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E. Swart · SciRah

Researcher profile · Semantic Scholar

E. Swart

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E. Swart — researcher profile on SciRah

h-index: 18
Works: 48
Citations: 1,668

Most-cited papers

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
E. Swart, J. Bracht, V. Magrini, P. Minx +25 more
2013PLoS Biology229 citations Open access
Semantic Scholar
The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development
Xiao Chen, J. Bracht, A. Goldman, E. Dolzhenko +8 more
2014Cell179 citations Open access
Semantic Scholar
Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
E. Swart, V. Serra, G. Petroni, M. Nowacki
2016Cell173 citations Open access
Semantic Scholar
A Functional Role for Transposases in a Large Eukaryotic Genome
M. Nowacki, B. Higgins, Genevieve M. Maquilan, E. Swart +2 more
2009Science145 citations Open access
Semantic Scholar
Genetic tool development in marine protists: emerging model organisms for experimental cell biology
Drahomíra Faktorová, R. Nisbet, J. Fernández-Robledo, E. Casacuberta +109 more
2019Nature Methods133 citations Open access
Semantic Scholar
The macronuclear genome of Stentor coeruleus reveals tiny introns in a giant cell
Mark M. Slabodnick, J. Ruby, Sarah B. Reiff, E. Swart +15 more
2017Current Biology107 citations Open access
Semantic Scholar
Functional diversification of Dicer-like proteins and small RNAs required for genome sculpting.
Pamela Y. Sandoval, E. Swart, M. Arambasic, M. Nowacki
2014Developmental Cell105 citations Open access
Semantic Scholar
The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
Samuel H. Aeschlimann, F. Jönsson, J. Postberg, N. Stover +4 more
2014Genome Biology and Evolution70 citations Open access
Semantic Scholar
Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
J. Bischerour, Simran Bhullar, Cyril Denby-Wilkes, V. Régnier +8 more
2018eLife57 citations Open access
Semantic Scholar
The Oxytricha trifallax Mitochondrial Genome
E. Swart, M. Nowacki, Justine Shum, H. Stiles +7 more
2011Genome Biology and Evolution57 citations Open access
Semantic Scholar
Two Sets of Piwi Proteins Are Involved in Distinct sRNA Pathways Leading to Elimination of Germline-Specific DNA
Dominique I. Furrer, E. Swart, Matthias F. Kraft, Pamela Y. Sandoval +1 more
2017Cell Reports44 citations Open access
Semantic Scholar
A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing
Chundi Wang, Therese Solberg, Xyrus X. Maurer-Alcalá‬, E. Swart +2 more
2022Cell Reports42 citations Open access
Semantic Scholar
Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion
E. Swart, Cyril Denby Wilkes, Pamela Y. Sandoval, M. Arambasic +2 more
2014Nucleic Acids Research36 citations Open access
Semantic Scholar
Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax.
Ke Xu, T. Doak, H. Lipps, Jingmei Wang +2 more
2012Gene33 citations
Semantic Scholar
Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination
Michael Ignarski, Aditi Singh, E. Swart, M. Arambasic +2 more
2014Nucleic Acids Research31 citations Open access
Semantic Scholar
The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation
M. Mozzicafreddo, S. Pucciarelli, E. Swart, A. Piersanti +4 more
2021Scientific Reports22 citations Open access
Semantic Scholar
Characterization and Taxonomic Validity of the Ciliate Oxytricha trifallax (Class Spirotrichea) Based on Multiple Gene Sequences: Limitations in Identifying Genera Solely by Morphology
Stephen D Zoller, R. L. Hammersmith, E. Swart, B. Higgins +3 more
2012Protist21 citations Open access
Semantic Scholar
Identification and analysis of functional associations among natural eukaryotic genome editing components
E. Swart, Cyril Denby Wilkes, Pamela Yohanna de Lourdes Sandoval, Cristina Hoehener +5 more
201718 citations Open access
Semantic Scholar
Chromatin remodeling is required for sRNA‐guided DNA elimination in Paramecium
A. Singh, Xyrus X. Maurer-Alcalá, Therese Solberg, Lilia Häußermann +4 more
2022EMBO Journal17 citations Open access
Semantic Scholar
Pdsg1 and Pdsg2, Novel Proteins Involved in Developmental Genome Remodelling in Paramecium
M. Arambasic, Pamela Y. Sandoval, Cristina Hoehener, Aditi Singh +2 more
2014PLoS ONE17 citations Open access
Semantic Scholar
The eukaryotic way to defend and edit genomes by sRNA‐targeted DNA deletion
E. Swart, M. Nowacki
2015Annals of the New York Academy of Sciences16 citations
Semantic Scholar
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes
Seolkyoung Jung, E. Swart, P. Minx, V. Magrini +3 more
2011Nucleic Acids Research15 citations Open access
Semantic Scholar
Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons
B. K. Seah, A. Singh, E. Swart
2022bioRxiv14 citations Open access
Semantic Scholar
Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma
