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M. Shi · SciRah

Researcher profile · Semantic Scholar

M. Shi

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M. Shi — researcher profile on SciRah

h-index: 59
Works: 176
Citations: 17K

Most-cited papers

Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients
Yong Xiong, Yuan Liu, Liu Cao, Dehe Wang +15 more
2020Emerging Microbes and Infections1,040 citations Open access
Semantic Scholar
RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak
Liangjun Chen, Weiyong Liu, Qi Zhang, Ke Xu +13 more
2020Emerging Microbes and Infections556 citations Open access
Semantic Scholar
Virome characterization of game animals in China reveals a spectrum of emerging pathogens
Wanting He, Xin Hou, Jin Zhao, Jiumeng Sun +18 more
2022Cell228 citations Open access
Semantic Scholar
ICTV Virus Taxonomy Profile: Rhabdoviridae 2022
P. Walker, J. Freitas-Astúa, N. Bejerman, K. Blasdell +13 more
2022Journal of General Virology160 citations
Semantic Scholar
Using artificial intelligence to document the hidden RNA virosphere
Xin Hou, Yong He, Pan Fang, Shi-qiang Mei +21 more
2024bioRxiv153 citations Open access
Semantic Scholar
Enteric involvement in hospitalised patients with COVID-19 outside Wuhan
Yun-Le Wan, Jie Li, Lihan Shen, Yi-Feng Zou +16 more
2020The Lancet Gastroenterology and Hepatology138 citations Open access
Semantic Scholar
Phylogenetics, Genomic Recombination, and NSP2 Polymorphic Patterns of Porcine Reproductive and Respiratory Syndrome Virus in China and the United States in 2014–2018
Fang Yu, Yi Yan, M. Shi, Hai-Zhou Liu +13 more
2020Journal of Virology129 citations Open access
Semantic Scholar
Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies.
A. Buček, J. Šobotník, Shulin He, M. Shi +5 more
2019Current Biology128 citations Open access
Semantic Scholar
Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications
Hao-Ming Wu, R. Pang, Tong Cheng, Liang Xue +8 more
2020mSystems123 citations Open access
Semantic Scholar
Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential
Jing Wang, Yuanfei Pan, Li-fen Yang, Wei-hong Yang +19 more
2023Nature Communications110 citations Open access
Semantic Scholar
Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes
V. Marcelino, M. Wille, A. Hurt, D. GONZÁLEZ-ACUÑA +7 more
2019BMC Biology95 citations Open access
Semantic Scholar
Sustained RNA virome diversity in Antarctic penguins and their ticks
M. Wille, Erin Harvey, M. Shi, D. GONZÁLEZ-ACUÑA +2 more
2020The ISME Journal89 citations Open access
Semantic Scholar
Clinical and epidemiological features of COVID-19 family clusters in Beijing, China
Rui Song, Bing Han, Meihua Song, Lin Wang +8 more
2020Journal of Infection85 citations Open access
Semantic Scholar
Novel hepatitis D-like agents in vertebrates and invertebrates
Wei-Shan Chang, J. Pettersson, Callum Le Lay, M. Shi +4 more
2019Virus Evolution81 citations Open access
Semantic Scholar
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
J. Kuhn, J. Abe, S. Adkins, S. Alkhovsky +183 more
2023Journal of General Virology78 citations Open access
Semantic Scholar
Rapid isolation and immune profiling of SARS-CoV-2 specific memory B cell in convalescent COVID-19 patients via LIBRA-seq
B. He, Shuning Liu, Yuan-Yuan Wang, Meng-Xin Xu +24 more
2021Signal Transduction and Targeted Therapy77 citations Open access
Semantic Scholar
Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe
J. Pettersson, M. Shi, J. Eden, E. Holmes +1 more
