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Naoaki Sakamoto · SciRah

Researcher profile · Semantic Scholar

Naoaki Sakamoto

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Naoaki Sakamoto — researcher profile on SciRah

h-index: 25
Works: 87
Citations: 2,559

Most-cited papers

Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9
Shota Nakade, T. Tsubota, Yuto Sakane, S. Kume +7 more
2014Nature Communications473 citations Open access
Semantic Scholar
Sticky DNA: self-association properties of long GAA.TTC repeats in R.R.Y triplex structures from Friedreich's ataxia.
Naoaki Sakamoto, Paul Chastain, P. Parniewski, Keiichi Ohshima +3 more
1999Molecules and Cells334 citations Open access
Semantic Scholar
Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
T. Sakuma, H. Ochiai, T. Kaneko, T. Mashimo +7 more
2013Scientific Reports224 citations Open access
Semantic Scholar
Sticky DNA, a Self-associated Complex Formed at Long GAA·TTC Repeats in Intron 1 of the Frataxin Gene, Inhibits Transcription*
Naoaki Sakamoto, K. Ohshima, L. Montermini, M. Pandolfo +1 more
2001Journal of Biological Chemistry186 citations Open access
Semantic Scholar
GGA·TCC-interrupted Triplets in Long GAA·TTC Repeats Inhibit the Formation of Triplex and Sticky DNA Structures, Alleviate Transcription Inhibition, and Reduce Genetic Instabilities*
Naoaki Sakamoto, J. E. Larson, R. R. Iyer, L. Montermini +2 more
2001Journal of Biological Chemistry94 citations Open access
Semantic Scholar
High efficiency TALENs enable F0 functional analysis by targeted gene disruption in Xenopus laevis embryos
Ken-ichi T. Suzuki, Yukiko Isoyama, K. Kashiwagi, T. Sakuma +5 more
2013Biology Open86 citations Open access
Semantic Scholar
T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo.
Takuya Fuchikami, K. Mitsunaga‐Nakatsubo, S. Amemiya, Toshiya Hosomi +12 more
2002Development85 citations
Semantic Scholar
Decreased expression of hypothalamic neuropeptides in Huntington disease transgenic mice with expanded polyglutamine‐EGFP fluorescent aggregates
S. Kotliarova, N. Jana, Naoaki Sakamoto, Masaru Kurosawa +15 more
2005Journal of Neurochemistry84 citations
Semantic Scholar
Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases
H. Ochiai, Kazumasa Fujita, Ken-ichi T. Suzuki, M. Nishikawa +3 more
201070 citations Open access
Semantic Scholar
Sodium channel β4 subunit: down‐regulation and possible involvement in neuritic degeneration in Huntington's disease transgenic mice
F. Oyama, Haruko Miyazaki, Naoaki Sakamoto, C. Becquet +9 more
2006Journal of Neurochemistry68 citations
Semantic Scholar
Viable Neuronopathic Gaucher Disease Model in Medaka (Oryzias latipes) Displays Axonal Accumulation of Alpha-Synuclein
Norihito Uemura, M. Koike, Satoshi Ansai, M. Kinoshita +10 more
201663 citations
Semantic Scholar
A nonpathogenic GAAGGA repeat in the Friedreich gene: Implications for pathogenesis
Keiichi Ohshima, Naoaki Sakamoto, M. Labuda, J. Poirier +5 more
1999Neurology54 citations
Semantic Scholar
Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos
H. Ochiai, Naoaki Sakamoto, Kazumasa Fujita, M. Nishikawa +6 more
2012Proceedings of the National Academy of Sciences of the United States of America42 citations Open access
Semantic Scholar
HpSulf, a heparan sulfate 6-O-endosulfatase, is involved in the regulation of VEGF signaling during sea urchin development.
Kazumasa Fujita, Eri Takechi, Naoaki Sakamoto, Noriko Sumiyoshi +6 more
2010Mechanisms of Development38 citations Open access
Semantic Scholar
The egg nucleus regulates the behavior of sperm nuclei as well as cycling of MPF in physiologically polyspermic newt eggs.
Yasuhiro Iwao, Naoaki Sakamoto, K. Takahara, M. Yamashita +1 more
1993Developmental Biology35 citations
Semantic Scholar
Two isoforms of orthodenticle-related proteins (HpOtx) bind to the enhancer element of sea urchin arylsulfatase gene.
Naoaki Sakamoto, K. Akasaka, K. Mitsunaga‐Nakatsubo, Kazuko Takata +2 more
1997Developmental Biology34 citations Open access
Semantic Scholar
Establishment of expanded and streamlined pipeline of PITCh knock-in – a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh-TG and PITCh-KIKO
Kazuki Nakamae, Yuki Nishimura, Mitsumasa Takenaga, Shota Nakade +4 more
2017Bioengineered32 citations Open access
Semantic Scholar
The 3’UTR of Nanos2 directs enrichment in the germ cell lineage of the sea urchin
