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S. Vigneau · SciRah

Researcher profile · Semantic Scholar

S. Vigneau

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S. Vigneau — researcher profile on SciRah

h-index: 24
Works: 80
Citations: 4,995

Most-cited papers

Spatially organized multicellular immune hubs in human colorectal cancer
K. Pelka, Matan Hofree, Jonathan H. Chen, Siranush Sarkizova +68 more
2021Cell811 citations Open access
Semantic Scholar
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M. Slyper, Caroline B. M. Porter, O. Ashenberg, Julia Waldman +46 more
2019Nature Medicine636 citations Open access
Semantic Scholar
Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma
Kevin Bi, Meng X. He, Z. Bakouny, Abhay Kanodia +26 more
2021Cancer Cell547 citations Open access
Semantic Scholar
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
O. Rozenblatt-Rosen, A. Regev, Philipp Oberdoerffer, T. Nawy +362 more
2020Cell514 citations Open access
Semantic Scholar
Multiple origins of Cajal-Retzius cells at the borders of the developing pallium
Franck Bielle, Amélie Griveau, N. Narboux-Nême, S. Vigneau +4 more
2005Nature Neuroscience467 citations
Semantic Scholar
A single-cell landscape of high-grade serous ovarian cancer
B. Izar, I. Tirosh, E. Stover, Isaac Wakiro +30 more
2020Nature Medicine430 citations Open access
Semantic Scholar
Genomic Imprinting Mechanisms in Mammals
Folami Y. Ideraabdullah, S. Vigneau, M. Bartolomei
2008Mutation research230 citations Open access
Semantic Scholar
KDM5 histone demethylase activity links cellular transcriptomic heterogeneity to therapeutic resistance
Kunihiko Hinohara, Hua-Jun Wu, S. Vigneau, Thomas O. McDonald +24 more
2018Cancer Cell219 citations Open access
Semantic Scholar
Transcriptional mediators of treatment resistance in lethal prostate cancer
Meng X. He, Michael S. Cuoco, J. Crowdis, Alice Bosma-Moody +33 more
2021Nature Medicine164 citations Open access
Semantic Scholar
Wild type microglia do not arrest pathology in mouse models of Rett syndrome
Jie-Qi Wang, J. Wegener, Teng-Wei Huang, S. Sripathy +36 more
2015Nature150 citations Open access
Semantic Scholar
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
J. Klughammer, D. Abravanel, Å. Segerstolpe, Timothy R. Blosser +55 more
2024Nature Medicine114 citations Open access
Semantic Scholar
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features
K. Essien, S. Vigneau, S. Apreleva, Larry N. Singh +2 more
2009Genome Biology96 citations Open access
Semantic Scholar
An essential role for the DXPas34 tandem repeat and Tsix transcription in the counting process of X chromosome inactivation.
S. Vigneau, Sandrine Augui, Pablo Navarro, P. Avner +1 more
2006Proceedings of the National Academy of Sciences of the United States of America86 citations
Semantic Scholar
CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation
Robert N. Plasschaert, S. Vigneau, I. Tempera, Ravi Gupta +8 more
2013Nucleic Acids Research72 citations Open access
Semantic Scholar
Diversity of developing peripheral glia revealed by single cell RNA sequencing
Ozge E. Tasdemir-Yilmaz, N. Druckenbrod, Olubusola Olukoya, Weixiu Dong +10 more
2021Developmental Cell54 citations Open access
Semantic Scholar
dbMAE: the database of autosomal monoallelic expression
Virginia Savova, Jon Patsenker, S. Vigneau, Alexander A. Gimelbrant
2015Nucleic Acids Research45 citations Open access
Semantic Scholar
Chromatin Signature Identifies Monoallelic Gene Expression Across Mammalian Cell Types
Anwesha Nag, S. Vigneau, Virginia Savova, Lillian M. Zwemer +1 more
2015G3: Genes, Genomes, Genetics41 citations Open access
Semantic Scholar
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity
Anand G. Patel, O. Ashenberg, Natalie B. Collins, Å. Segerstolpe +53 more
2024bioRxiv37 citations Open access
Semantic Scholar
A role for non-coding Tsix transcription in partitioning chromatin domains within the mouse X-inactivation centre
Pablo Navarro, S. Chantalat, Mario H. Foglio, C. Chureau +4 more
2009Epigenetics & Chromatin33 citations Open access
Semantic Scholar
Autosomal monoallelic expression: genetics of epigenetic diversity?
Virginia Savova, S. Vigneau, Alexander A. Gimelbrant
2013Current Opinion in Genetics and Development31 citations
Semantic Scholar
Intertumoral lineage diversity and immunosuppressive transcriptional programs in well-differentiated gastroenteropancreatic neuroendocrine tumors
Samantha E. Hoffman, Todd W. Dowrey, Carlos Villacorta Martin, Kevin Bi +31 more
2022bioRxiv30 citations Open access
Semantic Scholar
Diversity of developing peripheral glia revealed by single cell RNA sequencing
OE Tasdemir-Yilmaz, NR Druckenbrod, OO Olukoya, A. Yung +9 more
2020bioRxiv26 citations Open access
Semantic Scholar
KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance
Kunihiko Hinohara, Hua-Jun Wu, S. Vigneau, Thomas O. McDonald +24 more
2019Cancer Cell26 citations Open access
Semantic Scholar
High prevalence of clonal monoallelic expression
S. Vigneau, S. Vinogradova, Virginia Savova, Alexander A. Gimelbrant
2018Nature Genetics25 citations
Semantic Scholar
Micronized cocoa butter particles produced by a supercritical process
