Current Protocols3 citations Open access
Semantic Scholar
Abstract 6400: JBrowse 2: An extensible open-source platform for modern genome analysis
S. Cain, R. Haw, C. Bridge, Junjun Zhang +9 more
2022Cancer Research3 citations
Semantic Scholar
Cram-JS: reference-based decompression in node and the browser
R. Buels, S. Dider, Colin M. Diesh, James T. Robinson +1 more
2019Bioinform.2 citations Open access
Semantic Scholar
Proteins in the Genome Browser: integration of phylogenies, alignments, and structures with nucleotide-level evidence in JBrowse 2.
Colin M. Diesh, Garrett J Stevens, Caroline Bridge, Gregory Hogue +4 more
2026Journal of Molecular Biology1 citations Open access
Semantic Scholar
P1038 BovineMine: A bovine genome data mining warehouse
C. Elsik, Deepak R. Unni, A. Tayal, Colin M. Diesh +1 more
20161 citations
Semantic Scholar
Apollo 3: Multi-Species Genome Curation
Garrett J Stevens, Kyösti Sutinen, Dario Beraldi, Shashank Budhanuru Ramaraju +20 more
2026bioRxiv0 citations Open access
Semantic Scholar
Setting up JBrowse 2 for Visualizing Genome Synteny
Colin M. Diesh, Garrett J Stevens, Scott Cain, Lincoln Stein +1 more
2025Current Protocols0 citations Open access
Semantic Scholar
Abstract LB503: Using JBrowse 2 plugins to visualize cancer genomic data
R. Haw, Colin M. Diesh, C. Bridge, R. Buels +9 more
2022Cancer Research0 citations
Semantic Scholar
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine
M. Mahmoud, A. Gener, M. Khayat, A. English +42 more
2020F1000Research0 citations Open access
Semantic Scholar
Visual refinement of genome annotations with Apollo in a community environment
Nathan A. Dunn, Deepak R. Unni, Colin M. Diesh, H. Rasche +3 more
20190 citations Open access
Semantic Scholar
Efficient curation of genome annotations through collaboration with Apollo
Nathan A. Dunn, Deepak R. Unni, Colin M. Diesh, R. Buels +3 more
20190 citations Open access
Semantic Scholar
GMOD/Apollo: Apollo2.0.8-RC3(JB#d3827c)
Nathan A. Dunn, Colin M. Diesh, Deepak, S. KFan +16 more
20170 citations
Semantic Scholar
Gmod/Apollo: Release Candidate 1 - Apollo2.0.6(Jb#9334E76Fd)
Nathan A. Dunn, Colin M. Diesh, Deepak, S. KFan +13 more
20170 citations
Semantic Scholar
Lawrence Berkeley National Laboratory Recent Work Title JBrowse : A dynamic web platform for genome visualization and analysis
R. Buels, Eric Yao, Colin M. Diesh, R. Hayes +7 more
20160 citations
Semantic Scholar
Apollo: Apollo2.0.3-RC3(JB1.12.2-apollo)
Nathan A. Dunn, J. Reese, Monica C. Munoz-Torres, Aymeric Naômé +10 more
20160 citations
Semantic Scholar
Apollo: collaborative manual annotation for genomic sequencing projects
Nathan A. Dunn, Monica C. Munoz-Torres, Deepak R. Unni, Colin M. Diesh +5 more
20160 citations Open access
Semantic Scholar
Apollo: Apollo2.0.4-RC4(JB1.12.2-apollo)
Nathan A. Dunn, J. Reese, Monica C. Munoz-Torres, Aymeric Naômé +11 more
20160 citations
Semantic Scholar
Apollo: Apollo2.0.3(JB1.12.2-apollo)
Nathan A. Dunn, J. Reese, Monica C. Munoz-Torres, Aymeric Naômé +10 more
20160 citations
Semantic Scholar
Comparison of transcription factor binding sites from ChIP-seq experiments by
Colin M. Diesh
20150 citations
Semantic Scholar
C 01 : Computer Demo 1 NCBI Variation Portal : Databases and Tools for Genetic Variation Discovery , Analysis , and Interpretation
Taein Lee, Chun-Huai Cheng, S. Ficklin, Anna Blenda +17 more
20150 citations
Semantic Scholar
New Data Mining Interfaces at the Bovine Genome Database
Colin M. Diesh
20150 citations
Semantic Scholar
Hymenoptera Genome Database: 2014 Update
Colin M. Diesh
20140 citations
Semantic Scholar

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