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R. Fernando · SciRah

Researcher profile · Semantic Scholar

R. Fernando

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R. Fernando — researcher profile on SciRah

h-index: 46
Works: 248
Citations: 12K

Most-cited papers

Efficient strategies for leave-one-out cross validation for genomic best linear unbiased prediction
Hao Cheng, D. Garrick, R. Fernando
2017Journal of Animal Science and Biotechnology218 citations Open access
Semantic Scholar
Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens
Huiyu Wang, I. Misztal, I. Aguilar, A. Legarra +6 more
2014Frontiers in Genetics200 citations Open access
Semantic Scholar
A class of Bayesian methods to combine large numbers of genotyped and non-genotyped animals for whole-genome analyses
R. Fernando, J. Dekkers, D. Garrick
2014Genetics Selection Evolution195 citations Open access
Semantic Scholar
Implementation of genomic selection in the poultry industry
A. Wolc, A. Kranis, J. Arango, P. Settar +9 more
2016109 citations Open access
Semantic Scholar
Response and inbreeding from a genomic selection experiment in layer chickens
A. Wolc, Hong-Hua H. Zhao, J. Arango, P. Settar +9 more
2015Genetics Selection Evolution90 citations Open access
Semantic Scholar
Computational strategies for alternative single-step Bayesian regression models with large numbers of genotyped and non-genotyped animals
R. Fernando, Hao Cheng, B. Golden, D. Garrick
2016Genetics Selection Evolution82 citations Open access
Semantic Scholar
Application of Whole-Genome Prediction Methods for Genome-Wide Association Studies: A Bayesian Approach
R. Fernando, A. Toosi, A. Wolc, D. Garrick +1 more
201475 citations Open access
Semantic Scholar
JWAS: Julia implementation of Whole-genome Analyses Software
Hao Cheng, R. Fernando, D. Garrick
201874 citations
Semantic Scholar
Genomic Prediction from Multiple-Trait Bayesian Regression Methods Using Mixture Priors
Hao Cheng, K. Kızılkaya, Jian Zeng, D. Garrick +1 more
2018Genetics65 citations Open access
Semantic Scholar
An Upper Bound for Accuracy of Prediction Using GBLUP
E. Karaman, Hao Cheng, M. Fırat, D. Garrick +1 more
2016PLoS ONE64 citations Open access
Semantic Scholar
Cross-validation of best linear unbiased predictions of breeding values using an efficient leave-one-out strategy.
Jian Cheng, J. Dekkers, R. Fernando
2021Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie56 citations Open access
Semantic Scholar
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
C. Baes, M. Dolezal, J. Koltes, B. Bapst +11 more
2014BMC Genomics48 citations Open access
Semantic Scholar
Comparison of alternative approaches to single-trait genomic prediction using genotyped and non-genotyped Hanwoo beef cattle
Joonho Lee, Hao Cheng, D. Garrick, B. Golden +4 more
2017Genetics Selection Evolution43 citations Open access
Semantic Scholar
A fast and efficient Gibbs sampler for BayesB in whole-genome analyses
Hao Cheng, L. Qu, D. Garrick, R. Fernando
2015Genetics Selection Evolution38 citations Open access
Semantic Scholar
Effects of number of training generations on genomic prediction for various traits in a layer chicken population
Zi-Qing Weng, A. Wolc, Xia Shen, R. Fernando +6 more
2016Genetics Selection Evolution37 citations Open access
Semantic Scholar
Reduction in accuracy of genomic prediction for ordered categorical data compared to continuous observations
K. Kızılkaya, R. Fernando, D. Garrick
2014Genetics Selection Evolution34 citations Open access
Semantic Scholar
A Multiple-Trait Bayesian Lasso for Genome-Enabled Analysis and Prediction of Complex Traits
D. Gianola, R. Fernando
2019Genetics33 citations Open access
Semantic Scholar
The Accuracy and Bias of Single-Step Genomic Prediction for Populations Under Selection
W. Hsu, D. Garrick, R. Fernando
2016G3: Genes, Genomes, Genetics33 citations Open access
Semantic Scholar
Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers.
M. Heidaritabar, A. Wolc, J. Arango, J. Zeng +7 more
2016Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie32 citations Open access
Semantic Scholar
The evolution of methodologies for genomic prediction
D. Garrick, J. Dekkers, R. Fernando
201427 citations
Semantic Scholar
An efficient exact method to obtain GBLUP and single-step GBLUP when the genomic relationship matrix is singular
R. Fernando, Hao Cheng, D. Garrick
2016Genetics Selection Evolution25 citations Open access
Semantic Scholar
Identification of recombination hotspots and quantitative trait loci for recombination rate in layer chickens
Zi-Qing Weng, A. Wolc, Hai-Lin Su, R. Fernando +6 more
2019Journal of Animal Science and Biotechnology24 citations Open access
Semantic Scholar
Genome-wide association study of infectious bovine keratoconjunctivitis in Angus cattle
K. Kızılkaya, R. Tait, D. Garrick, R. Fernando +1 more
2013BMC Genetics24 citations Open access
Semantic Scholar
XSim: Simulation of Descendants from Ancestors with Sequence Data
Hao Cheng, D. Garrick, R. Fernando
2015G3: Genes, Genomes, Genetics23 citations Open access
Semantic Scholar
Genetic Analysis of Antibody Response to Porcine Reproductive and Respiratory Syndrome Vaccination as an Indicator Trait for Reproductive Performance in Commercial Sows
L. Sanglard, R. Fernando, K. Gray, Daniel C. L. Linhares +3 more
2020Frontiers in Genetics22 citations Open access
Semantic Scholar
Mixture models detect large effect QTL better than GBLUP and result in more accurate and persistent predictions
A. Wolc, J. Arango, P. Settar, J. Fulton +4 more