2019bioRxiv77 citations Open access
Semantic Scholar
Virome heterogeneity and connectivity in waterfowl and shorebird communities
M. Wille, M. Shi, M. Klaassen, A. Hurt +1 more
2019The ISME Journal77 citations Open access
Semantic Scholar
Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics
Rowena Chong, M. Shi, C. Grueber, E. Holmes +3 more
2019Journal of Virology69 citations Open access
Semantic Scholar
2022 TAXONOMIC UPDATE OF PHYLUM Negarnaviricota (Riboviria: Orthornavirae), INCLUDING THE LARGE ORDERS Bunyavirales AND Mononegavirales
J. Kuhn, S. Adkins, S. Alkhovsky, T. Avšič-Županc +177 more
2022Archives of Virology67 citations Open access
Semantic Scholar
Association between the nasopharyngeal microbiome and metabolome in patients with COVID-19
Jing Liu, Sheng Liu, Zhao Zhang, X. Lee +16 more
2021Synthetic and Systems Biotechnology54 citations Open access
Semantic Scholar
A new lineage of segmented RNA viruses infecting animals
Darren J. Obbard, M. Shi, K. Roberts, B. Longdon +1 more
2019bioRxiv52 citations Open access
Semantic Scholar
Trafficked Malayan pangolins contain viral pathogens of humans
Wen-Qiang Shi, M. Shi, Teng-Cheng Que, Xiao-Ming Cui +23 more
2022Nature Microbiology49 citations Open access
Semantic Scholar
Feline Calicivirus Virulent Systemic Disease: Clinical Epidemiology, Analysis of Viral Isolates and In Vitro Efficacy of Novel Antivirals in Australian Outbreaks
M. Bordicchia, T. Fumian, Kate van Brussel, Alice G. Russo +9 more
2021Viruses49 citations Open access
Semantic Scholar
Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites
J. Mahar, M. Shi, R. Hall, T. Strive +1 more
2020Journal of Virology45 citations Open access
Semantic Scholar
RNA virome abundance and diversity is associated with host age in a bird species.
M. Wille, M. Shi, A. Hurt, M. Klaassen +1 more
2021Virology44 citations Open access
Semantic Scholar
Analysis of Recombinant Characteristics Based on 949 PRRSV-2 Genomic Sequences Obtained from 1991 to 2021 Shows That Viral Multiplication Ability Contributes to Dominant Recombination
X. Cui, Dasong Xia, Xinyi Huang, Yue Sun +7 more
2022Microbiology spectrum43 citations Open access
Semantic Scholar
A Convenient and Biosafe Replicon with Accessory Genes of SARS-CoV-2 and Its Potential Application in Antiviral Drug Discovery
Yun-Yun Jin, Han-Wen Lin, Liu Cao, Wei-Chen Wu +11 more
2021Virologica Sinica41 citations Open access
Semantic Scholar
Metatranscriptomic Analysis of Virus Diversity in Urban Wild Birds with Paretic Disease
Wei-Shan Chang, J. Eden, Jane Hall, M. Shi +2 more
2020Journal of Virology38 citations Open access
Semantic Scholar
The adenosine analog prodrug ATV006 is orally bioavailable and has preclinical efficacy against parental SARS-CoV-2 and variants
Liu Cao, Ying-Jun Li, Si-Yu Yang, Guanguan Li +36 more
2022Science Translational Medicine37 citations Open access
Semantic Scholar
Virome of Bat-Infesting Arthropods: Highly Divergent Viruses in Different Vectors
Ziqian Xu, Yun Feng, Xin-xin Chen, M. Shi +5 more
2021Journal of Virology37 citations Open access
Semantic Scholar
Unmapped RNA Virus Diversity in Termites and Their Symbionts
Callum Le Lay, M. Shi, A. Buček, T. Bourguignon +2 more
2020Viruses35 citations Open access
Semantic Scholar
Tamdy Virus in Ixodid Ticks Infesting Bactrian Camels, Xinjiang, China, 2018
Hong Zhou, Zheng-Hai Ma, Tao Hu, Y. Bi +8 more
2019Emerging Infectious Diseases33 citations Open access
Semantic Scholar
