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S. Schroeder · SciRah

Researcher profile · Semantic Scholar

S. Schroeder

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S. Schroeder — researcher profile on SciRah

h-index: 19
Works: 52
Citations: 3,691

Most-cited papers

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.
D. Mathews, M. Disney, Jessica L. Childs, S. Schroeder +2 more
2004Proceedings of the National Academy of Sciences of the United States of America1,616 citations Open access
Semantic Scholar
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
T. Xia, J. SantaLucia, M. Burkard, R. Kierzek +4 more
1998Biochemistry1,157 citations Open access
Semantic Scholar
Optical Melting Measurements of Nucleic Acid Thermodynamics
S. Schroeder, D. Turner
2009Methods in Enzymology101 citations Open access
Semantic Scholar
Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
G. Blaha, Güliz Gürel, S. Schroeder, P. Moore +1 more
2008Journal of Molecular Biology90 citations Open access
Semantic Scholar
Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA.
S. Schroeder, D. Turner
2000Biochemistry66 citations
Semantic Scholar
The structures of antibiotics bound to the E site region of the 50 S ribosomal subunit of Haloarcula marismortui: 13-deoxytedanolide and girodazole.
S. Schroeder, G. Blaha, J. Tirado-Rives, T. Steitz +1 more
2007Journal of Molecular Biology53 citations Open access
Semantic Scholar
Advances in RNA Structure Prediction from Sequence: New Tools for Generating Hypotheses about Viral RNA Structure-Function Relationships
S. Schroeder
2009Journal of Virology48 citations Open access
Semantic Scholar
Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints.
S. Schroeder, Jonathan W. Stone, Samuel Bleckley, Theodore R. Gibbons +1 more
2011Biophysical Journal43 citations Open access
Semantic Scholar
Thermodynamic stabilities of internal loops with GU closing pairs in RNA.
S. Schroeder, D. Turner
2001Biochemistry43 citations
Semantic Scholar
The energetics of small internal loops in RNA
S. Schroeder, M. Burkard, Douglas H. Turner
1999Biopolymers41 citations
Semantic Scholar
Challenges and approaches to predicting RNA with multiple functional structures
S. Schroeder
2018RNA: A publication of the RNA Society36 citations Open access
Semantic Scholar
Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
S. Schroeder, G. Blaha, P. Moore
2007Antimicrobial Agents and Chemotherapy35 citations Open access
Semantic Scholar
G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides.
S. Schroeder, James Kim, Douglas H. Turner
1996Biochemistry34 citations
Semantic Scholar
3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices.
Koree Clanton-Arrowood, J. Mcgurk, S. Schroeder
2008Biochemistry27 citations Open access
Semantic Scholar
NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs.
B. Tolbert, S. Kennedy, S. Schroeder, T. Krugh +1 more
2007Biochemistry27 citations Open access
Semantic Scholar
Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects
Jeffrey Zuber, S. Schroeder, Hongying Sun, D. Turner +1 more
2022Nucleic Acids Research22 citations Open access
Semantic Scholar
Probing viral genomic structure: alternative viewpoints and alternative structures for satellite tobacco mosaic virus RNA.
S. Schroeder
2014Biochemistry21 citations
Semantic Scholar
22 Predicting RNA Secondary Structure
D. Mathews, S. Schroeder, D. Turner, M. Zuker
200621 citations
Semantic Scholar
Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes.
Xiao-Bo Gu, Mai-Thao Nguyen, Abigail E. Overacre, Samantha E. Seaton +1 more
2013Journal of Physical Chemistry B19 citations
Semantic Scholar
Thermodynamic stabilities of three-way junction nanomotifs in prohead RNA
Alyssa C. Hill, S. Schroeder
2017RNA: A publication of the RNA Society17 citations Open access
Semantic Scholar
Prohead RNA: a noncoding viral RNA of novel structure and function
Alyssa C. Hill, L. Bartley, S. Schroeder
2016Wiley Interdisciplinary Reviews - RNA17 citations Open access
Semantic Scholar
Consecutive terminal GU pairs stabilize RNA helices.
Mai-Thao Nguyen, S. Schroeder
2010Biochemistry16 citations
Semantic Scholar
Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.
S. Schroeder, M. Fountain, S. Kennedy, P. Lukavsky +3 more
2003Biochemistry16 citations
Semantic Scholar
Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix
Xiao-Bo Gu, B. Mooers, L. Thomas, Joshua Malone +2 more
2015Journal of Physical Chemistry B15 citations Open access