Nathalie Oulhen, Takaya Yoshida, Mamiko Yajima, Jia L. Song +4 more
2013Developmental Biology30 citations Open access
Semantic Scholar
Differential expression of sea urchin Otx isoform (hpOtxE and HpOtxL) mRNAs during early development.
K. Mitsunaga‐Nakatsubo, K. Akasaka, Naoaki Sakamoto, Kazuko Takata +4 more
1998International Journal of Developmental Biology30 citations
Semantic Scholar
Establishment of knockout adult sea urchins by using a CRISPR‐Cas9 system
Da-Ming Liu, A. Awazu, T. Sakuma, Takashi Yamamoto +1 more
2019Development, Growth and Differentiation29 citations
Semantic Scholar
In vivo tracking of histone H3 lysine 9 acetylation in Xenopus laevis during tail regeneration
Miyuki Suzuki, Chiyo Takagi, S. Miura, Yuto Sakane +10 more
2016Genes to Cells29 citations
Semantic Scholar
Targeted mutagenesis in the sea urchin embryo using zinc‐finger nucleases
H. Ochiai, Kazumasa Fujita, Ken-ichi T. Suzuki, M. Nishikawa +3 more
2010Genes to Cells29 citations Open access
Semantic Scholar
Structure and function of a sea urchin orthodenticle-related gene (HpOtx).
Takae Kiyama, K. Akasaka, Kazuko Takata, Keiko Mitsunaga-Nakatsubo +2 more
1998Developmental Biology27 citations Open access
Semantic Scholar
Viable Neuronopathic Gaucher Disease Model in Medaka (Oryzias latipes) Displays Axonal Accumulation of Alpha-Synuclein
Norihito Uemura, M. Koike, Satoshi Ansai, M. Kinoshita +9 more
2015PLoS Genetics25 citations Open access
Semantic Scholar
Pro‐apoptotic protein kinase Cδ is associated with intranuclear inclusions in a transgenic model of Huntington's disease
Evgeny A. Zemskov, N. Jana, Masaru Kurosawa, Haruko Miyazaki +3 more
2003Journal of Neurochemistry25 citations
Semantic Scholar
Biased genome editing using the local accumulation of DSB repair molecules system
Shota Nakade, K. Mochida, Atsushi Kunii, Kazuki Nakamae +5 more
2018Nature Communications24 citations Open access
Semantic Scholar
Role of the nanos homolog during sea urchin development
T. Fujii, Naoaki Sakamoto, H. Ochiai, Kazumasa Fujita +4 more
2009Developmental Dynamics23 citations Open access
Semantic Scholar
Targeted mutagenesis in sea urchin embryos using TALENs
Sayaka Hosoi, T. Sakuma, Naoaki Sakamoto, Takashi Yamamoto
2014Development, Growth and Differentiation22 citations
Semantic Scholar
LOC-Based High-Throughput Cell Morphology Analysis System
Qingyi Gu, T. Kawahara, T. Aoyama, T. Takaki +3 more
2015IEEE Transactions on Automation Science and Engineering19 citations
Semantic Scholar
Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus.
H. Ochiai, Naoaki Sakamoto, Asuka Momiyama, K. Akasaka +1 more
2008Mechanisms of Development19 citations Open access
Semantic Scholar
Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos.
T. Fujii, K. Mitsunaga‐Nakatsubo, I. Saito, Hiroka Iida +3 more
2006Gene Expression Patterns19 citations
Semantic Scholar
Implication of HpEts in Gene Regulatory Networks Responsible for Specification of Sea Urchin Skeletogenic Primary Mesenchyme Cells
Mamiko Yajima, Rieko Umeda, Takuya Fuchikami, M. Kataoka +3 more
2010Zoological Science17 citations
Semantic Scholar
CRISPR-Cas9 editing of non-coding genomic loci as a means of controlling gene expression in the sea urchin
Alice Pieplow, Meseret Dastaw, T. Sakuma, Naoaki Sakamoto +4 more
2021Developmental Biology16 citations Open access
Semantic Scholar
Cilia play a role in breaking left–right symmetry of the sea urchin embryo
A. Takemoto, Tatsuo Miyamoto, Fumie Simono, N. Kurogi +5 more
2016Genes to Cells16 citations Open access
Semantic Scholar
The Ars insulator facilitates I‐SceI meganuclease‐mediated transgenesis in the sea urchin embryo
H. Ochiai, Naoaki Sakamoto, Ken-ichi T. Suzuki, K. Akasaka +1 more
2008Developmental Dynamics15 citations Open access
Semantic Scholar
Nucleosome exclusion from the interspecies-conserved central AT-rich region of the Ars insulator.
Haruna Takagi, Yutaka Inai, Shun-ichiro Watanabe, Sayuri Tatemoto +4 more
2012Journal of Biochemistry (Tokyo)13 citations
Semantic Scholar
Functional analysis of the sea urchin‐derived arylsulfatase (Ars)‐element in mammalian cells
Satoshi Watanabe, Sachiko Watanabe, Naoaki Sakamoto, Masahiro Sato +1 more
2006Genes to Cells11 citations Open access
Semantic Scholar
Mammalian arylsulfatase A functions as a novel component of the extracellular matrix