Minakshi Singh, B. Seah, C. Emmerich, A. Singh +7 more
2023Proceedings of the National Academy of Sciences of the United States of America12 citations Open access
Semantic Scholar
MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma
B. Seah, Minakshi Singh, C. Emmerich, A. Singh +7 more
2023Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus
B. K. Seah, A. Singh, D. Vetter, Christiane Emmerich +4 more
2023bioRxiv10 citations Open access
Semantic Scholar
BleTIES: annotation of natural genome editing in ciliates using long read sequencing
B. Seah, E. Swart
2021bioRxiv8 citations Open access
Semantic Scholar
Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia.
I. Rzeszutek, E. Swart, Sylwia Pabian-Jewuła, Antonietta Russo +1 more
2022Biochimica et biophysica acta. Molecular cell research7 citations Open access
Semantic Scholar
ISWI1 complex proteins facilitate developmental genome editing in Paramecium
A. Singh, Lilia Häußermann, C. Emmerich, Emily Nischwitz +4 more
2023bioRxiv5 citations Open access
Semantic Scholar
Improved methods for bulk cultivation and fixation of Loxodes ciliates for fluorescence microscopy
B. Seah, C. Emmerich, A. Singh, E. Swart
2022bioRxiv5 citations Open access
Semantic Scholar
FRAGS: estimation of coding sequence substitution rates from fragmentary data
E. Swart, Winston A Hide, C. Seoighe
2004BMC Bioinformatics5 citations Open access
Semantic Scholar
Soma-derived 30-nt small RNAs are coupled with chromosome breakage and precisely target nontransposon DNA against elimination in Euplotes vannus
Li-Yang Lyu, Bijiao Ding, Jinyu Fu, I. Rzeszutek +3 more
2025Science Advances4 citations Open access
Semantic Scholar
When cleaning facilitates cluttering - genome editing in ciliates.
B. Seah, E. Swart
2023Trends in Genetics4 citations Open access
Semantic Scholar
RNA-dependent genome processing during nuclear differentiation: the model systems of stichotrichous ciliates.
Gloria Fuhrmann, E. Swart, M. Nowacki, H. Lipps
2013Epigenomics4 citations
Semantic Scholar
Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology
Drahomíra Faktorová, R. Nisbet, J. Fernández-Robledo, E. Casacuberta +109 more
2020Nature Methods3 citations Open access
Semantic Scholar
ISWI1 complex proteins facilitate developmental genome editing in Paramecium
A. Singh, Lilia Häußermann, Christiane Emmerich, Emily Nischwitz +4 more
2024Genome Research2 citations Open access
Semantic Scholar
How did UGA codon translation as tryptophan evolve in certain ciliates? A critique of Kachale et al. 2023 Nature
E. Swart, Christiane Emmerich, Kwee Boon Brandon Seah, Minakshi Singh +2 more
2023bioRxiv2 citations Open access
Semantic Scholar
RNA-mediated nucleosome depletion is required for elimination of transposon-derived DNA
Aditi Singh, Xyrus X. Maurer-Alcalá, Therese Solberg, Silvan Gisler +3 more
2022bioRxiv2 citations Open access
Semantic Scholar
The Blepharisma stoltei macronuclear genome: towards the origins of whole genome reorganization
Minakshi Singh, B. Seah, C. Emmerich, Aditi Singh +7 more
20212 citations Open access
Semantic Scholar
Emergent metabolic parasitism driven by organelle sequestration
Holly V. Moeller, E. Lasek-Nesselquist, Zachary L. Reitz, Christopher Paight +4 more
2025bioRxiv1 citations Open access
Semantic Scholar
Genome editing excisase origins illuminated by somatic genome of Blepharisma
Minakshi Singh, Kwee Boon Brandon Seah, C. Emmerich, A. Singh +7 more
2022bioRxiv1 citations Open access
Semantic Scholar
MITE infestation of germline accommodated by genome editing in Blepharisma
B. Seah, Minakshi Singh, C. Emmerich, A. Singh +7 more
2022bioRxiv1 citations Open access
Semantic Scholar
Spliceosome loss in the red tide ciliate Mesodinium rubrum presents a symbiotic cul-de-sac
B. K. Seah, Nurislam Shaikhutdinov, Wesley C. Demontigny, E. Lasek-Nesselquist +17 more
2026bioRxiv0 citations Open access
Semantic Scholar
Two paralogous PHD finger proteins participate in natural genome editing in Paramecium tetraurelia
Lilia Häußermann, A. Singh, E. Swart
2024bioRxiv0 citations Open access
Semantic Scholar
Author response: Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
J. Bischerour, Simran Bhullar, Cyril Denby-Wilkes, V. Régnier +8 more
20180 citations Open access
Semantic Scholar
Comparison of key ciliate macronuclear genomes.
E. Swart, J. Bracht, V. Magrini, P. Minx +25 more
20130 citations Open access
Semantic Scholar
The information-dense genomes of Oxytricha trifallax
E. Swart
20120 citations
Semantic Scholar
Comparative genomics of Oxytricha and related spirotrichous ciliates : Minimal eukaryotic genome architectures
T. Doak, Yi Zhou, E. Swart, L. Landweber +4 more
20070 citations
Semantic Scholar

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Aditi Singh — researcher profile on SciRah

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