2016Journal of Animal Science and Biotechnology22 citations Open access
Semantic Scholar
Contributions of linkage disequilibrium and co-segregation information to the accuracy of genomic prediction
Xiaochen Sun, R. Fernando, J. Dekkers
2016Genetics Selection Evolution22 citations Open access
Semantic Scholar
Interpretable artificial neural networks incorporating Bayesian alphabet models for genome-wide prediction and association studies
Tian-Jing Zhao, R. Fernando, Hao Cheng
2021bioRxiv21 citations Open access
Semantic Scholar
Genome-wide mapping of quantitative trait loci in admixed populations using mixed linear model and Bayesian multiple regression analysis
A. Toosi, R. Fernando, J. Dekkers
2018Genetics Selection Evolution21 citations Open access
Semantic Scholar
A comparison of identity‐by‐descent and identity‐by‐state matrices that are used for genetic evaluation and estimation of variance components
R. Fernando, H. Cheng, X. Sun, D. Garrick
2017Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie19 citations
Semantic Scholar
Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize
Jin-Liang Yang, C. Yeh, Raghuprakash Kastoori Ramamurthy, Xinshuai Qi +5 more
2018G3: Genes, Genomes, Genetics16 citations Open access
Semantic Scholar
Improved Accuracy of Genomic Prediction for Traits with Rare QTL by Fitting Haplotypes
Xiaochen Sun, R. Fernando, D. Garrick, J. Dekkers
201516 citations Open access
Semantic Scholar
Genomic prediction in hybrid breeding: I. Optimizing the training set design
A. Melchinger, R. Fernando, C. Stricker, C. Schön +1 more
2023Theoretical and Applied Genetics15 citations Open access
Semantic Scholar
Genome-wide association study of disease resilience traits from a natural polymicrobial disease challenge model in pigs identifies the importance of the major histocompatibility complex region
Jian Cheng, R. Fernando, Hao Cheng, S. Kachman +7 more
2021G315 citations Open access
Semantic Scholar
Tests of association based on genomic windows can lead to spurious associations when using genotype panels with heterogeneous SNP densities
Jinghui Li, Zi-Gui Wang, R. Fernando, Hao Cheng
2021Genetics Selection Evolution14 citations Open access
Semantic Scholar
XSim version 2: simulation of modern breeding programs
C. J. Chen, D. Garrick, R. Fernando, E. Karaman +3 more
2022G313 citations Open access
Semantic Scholar
Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses
L. Sanglard, Yijian Huang, K. Gray, Daniel C. L. Linhares +4 more
2021Genetics Selection Evolution12 citations Open access
Semantic Scholar
Fast parallelized sampling of Bayesian regression models for whole-genome prediction
Tian-Jing Zhao, R. Fernando, D. Garrick, Hao Cheng
2020Genetics Selection Evolution11 citations Open access
Semantic Scholar
Exact Distribution of Linkage Disequilibrium in the Presence of Mutation, Selection, or Minor Allele Frequency Filtering
J. Qu, S. Kachman, D. Garrick, R. Fernando +1 more
2019bioRxiv11 citations Open access
Semantic Scholar
Efficient genetic value prediction using incomplete omics data
Matthias Westhues, C. Heuer, G. Thaller, R. Fernando +1 more
2019Theoretical and Applied Genetics10 citations
Semantic Scholar
Inferring trait-specific similarity among individuals from molecular markers and phenotypes with Bayesian regression.
D. Gianola, R. Fernando, C. Schön
2019Theoretical Population Biology9 citations Open access
Semantic Scholar
Accuracy of genomic prediction of shell quality in a White Leghorn line
A. Wolc, W. Drobik-Czwarno, T. Jankowski, J. Arango +5 more
2020Poultry Science8 citations Open access
Semantic Scholar
Genomic prediction and genome-wide association studies in beef and dairy cattle.
D. Garrick, R. Fernando, A. Ruvinsky
20158 citations
Semantic Scholar
Accuracy of prediction of simulated polygenic phenotypes and their underlying quantitative trait loci genotypes using real or imputed whole-genome markers in cattle
Saeed Hassani, M. Saatchi, R. Fernando, D. Garrick
2015Genetics Selection Evolution7 citations Open access
Semantic Scholar
Genomics of response to porcine reproductive and respiratory syndrome virus in purebred and crossbred sows: antibody response and performance following natural infection vs. vaccination
L. Sanglard, Felipe M W Hickmann, Yijian Huang, K. Gray +6 more
2021Journal of Animal Science5 citations Open access
Semantic Scholar
307. A Bayesian hierarchical model to integrate a mechanistic growth model in genomic prediction
H. Yu, J. van Milgen, E. Knol, R. Fernando +1 more
2022Proceeding of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)4 citations
Semantic Scholar
Prediction Accuracy of Pedigree and Genomic Estimated Breeding Values over Generations in Layer Chickens
Zi-Qing Weng, A. Wolc, R. Fernando, J. Dekkers +5 more
20144 citations Open access
Semantic Scholar
Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations
S. Alemu, P. Bijma, M. Calus, Hui-Ming Liu +2 more
2022Genetics Selection Evolution3 citations Open access
Semantic Scholar
363. JWAS version 2: leveraging biological information and highthroughput phenotypes into genomic prediction and association
H. Cheng, R. Fernando, D. Garrick, T. Zhao +1 more
2022Proceeding of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)3 citations
Semantic Scholar
A multiple-trait Bayesian Lasso for genome-enabled analysis and prediction of complex traits
D. Gianola, R. Fernando
2019bioRxiv3 citations Open access
Semantic Scholar

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