Kazumasa Fujita, Naoko Teramura, S. Hattori, S. Irie +5 more
2010Connective Tissue Research10 citations
Semantic Scholar
Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence
Shuhei Isami, Naoaki Sakamoto, H. Nishimori, A. Awazu
2015PLoS ONE9 citations Open access
Semantic Scholar
Dicer is Required for the Normal Development of Sea Urchin, Hemicentrotus pulcherrimus
Yuka Okamitsu, Takashi Yamamoto, T. Fujii, H. Ochiai +1 more
2010Zoological Science9 citations
Semantic Scholar
DNA variations within the sea urchin Otx gene enhancer
Takashi Yamamoto, Rie Kawamoto, T. Fujii, Naoaki Sakamoto +1 more
2007FEBS Letters9 citations
Semantic Scholar
Utilization of a particle gun DNA introduction system for the analysis of cis-regulatory elements controlling the spatial expression pattern of the arylsulfatase gene (HpArs) in sea urchin embryos
M. Kurita, Hitoshi Kondoh, K. Mitsunaga‐Nakatsubo, Taishin Shimotori +5 more
2003Development, Genes and Evolution8 citations
Semantic Scholar
A Triplex DMA Structure of the Polypyrimidine: Polypurine Stretch in the 5′ Flanking Region of the Sea Urchin Arylsulfatase Gene
Naoaki Sakamoto, K. Akasaka, Takashi Yamamoto, H. Shimada
1996Zoological Science8 citations Open access
Semantic Scholar
Possibilities of skin coat color-dependent risks and risk factors of squamous cell carcinoma and deafness of domestic cats inferred via RNA-seq data
A. Awazu, Daigo Takemoto, Kaichi Watanabe, Naoaki Sakamoto
2023bioRxiv7 citations Open access
Semantic Scholar
Identification of the genes encoding candidate septate junction components expressed during early development of the sea urchin, Strongylocentrotus purpuratus, and evidence of a role for Mesh in the formation of the gut barrier.
Sima Jonusaite, Nathalie Oulhen, Yasushi Izumi, M. Furuse +4 more
2022Developmental Biology6 citations Open access
Semantic Scholar
Automated Grooming Detection of Mouse by Three-Dimensional Convolutional Neural Network
Naoaki Sakamoto, Koji Kobayashi, T. Yamamoto, Sakura Masuko +2 more
2022Frontiers in Behavioral Neuroscience6 citations Open access
Semantic Scholar
Dynamic changes in the interchromosomal interaction of early histone gene loci during development of sea urchin
M. Matsushita, H. Ochiai, Ken-ichi T. Suzuki, Sayaka Hayashi +3 more
2017Journal of Cell Science6 citations
Semantic Scholar
Corrected Structure of the 5′ Flanking Region of Arylsulfatase Gene of the Sea Urchin, Hemicentrotus pulcherrimus
K. Akasaka, Naoaki Sakamoto, Takashi Yamamoto, J. Morokuma +4 more
1994Development, Growth and Differentiation6 citations Open access
Semantic Scholar
The Crucial Role of CTCF in Mitotic Progression during Early Development of Sea Urchin
Kaichi Watanabe, Megumi Fujita, Kazuko Okamoto, H. Yoshioka +5 more
2023bioRxiv5 citations Open access
Semantic Scholar
A new G‐stretch‐DNA‐binding protein, Unichrom, displays cell‐cycle‐dependent expression in sea urchin embryos
Kosho Moritani, H. Tagashira, Taishin Shimotori, Naoaki Sakamoto +7 more
2004Development, Growth and Differentiation5 citations
Semantic Scholar

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Takashi Yamamoto×29
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Takashi Yamamoto — researcher profile on SciRah
K. Akasaka×14
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K. Akasaka — researcher profile on SciRah
T. Sakuma×11
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T. Sakuma — researcher profile on SciRah
H. Ochiai×10
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H. Shimada — researcher profile on SciRah

K. Mitsunaga‐Nakatsubo×7

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K. Mitsunaga‐Nakatsubo — researcher profile on SciRah

Kazuko Takata×7

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Kazuko Takata — researcher profile on SciRah

Ken-ichi T. Suzuki×6

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Ken-ichi T. Suzuki — researcher profile on SciRah

Kazumasa Fujita×6

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Kazumasa Fujita — researcher profile on SciRah

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A. Awazu — researcher profile on SciRah

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R. Wells — researcher profile on SciRah

Tatsuo Miyamoto×4

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Tatsuo Miyamoto — researcher profile on SciRah