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Urminder Singh · SciRah

Researcher profile · Semantic Scholar

Urminder Singh

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Urminder Singh — researcher profile on SciRah

h-index: 16
Works: 33
Citations: 803

Most-cited papers

Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
Joseph W. Guarnieri, Joseph M. Dybas, Hossein Fazelinia, Man S. Kim +47 more
2023Science Translational Medicine165 citations Open access
Semantic Scholar
PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea
Urminder Singh, N. Khemka, M. Rajkumar, R. Garg +1 more
2017Nucleic Acids Research117 citations Open access
Semantic Scholar
Role of miR-2392 in driving SARS-CoV-2 infection
J. Mcdonald, F. Enguita, Deanne M. Taylor, R. Griffin +44 more
2021Cell Reports75 citations Open access
Semantic Scholar
Sequence analysis orfipy: a fast and flexible tool for extracting ORFs
Urminder Singh, E. Wurtele
202170 citations
Semantic Scholar
phylostratr: A framework for phylostratigraphy
Z. Arendsee, Jing Li, Urminder Singh, Arun S. Seetharam +2 more
2018bioRxiv48 citations Open access
Semantic Scholar
System-wide transcriptome damage and tissue identity loss in COVID-19 patients
Jiwoon Park, J. Foox, Tyler D. Hether, D. Danko +44 more
2022Cell Reports Medicine37 citations Open access
Semantic Scholar
Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development.
Ananya Neogy, Tushar Garg, Anil Kumar, A. Dwivedi +6 more
2019Plant and Cell Physiology33 citations
Semantic Scholar
TARGETED DOWN REGULATION OF CORE MITOCHONDRIAL GENES DURING SARS-COV-2 INFECTION
Joseph W. Guarnieri, Joseph M. Dybas, Hossein Fazelinia, Man S. Kim +39 more
2022bioRxiv31 citations Open access
Semantic Scholar
Foster thy young: enhanced prediction of orphan genes in assembled genomes
Jing Li, Urminder Singh, Priyanka Bhandary, J. Campbell +3 more
2019bioRxiv29 citations Open access
Semantic Scholar
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
Urminder Singh, M. Hur, K. Dorman, E. Wurtele
2019bioRxiv27 citations Open access
Semantic Scholar
How new genes are born
Urminder Singh, E. SyrkinWurtele
2020eLife20 citations Open access
Semantic Scholar
fagin: synteny-based phylostratigraphy and finer classification of young genes
Z. Arendsee, Jing Li, Urminder Singh, Priyanka Bhandary +2 more
2019BMC Bioinformatics20 citations Open access
Semantic Scholar
Space radiation damage rescued by inhibition of key spaceflight associated miRNAs
J. McDonald, Jangkeun Kim, Lily Farmerie, Meghan L Johnson +33 more
2024Nature Communications19 citations Open access
Semantic Scholar
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Jiwoon Park, J. Foox, Tyler D. Hether, D. Danko +43 more
2021bioRxiv18 citations Open access
Semantic Scholar
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
Urminder Singh, K. Hernandez, B. Aronow, E. Wurtele
2021Scientific Reports18 citations Open access
Semantic Scholar
pyrpipe: a Python package for RNA-Seq workflows
Urminder Singh, Jing Li, Arun S. Seetharam, E. Wurtele
2020bioRxiv17 citations Open access
Semantic Scholar
Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data
Jing Li, Urminder Singh, Z. Arendsee, E. Wurtele
2019bioRxiv15 citations Open access
Semantic Scholar
orfipy: a fast and flexible tool for extracting ORFs
Urminder Singh, E. Wurtele
2020bioRxiv13 citations Open access
Semantic Scholar
Ensemble of deep long short term memory networks for labelling origin of replication sequences
Urminder Singh, Sucheta Chauhan, Annangarachari Krishnamachari, Lovekesh Vig
2015International Conference on Data Science and Advanced Analytics10 citations
Semantic Scholar
SARS-CoV-2 Orphan Gene ORF10 Contributes to More Severe COVID-19 Disease
Jeffrey Haltom, Nidia S. Trovao, Joseph W. Guarnieri, P. Vincent +15 more
2023medRxiv5 citations Open access
Semantic Scholar
The Great Deceiver: miR-2392’s Hidden Role in Driving SARS-CoV-2 Infection
J. Mcdonald, F. Enguita, Deanne M. Taylor, R. Griffin +44 more
2021bioRxiv5 citations Open access
Semantic Scholar
Differential expression of COVID-19-related genes in European Americans and African Americans
Urminder Singh, E. Wurtele
2020bioRxiv3 citations Open access
Semantic Scholar
Importance of De Novo Gene Evolution to Emerging Viral Threats: The ORF10 Strain-Restricted Orphan Gene of SARS-CoV-2 Promotes Pathogenesis
Jeffrey A Haltom, N. Trovão, Joseph W. Guarnieri, Vincent Pan +15 more
2025Molecular biology and evolution2 citations Open access
Semantic Scholar
A pan-tissue, pan-disease compendium of human orphan genes
Urminder Singh, Jeffrey Haltom, Joseph W. Guarnieri, Jing Li +4 more
2024bioRxiv2 citations Open access
Semantic Scholar
Recycling RNA-Seq Data to Identify Candidate Orphan Genes for Experimental Analysis
Jing Li, Z. Arendsee, Urminder Singh, E. Wurtele
20192 citations
Semantic Scholar
synder: inferring genomic orthologs from synteny maps
Z. Arendsee, Andrew P. Wilkey, Urminder Singh, Jing Li +2 more
2019bioRxiv2 citations Open access
Semantic Scholar
Corrigendum to: Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development.
Ananya Neogy, Tushar Garg, Anil Kumar, A. Dwivedi +6 more
2021Plant and Cell Physiology1 citations Open access
Semantic Scholar
ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes
Urminder Singh, Kushal S. Shah, S. Dhar, V. Singh +1 more
2019Journal of Open Source Software1 citations Open access
Semantic Scholar
178 Tumor neoantigen prioritization from liquid biopsy whole exome sequencing for selected tumor-infiltrating lymphocyte therapy
Urminder Singh, Christian E. Laing, J. Gibson, Anna Kluew +15 more
2023Regular and Young Investigator Award Abstracts0 citations Open access
Semantic Scholar
Accuracy of functional gene community detection in Saccharomyces cerevisiae by maximizing Generalized Modularity Density
Pramesh Singh, Jiahao Guo, Jing Li, Urminder Singh +2 more
2022bioRxiv0 citations Open access
Semantic Scholar
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures
Urminder Singh, K. Hernandez, B. Aronow, E. Wurtele
20200 citations Open access
Semantic Scholar
Machine Learning-Based Annotation of Long Noncoding RNAs Using PLncPRO.
N. Khemka, Urminder Singh, A. Dwivedi, Mukesh Jain
2020Methods in molecular biology0 citations
Semantic Scholar
2-19-2019 synder : inferring genomic orthologs from synteny maps
Z. Arendsee, Andrew P. Wilkey, Urminder Singh, Jing Li +2 more
20190 citations
Semantic Scholar

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