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S. Twigger · SciRah

Researcher profile · Semantic Scholar

S. Twigger

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S. Twigger — researcher profile on SciRah

h-index: 24
Works: 48
Citations: 6,410

Most-cited papers

Genome sequence of the Brown Norway rat yields insights into mammalian evolution
R. Gibbs, G. Weinstock, M. Metzker, D. Muzny +224 more
2004Nature2,146 citations Open access
Semantic Scholar
The Gene Ontology project in 2008
M. Harris, Jennifer I. Deegan, A. Ireland, J. Lomax +82 more
2007Nucleic Acids Res.804 citations Open access
Semantic Scholar
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
Ryan K. C. Yuen, D. Merico, M. Bookman, J. Howe +79 more
2017Nature Neuroscience759 citations Open access
Semantic Scholar
Big data: The future of biocuration
Authorship Doug Howe, M. Costanzo, P. Fey, T. Gojobori +9 more
2008Nature758 citations Open access
Semantic Scholar
Progress and prospects in rat genetics: a community view
T. Aitman, J. Critser, E. Cuppen, A. Dominiczak +27 more
2008Nature Genetics304 citations
Semantic Scholar
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.
R. Steen, A. Kwitek-Black, C. Glenn, J. Gullings-Handley +27 more
1999Genome Research191 citations Open access
Semantic Scholar
Comparative proteomic analysis of PAI‐1 and TNF‐alpha‐derived endothelial microparticles
Danielle B. Peterson, Tara L. Sander, Sushma Kaul, Bassam T. Wakim +5 more
2008Proteomics145 citations Open access
Semantic Scholar
The Rat Genome Database, update 2007—Easing the path from disease to data and back again
S. Twigger, M. Shimoyama, Susan K. Bromberg, A. Kwitek +1 more
2006Nucleic Acids Res.142 citations Open access
Semantic Scholar
Interoperability with Moby 1.0--it's better than sharing your toothbrush!
M. Wilkinson, Martin Senger, Edward A. Kawas, R. Bruskiewich +55 more
2008Briefings in Bioinformatics118 citations Open access
Semantic Scholar
Rat Genome Database (RGD): mapping disease onto the genome
S. Twigger, Jian Lu, M. Shimoyama, Dan Chen +12 more
2002Nucleic Acids Res.109 citations Open access
Semantic Scholar
ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels
B. Halligan, V. Ruotti, Weihong Jin, Scott Laffoon +2 more
2004Nucleic Acids Res.107 citations Open access
Semantic Scholar
The Rat Genome Database 2009: variation, ontologies and pathways
M. Dwinell, Elizabeth A. Worthey, M. Shimoyama, Burcu Bakir-Gungor +9 more
2008Nucleic Acids Res.84 citations Open access
Semantic Scholar
ZoomQuant: An application for the quantitation of stable isotope labeled peptides
B. Halligan, Ronit Y Slyper, S. Twigger, Wayne A Hicks +2 more
2005Journal of the American Society for Mass Spectrometry73 citations Open access
Semantic Scholar
Low Cost, Scalable Proteomics Data Analysis Using Amazon's Cloud Computing Services and Open Source Search Algorithms
B. Halligan, Joey Geiger, Andrew K Vallejos, A. Greene +1 more
2009Journal of Proteome Research67 citations Open access
Semantic Scholar
The Rat Genome Database (RGD): developments towards a phenome database
N. D. de la Cruz, Susan K. Bromberg, D. Pasko, M. Shimoyama +24 more
2004Nucleic Acids Res.67 citations Open access
Semantic Scholar
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Chisato Yamasaki, K. Murakami, Yasuyuki Fujii, Yoshiharu Sato +134 more
2007Nucleic Acids Res.66 citations Open access
Semantic Scholar
Phylogenetics of rat inbred strains
Michael A. Thomas, Chin-Fu Chen, M. Jensen-Seaman, P. Tonellato +1 more
2003Mammalian Genome55 citations Open access
Semantic Scholar
What everybody should know about the rat genome and its online resources
S. Twigger, K. Pruitt, X. M. Fernández-Suárez, D. Karolchik +8 more
2008Nature Genetics50 citations Open access
Semantic Scholar
Automated construction of high-density comparative maps between rat, human, and mouse.
A. Kwitek, P. Tonellato, Dan-Dan Chen, J. Gullings-Handley +10 more
2001Genome Research40 citations Open access
Semantic Scholar
InterMOD: integrated data and tools for the unification of model organism research
J. Sullivan, K. Karra, Sierra A. T. Moxon, Andrew Vallejos +20 more
2013Scientific Reports34 citations Open access
Semantic Scholar
PROTEIN COMPOSITION OF PLASMINOGEN ACTIVATOR INHIBITOR TYPE 1-DERIVED ENDOTHELIAL MICROPARTICLES
Tara L. Sander, J. Ou, John C. Densmore, Sushma Kaul +6 more
2008Shock29 citations Open access
Semantic Scholar
Tools and strategies for physiological genomics: the Rat Genome Database.
S. Twigger, D. Pasko, Jeff Nie, M. Shimoyama +28 more
2005Physiological Genomics29 citations Open access
Semantic Scholar
Simultaneous quantification and identification using 18O labeling with an ion trap mass spectrometer and the analysis software application “ZoomQuant”