J. Letourneau, S. Vigneau, P. Gonus, J. Fages
200522 citations Open access
Semantic Scholar
Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M. Slyper, Caroline B. M. Porter, O. Ashenberg, Julia Waldman +46 more
2020Nature Medicine20 citations Open access
Semantic Scholar
A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma
William Zhao, Thinh Nguyen, A. Bhagwat, Akhil Kumar +29 more
2025Nature Cancer16 citations Open access
Semantic Scholar
Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma
Kevin Bi, M. He, Z. Bakouny, Abhay Kanodia +26 more
2025Cancer Cell12 citations Open access
Semantic Scholar
MaGIC: a machine learning tool set and web application for monoallelic gene inference from chromatin
S. Vinogradova, Sachit D. Saksena, Henry N. Ward, S. Vigneau +1 more
2018BMC Bioinformatics9 citations Open access
Semantic Scholar
RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes
Saumya Gupta, D. Lafontaine, S. Vigneau, A. Mendelevich +6 more
2021G38 citations Open access
Semantic Scholar
Cellular reprogramming during anti-PD-1 and chemotherapy treatment in early-stage primary hormone receptor-positive breast cancer
Jing-Xin Fu, A. Waks, E. Pimenta, Breanna M. Titchen +17 more
2025Nature Communications6 citations Open access
Semantic Scholar
DNA methylation is a key mechanism for maintaining monoallelic expression on autosomes
Saumya Gupta, D. Lafontaine, S. Vigneau, S. Vinogradova +11 more
2020bioRxiv5 citations Open access
Semantic Scholar
H19 in the pouch
M. Bartolomei, S. Vigneau, M. O'Neill
2008Nature Genetics5 citations Open access
Semantic Scholar
Single-cell epigenetic profiling reveals a tumor-intrinsic interferon response program in ccRCC tied to poor prognosis and BAP1 loss
S. Camp, M. He, Michael S. Cuoco, Amanda E. Garza +25 more
2026Science Advances4 citations Open access
Semantic Scholar
Single-cell epigenetic profiling reveals an interferon response-high program associated with BAP1 deficiency in kidney cancer
S. Camp, Meng X. He, Michael S. Cuoco, E. Saad +20 more
2024bioRxiv4 citations Open access
Semantic Scholar
CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation
Robert N. Plasschaert, S. Vigneau, I. Tempera, Ravi Gupta +8 more
2014Nucleic Acids Research4 citations Open access
Semantic Scholar
Mapping the Transcriptional Landscape of Drug Responses in Primary Human Cells Using High-Throughput DRUG-seq
L. Baugh, S. Vigneau, S. Sridhar, Sarah A. Boswell +8 more
2026bioRxiv3 citations
Semantic Scholar
A cellular and spatial atlas of TP53-associated tissue remodeling in lung adenocarcinoma
William Zhao, Benjamin Kepecs, N. Mahadevan, Å. Segerstolpe +19 more
2023bioRxiv3 citations Open access
Semantic Scholar
Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer
K. Pelka, Matan Hofree, Jonathan H. Chen, Siranush Sarkizova +67 more
2021bioRxiv3 citations Open access
Semantic Scholar
Mechanism of monoallelic expression and allelic rheostat role of DNA methylation
Saumya Gupta, D. Lafontaine, S. Vigneau, S. Vinogradova +11 more
20202 citations
Semantic Scholar
Metastatic Osteosarcoma is Characterized by Loss of Osteoblastic Lineage Fidelity
Yutaro Tanaka, James J. Morrow, Salvador Casaní-Galdón, E. Pimenta +33 more
2026bioRxiv1 citations Open access
Semantic Scholar
Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
J. Klughammer, D. Abravanel, Å. Segerstolpe, Timothy R. Blosser +55 more
2025Nature Medicine1 citations Open access
Semantic Scholar
Abstract PD6-03: Spatio-molecular dissection of the breast cancer metastatic microenvironment
D. Abravanel, J. Klughammer, Timothy R. Blosser, Y. Goltsev +43 more
2022Cancer Research1 citations
Semantic Scholar
HTAPP_Dissociation of human ovarian cancer resection to a single-cell suspension for single-cell RNA-seq v2
Isaac Wakiro, S. Napolitano, Jing-Yi Wu, S. Vigneau +4 more
2020protocols.io1 citations Open access
Semantic Scholar
Corrigendum: Wild-type microglia do not reverse pathology in mouse models of Rett syndrome
Jie-Qi Wang, J. Wegener, Teng-Wei Huang, S. Sripathy +36 more
2015Nature1 citations Open access
Semantic Scholar
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis
Folami Y. Ideraabdullah, S. Vigneau, M. Bartolomei
20081 citations
Semantic Scholar
Spatial omics resolves adrenergic and mesenchymal cell states in neuroblastoma.
Anand G. Patel, O. Ashenberg, Natalie B. Collins, Justina McEvoy +66 more
2026Cancer Cell0 citations
Semantic Scholar
Abstract C012: Dissecting the reorganization of pancreatic tumor microenvironments after radiation and immunotherapy reveals insights into immunotherapy resistance
Arnav Mehta, A. Parikh, M. Parikh, R. Park +25 more
2022Cancer Research0 citations
Semantic Scholar
HTAPP_Acquisition and allocation of fresh metastatic breast cancer samples v1
K. Helvie, L. DelloStritto, L. Marini, Nelly Oliver +5 more
20210 citations Open access
Semantic Scholar
HTAPP_Dissociation of primary neuroblastoma resection to a single-cell suspension for single-cell RNA-seq (using papain, density gradient, and optionally ACK) v1
S. Napolitano, Jing-Yi Wu, M. Slyper, S. Vigneau +4 more
20210 citations Open access
Semantic Scholar

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