High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection
Ci-Xiu Li, Wei Li, Jun Zhou, Bing Zhang +5 more
2020Scientific Reports32 citations Open access
Semantic Scholar
Jingchuvirales: a New Taxonomical Framework for a Rapidly Expanding Order of Unusual Monjiviricete Viruses Broadly Distributed among Arthropod Subphyla
Nicholas Di Paola, N. Dheilly, S. Junglen, S. Paraskevopoulou +3 more
2022Applied and Environmental Microbiology31 citations Open access
Semantic Scholar
The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats
Kate van Brussel, Xiu-Wang Wang, M. Shi, M. Carrai +5 more
2022Transboundary and Emerging Diseases31 citations Open access
Semantic Scholar
A total infectome approach to understand the etiology of infectious disease in pigs
Xin-Yi Huang, Weichen Wu, Xiao-Xiao Tian, Xin Hou +16 more
2022Microbiome31 citations Open access
Semantic Scholar
A Novel Virus of Flaviviridae Associated with Sexual Precocity in Macrobrachium rosenbergii
Xuan Dong, Guohao Wang, Tao Hu, Juan Li +13 more
2021mSystems31 citations Open access
Semantic Scholar
Zoonotic risk assessment among farmed mammals.
Meng Lu, Wanting He, J. Pettersson, G. Baele +4 more
2023Cell30 citations Open access
Semantic Scholar
Insights into the evolutionary history and epidemiological characteristics of the emerging lineage 1 porcine reproductive and respiratory syndrome viruses in China.
Yan-Kuo Sun, Yong-Jie Chen, Yu Cai, Qi Li +11 more
2020Transboundary and Emerging Diseases30 citations Open access
Semantic Scholar
A remarkably diverse and well-organized virus community in a filter-feeding oyster
Jing-Zhe Jiang, Yihan Fang, Hong-Ying Wei, Peng Zhu +13 more
2023Microbiome29 citations Open access
Semantic Scholar
Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China
M. Shi, Su Zhao, Bin Yu, Wei-Chen Wu +13 more
2022PLoS Pathogens29 citations Open access
Semantic Scholar
A time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes
Yun Feng, Qin-yu Gou, Wei-hong Yang, Wei-Chen Wu +4 more
2022Virus Evolution28 citations Open access
Semantic Scholar
Comparative global B cell receptor repertoire difference induced by SARS-CoV-2 infection or vaccination via single-cell V(D)J sequencing
B. He, Shuning Liu, Meng-Xin Xu, Yunqi Hu +22 more
2022Emerging Microbes and Infections28 citations Open access
Semantic Scholar
Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates
Ashleigh F. Porter, J. Pettersson, Wei-Shan Chang, Erin Harvey +6 more
2020Virus Evolution26 citations Open access
Semantic Scholar
The diversity and evolutionary relationships of ticks and tick-borne bacteria collected in China
Jun-Hua Tian, Xin Hou, Mi-Hong Ge, Hongbin Xu +6 more
2022Parasites & Vectors23 citations Open access
Semantic Scholar
Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums
Wei-Shan Chang, J. Eden, W. Hartley, M. Shi +2 more
2019bioRxiv23 citations Open access
Semantic Scholar
Emergence of an ancient and pathogenic mammarenavirus
X. Luo, Shan Lu, Chuan Qin, M. Shi +23 more
2023Emerging Microbes and Infections21 citations Open access
Semantic Scholar
VirBot: an RNA viral contig detector for metagenomic data
Guo-Wei Chen, Xu-Bo Tang, M. Shi, Yan-Ni Sun
2023Bioinform.19 citations Open access
Semantic Scholar
Isolation and Identification of a Novel Phlebovirus, Hedi Virus, from Sandflies Collected in China
Ziqian Xu, Na Fan, X. Hou, Jing Wang +4 more
2021Viruses19 citations Open access
Semantic Scholar

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