Wayne A Hicks, B. Halligan, Ronit Y Slyper, S. Twigger +2 more
2005Journal of the American Society for Mass Spectrometry26 citations Open access
Semantic Scholar
The Rat Genome Database Curators: Who, What, Where, Why
M. Shimoyama, G. Hayman, S. Laulederkind, Rajni Nigam +8 more
2009PLoS Comput. Biol.25 citations Open access
Semantic Scholar
Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.
S. Twigger, Jeff Nie, V. Ruotti, Jia-Ming Yu +12 more
2004Genome Research22 citations Open access
Semantic Scholar
DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy
B. Halligan, V. Ruotti, S. Twigger, A. Greene
2005Nucleic Acids Res.21 citations Open access
Semantic Scholar
The Rat Genome Database Pathway Portal
V. Petri, M. Shimoyama, G. Hayman, J. Smith +7 more
2011Database J. Biol. Databases Curation20 citations Open access
Semantic Scholar
Exploring Phenotypic Data at the Rat Genome Database
S. Twigger, J. S. Smith, Angela Zuniga-Meyer, Susan K. Bromberg
2006Current Protocols in Bioinformatics20 citations
Semantic Scholar
High-throughput scanning of the rat genome using interspersed repetitive sequence-PCR markers.
C. Gösele, Liu Hong, T. Kreitler, Marlies Rossmann +14 more
2000Genomics17 citations
Semantic Scholar
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data
S. Laulederkind, M. Shimoyama, G. Hayman, T. Lowry +12 more
2011Database J. Biol. Databases Curation15 citations Open access
Semantic Scholar
Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics
G. N. Phillips, B. Fox, J. Markley, B. Volkman +9 more
2007Journal of Structural and Functional Genomics10 citations
Semantic Scholar
PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.
Danny Yoo, I. Xu, T. Berardini, S. Rhee +2 more
2006Current Protocols in Bioinformatics9 citations
Semantic Scholar
Peptide identification using peptide amino acid attribute vectors.
B. Halligan, E. Dratz, Xin Feng, S. Twigger +2 more
2004Journal of Proteome Research9 citations
Semantic Scholar
Environmental change in Shrospshire during the last 13000 years
S. Twigger, C. Haslam
19919 citations
Semantic Scholar
Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets
S. Twigger, Joey Geiger, J. Smith
2009Workshop on Semantic Web Applications and Tools for Life Sciences7 citations
Semantic Scholar
Using Comparative Genomics to Leverage Animal Models in the Identification of Cancer Genes. Examples in Prostate Cancer.
M. Datta, M. Suckow, S. Twigger, M. Pollard +2 more
2005Cancer Genomics & Proteomics3 citations
Semantic Scholar
ChromSorter PC: A database of chromosomal regions associated with human prostate cancer
Ann Etim, Guohui Zhou, X. Wen, Hang Liu +7 more
2004BMC Genomics3 citations Open access
Semantic Scholar
A new method for identifying informative genetic markers in selectively bred rats
D. Weinshenker, Malania M. Wilson, K. Williams, J. M. Weiss +2 more
2005Mammalian Genome2 citations
Semantic Scholar
Of rats and men
S. Twigger
2004Genome Biology2 citations Open access
Semantic Scholar
Analysis of Crime Data and Finding Frequent Patterns using Hadoop and Data Analytic Techniques
Aniket B. Wakde, Shravani J. Uttarwar, Sudarshan D. Waydande, Purvesh Shende +27 more
20191 citations
Semantic Scholar
CORRIGENDUM: InterMOD: integrated data and tools for the unification of model organism research
J. Sullivan, K. Karra, Sierra A. T. Moxon, Andrew Vallejos +20 more
2013Scientific Reports1 citations Open access
Semantic Scholar
SiMAP: Systems and Integrative Molecular Atlas of Physiology
K. Heilman, S. Twigger, Li-Min Lu, Jennifer L. Pietrusz +2 more
20071 citations
Semantic Scholar
10th International Symposium on SHR and Molecular Medicine¶May 2 – 4, 2001, Berlin-Buch
S. Twigger, Jian Lu, M. Shimoyama, D. Pasko +14 more
2001Journal of molecular medicine1 citations
Semantic Scholar
User Ranking Based Social Network Platform for Cloud Environment
M. Costanzo, P. Fey, T. Gojobori, L. Hannick +7 more
20150 citations
Semantic Scholar
Original article The Rat Genome Database Pathway Portal
V. Petri, M. Shimoyama, G. Hayman, J. Smith +5 more
20110 citations
Semantic Scholar
Gene Ontology Users Meeting Use of Genomeknowledgebase for Pathway Storage. Genmapp V2: a Tool for Viewing and Analyzing Microarray Data on Biological Pathways. Linking Ontologies with the Cobra Ontology Editor. Integrating Go and Go Annotations with the Ingenuity Ontology
M. Shimoyama, Lan Zhao, Weiye Wang, S. Twigger +4 more
20040 citations
Semantic Scholar
Map of the Laboratory Rat A High-Density Integrated Genetic Linkage and Radiation Hybrid
R. Steen, A. Kwitek-Black, C. Glenn, J. Gullings-Handley +27 more
19990 citations
Semantic Scholar

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