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Elizabeth J. Denning · SciRah

Researcher profile · Semantic Scholar

Elizabeth J. Denning

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Elizabeth J. Denning — researcher profile on SciRah

h-index: 12
Works: 24
Citations: 5,403

Most-cited papers

MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal, Elizabeth J. Denning, T. Woolf, O. Beckstein
2011Journal of Computational Chemistry4,103 citations Open access
Semantic Scholar
Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium
K. Hart, N. Foloppe, C. M. Baker, Elizabeth J. Denning +2 more
2012Journal of Chemical Theory and Computation552 citations Open access
Semantic Scholar
Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA
Elizabeth J. Denning, U. Priyakumar, L. Nilsson, Alexander D. MacKerell
2011Journal of Computational Chemistry382 citations Open access
Semantic Scholar
Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open ↔ Closed Transitions
O. Beckstein, Elizabeth J. Denning, J. Perilla, T. Woolf
2009Journal of Molecular Biology159 citations Open access
Semantic Scholar
Computing ensembles of transitions from stable states: Dynamic Importance Sampling
J. Perilla, O. Beckstein, Elizabeth J. Denning, T. Woolf
2011Journal of Computational Chemistry47 citations Open access
Semantic Scholar
Influence of lipids on protein-mediated transmembrane transport.
Elizabeth J. Denning, O. Beckstein
2013Chemistry and Physics of Lipids42 citations Open access
Semantic Scholar
Intrinsic contribution of the 2′-hydroxyl to RNA conformational heterogeneity
Elizabeth J. Denning, Alexander D. MacKerell
2012Journal of the American Chemical Society36 citations Open access
Semantic Scholar
Protonation of Trimethylamine N-Oxide (TMAO) is required for stabilization of RNA tertiary structure
Elizabeth J. Denning, D. Thirumalai, Alexander D. MacKerell
2013Biophysical Chemistry23 citations Open access
Semantic Scholar
Impact of Arsenic/Phosphorous substitution on the intrinsic conformational properties of the phosphodiester backbone of DNA investigated using ab initio quantum mechanical calculations
Elizabeth J. Denning, Alexander D. MacKerell
2011Journal of the American Chemical Society23 citations Open access
Semantic Scholar
Impact of Geometry Optimization on Base-Base Stacking Interaction Energies in the Canonical A- and B-forms of DNA
A. McDonald, Elizabeth J. Denning, Alexander D. MacKerell
2013Journal of Physical Chemistry A16 citations Open access
Semantic Scholar
From the gating charge response to pore domain movement: Initial motions of Kv1.2 dynamics under physiological voltage changes
Elizabeth J. Denning, P. Crozier, J. Sachs, T. Woolf
2009Molecular membrane biology16 citations Open access
Semantic Scholar
Cooperative Nature of Gating Transitions in K+ Channels as seen from Dynamic Importance Sampling Calculations
Elizabeth J. Denning, T. Woolf
2010Proteins: Structure, Function, and Bioinformatics14 citations Open access
Semantic Scholar
Double bilayers and transmembrane gradients: a molecular dynamics study of a highly charged peptide.
Elizabeth J. Denning, T. Woolf
2008Biophysical Journal12 citations Open access
Semantic Scholar
The Closed Open Transition of Adenylate Kinase From Crystal Structures and Computer Simulations
O. Beckstein, Elizabeth J. Denning, T. Woolf
20092 citations Open access
Semantic Scholar
Chapter 14 Computational Models for Electrified Interfaces
Elizabeth J. Denning, T. Woolf
20081 citations
Semantic Scholar
AKeco Structure Library
O. Beckstein, T. Woolf, Elizabeth J. Denning
20150 citations
Semantic Scholar
Adenylate Kinase Potential of Mean Force
O. Beckstein, T. Woolf, J. Perilla, Elizabeth J. Denning
20140 citations
Semantic Scholar
Investigating the Conformational Dynamics of DNA with Lesions through Fluorescence-Based Technniques and Computer Simulations
Elana M. S. Stennett, David L. Dotson, Elizabeth J. Denning, O. Beckstein +1 more
20140 citations Open access
Semantic Scholar
Impact of Osmolytes on the RNA Hairpin as Studied using Molecular Dynamics Simulations
Elizabeth J. Denning, Alexander D. MacKerell
20130 citations Open access
Semantic Scholar
Impact of TMAO on the preQ1 RNA Riboswitch Studied using Molecular Dynamics Simulations
Elizabeth J. Denning, D. Thirumalai, Alexander D. MacKerell
20120 citations Open access
Semantic Scholar
Relationship of the 2′-Hydroxyl Orientation in RNA to Watson-Crick Base Pair Opening
Elizabeth J. Denning, U. Priyakumar, Alexander D. MacKerell
20110 citations Open access
Semantic Scholar
Understanding gating transitions within K+ channels using Dynamic Importance Sampling
Elizabeth J. Denning, T. Woolf
20090 citations Open access
Semantic Scholar
Exploring Initial Kv1.2 Channel Fluctuations Under Varying Transmembrane Potentials.
P. Crozier, Elizabeth J. Denning, J. Sachs, T. Woolf
20080 citations
Semantic Scholar
Monitoring peptide modification by SELDI-TOF mass spectrometry
Levi L. Blazer, Elizabeth J. Denning, C. W. Hemmis, M. Boyle +1 more
20050 citations
Semantic Scholar

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T. Woolf×12
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