Shihao Ma

Most-cited papers

1. AGILE platform: a deep learning powered approach to accelerate LNP development for mRNA delivery

   Yue Xu, Shihao Ma, Haotian Cui, Jin-Gan Chen +9 more

   2024Nature Communications191 citations Open access

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2. BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

   Adibvafa Fallahpour, Andrew Magnuson, Purav Gupta, Shihao Ma +7 more

   2025Neural Information Processing Systems56 citations

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3. Moving towards genome-wide data integration for patient stratification with Integrate Any Omics

   Shihao Ma, Andy G. X. Zeng, Benjamin Haibe-Kains, Anna Goldenberg +2 more

   2025Nature Machine Intelligence21 citations

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4. X-Cell: Scaling Causal Perturbation Prediction Across Diverse Cellular Contexts via Diffusion Language Models

   Chloe Wang, Mehran Karimzadeh, Neal G. Ravindra, Lexi R. Bounds +26 more

   2026bioRxiv19 citations Open access

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5. Deep learning for automatic organ and tumor segmentation in nanomedicine pharmacokinetics

   Alexander Dhaliwal, Jun Ma, Mark Zheng, Q. Lyu +7 more

   2024Theranostics18 citations Open access

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6. BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning

   Adibvafa Fallahpour, A. Seyed-Ahmadi, Parsa Idehpour, Omar Ibrahim +31 more

   2026bioRxiv15 citations Open access

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7. Comparison of Machine Learning and Conventional Statistical Modeling for Predicting Readmission Following Acute Heart Failure Hospitalization.

   K. Abdul-Samad, Shihao Ma, David E Austin, A. Chong +6 more

   2024American Heart Journal13 citations

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8. Integrate Any Omics: Towards genome-wide data integration for patient stratification

   Shihao Ma, Andy G. X. Zeng, B. Haibe-Kains, Anna Goldenberg +2 more

   2024arXiv.org8 citations

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9. Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL

   Xingyu Chen, Shihao Ma, Runsheng Lin, Jie-Cong Lin +1 more

   2025Neural Information Processing Systems5 citations

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10. Establishing the Utility of Deep Learning for H&E-Based Meningioma Molecular Classification and Outcome Prediction

    A. Landry, F. Nassiri, Leeor S. Yefet, H. Lalchungnunga +18 more

    2026Skull Base1 citations

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11. Deep learning for H&E-based meningioma molecular classification and outcome prediction: a retrospective cohort study.

    A. Landry, F. Nassiri, Leeor S. Yefet, H. Lalchungnunga +20 more

    2026The Lancet Digital Health0 citations Open access

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12. metasnf: Meta Clustering with Similarity Network Fusion in R

    Prashanth S. Velayudhan, Xiaoqiao Xu, Prajkta S. Kallurkar, Ana Patricia Balbon +12 more

    2024arXiv.org0 citations

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13. Abstract 14312: Comparison of Machine Learning and Conventional Statistical Modeling for Predicting Readmissions Following Acute Heart Failure Hospitalization

    K. Abdul-Samad, Shihao Ma, Alice Chong, Chloe Wang +6 more

    2023Circulation0 citations

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