Semantic Scholar
Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA.
Samuel Bleckley, S. Schroeder
2012RNA: A publication of the RNA Society15 citations Open access
Semantic Scholar
Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin.
Steven Harris, S. Schroeder
2010Biochemistry14 citations
Semantic Scholar
Different Sequences Show Similar Quaternary Interaction Stabilities in Prohead Viral RNA Self-assembly*
Xiao-Bo Gu, S. Schroeder
2011Journal of Biological Chemistry13 citations Open access
Semantic Scholar
Perspectives on Viral RNA Genomes and the RNA Folding Problem
S. Schroeder
2020Viruses12 citations Open access
Semantic Scholar
Advancing viral RNA structure prediction: measuring the thermodynamics of pyrimidine-rich internal loops
Andy V Phan, Katherine Mailey, Jessica Saeki, Xiao-Bo Gu +1 more
2017RNA: A publication of the RNA Society12 citations Open access
Semantic Scholar
Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2.
B. Znosko, M. Burkard, S. Schroeder, T. Krugh +1 more
2002Biochemistry10 citations
Semantic Scholar
Surprising Sequence Effects on GU Closure of Symmetric 2×2 Nucleotide RNA Internal Loops
K. D. Berger, S. Kennedy, S. Schroeder, B. Znosko +3 more
2018Biochemistry8 citations Open access
Semantic Scholar
Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures
Samuel Bleckley, Jonathan W. Stone, S. Schroeder
2012PLoS ONE8 citations Open access
Semantic Scholar
NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions
Xiao-Bo Gu, Sun-Young Park, M. Tonelli, Gabriel Cornilescu +3 more
2016Journal of Physical Chemistry Letters5 citations Open access
Semantic Scholar
A Parallel Implementation of the Wuchty Algorithm with Additional Experimental Filters to More Thoroughly Explore RNA Conformational Space
Jonathan W. Stone, Samuel Bleckley, Sean Lavelle, S. Schroeder
2015PLoS ONE5 citations Open access
Semantic Scholar
Nucleotide Dynamics at the A-Site Cleft in the Peptidyltransferase Center of H. marismortui 50S Ribosomal Subunits.
Yuhang Wang, Jana K. Shen, S. Schroeder
2012Journal of Physical Chemistry Letters5 citations
Semantic Scholar
Swellix: a computational tool to explore RNA conformational space
Nathan Sloat, Jui-Wen Liu, S. Schroeder
2017BMC Bioinformatics3 citations Open access
Semantic Scholar
Plant Single-Cell/Nucleus RNA-seq Workflow.
Sandra Thibivilliers, A. Farmer, S. Schroeder, M. Libault
2023Methods in molecular biology2 citations
Semantic Scholar
RNA Helix Thermodynamics: The End Game
Jeffrey Zuber, S. Schroeder, Hongying Sun, D. Turner +1 more
2021bioRxiv2 citations Open access
Semantic Scholar
Radiosynthesis of O-3-(2-[18F]fluoroethyl-L-DOPA ([18F]OFED) - a new fluorine-18 labeled phenylalanine derivative
T. Kniess, S. Schroeder, A. Hoepping, J. Zessin +3 more
20162 citations
Semantic Scholar
Biophysicists’ continued outstanding response to COVID-19
T. Schlick, Eric J. Sundberg, S. Schroeder, M. Babu
2021Biophysical Journal1 citations Open access
Semantic Scholar
Biophysicists' outstanding response to Covid-19
T. Schlick, E. Sundberg, S. Schroeder, M. Babu
2021Biophysical Journal1 citations Open access
Semantic Scholar
Stack Locally and Act Globally: A Few Nucleotides Make All the Difference in Enterovirus 71 IRES Binding hnRNAP A1 and Infectious Phenotypes: Commentary on "HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation".
S. Schroeder
2017Journal of Molecular Biology1 citations
Semantic Scholar
Crumple: An Efficient Tool to Explore Thoroughly the RNA Folding Landscape.
I. Guerra, S. Schroeder
2016Methods in molecular biology1 citations
Semantic Scholar
RNA Bulge Loop that Specifically Binds Metal Ions
X. Gu, S. Schroeder
20160 citations
Semantic Scholar
Thermodynamic Stabilities of Multibranch Loops in Bacteriophage Packaging RNA
Alyssa C. Hill, S. Schroeder
20160 citations Open access
Semantic Scholar
The Search Warrant Requirement for OSHA Inspections: Upholding Business Owner's Fourth Amendment Rights - Marshall v. Barlow's, Inc.
S. Schroeder
20150 citations
Semantic Scholar
Patch file for lib-cofold.c
S. Schroeder, Jonathan W. Stone, Samuel Bleckley, Sean Lavelle
20140 citations
Semantic Scholar
Prohead RNA Sequence Variation
S. Schroeder
20110 citations Open access
Semantic Scholar
Phi29 E-loop hairpin
S. Harris, S. Schroeder
20100 citations
Semantic Scholar
Girodazole bound to the large subunit of Haloarcula marismortui
G. Blaha, S. Schroeder, J. Tirado-Rives
20070 citations
Semantic Scholar

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