K. Makarychev

Most-cited papers

Random access in large-scale DNA data storage
Lee Organick, S. D. Ang, Yuan-Jyue Chen, Randolph M. Lopez +18 more
2018Nature Biotechnology782 citations
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DNA assembly for nanopore data storage readout
Randolph M. Lopez, Yuan-Jyue Chen, Siena Dumas Ang, S. Yekhanin +5 more
2019Nature Communications132 citations Open access
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Clustering Billions of Reads for DNA Data Storage
Cyrus Rashtchian, K. Makarychev, Miklós Z. Rácz, S. D. Ang +4 more
2017Neural Information Processing Systems100 citations
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System Integration
J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing81 citations
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Singular-Value Decomposition (SVD)
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing76 citations
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Scaling up DNA data storage and random access retrieval
Douglas M. Carmean, L. Ceze, K. Strauss, S. D. Ang +18 more
2017bioRxiv47 citations
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Serial and parallel methods for i/o efficient suffix tree construction
Amol Ghoting, K. Makarychev
2009SIGMOD Conference37 citations
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Speed regularization and optimality in word classing
G. Zweig, K. Makarychev
2013IEEE International Conference on Acoustics, Speech, and Signal Processing31 citations
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Optimizing Large-scale Graph Analysis on Multithreaded, Multicore Platforms
Guo-Jing Cong, K. Makarychev
2011IEEE International Parallel and Distributed Processing Symposium31 citations
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Indexing genomic sequences on the IBM Blue Gene
Amol Ghoting, K. Makarychev
2009Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis28 citations
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Batch Optimization for DNA Synthesis
K. Makarychev, Miklós Z. Rácz, Cyrus Rashtchian, S. Yekhanin
2020IEEE Transactions on Information Theory22 citations Open access
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Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers
Philip C. Church, A. Goscinski, K. Holt, M. Inouye +3 more
2011Annual International Conference of the IEEE Engineering in Medicine and Biology Society15 citations
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Speedup
J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing9 citations
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Scalable Coherent Interface (SCI)
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing8 citations
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Suffix Trees
Amol Ghoting, K. Makarychev
2011Encyclopedia of Parallel Computing8 citations
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I/O efficient algorithms for serial and parallel suffix tree construction
Amol Ghoting, K. Makarychev
2010TODS8 citations
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Scalability
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing5 citations
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Spec Mpi2007
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing5 citations
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SNAP (Small-World Network Analysis and Partitioning) Framework
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing4 citations
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System on Chip (SoC)
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2006Encyclopedia of Parallel Computing4 citations
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Complex Semidefinite Programming Revisited and the Assembly of Circular Genomes
K. Makarychev, Alantha Newman
2011International Conference on Supercomputing3 citations
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Semaphores
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing3 citations
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Server Farm
J. Dongarra, P. Luszczek, F. Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing3 citations
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Spec Omp2001
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing2 citations
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Speculative Parallelization
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing2 citations
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Shared Virtual Memory
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing2 citations
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Erratum: Random access in large-scale DNA data storage
Lee Organick, S. D. Ang, Yuan-Jyue Chen, Randolph M. Lopez +18 more
2018Nature Biotechnology1 citations
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Systolic Architecture
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing1 citations
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Superlinear Speedup
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing1 citations
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Strong Scaling
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing1 citations
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Improving Memory Access Locality for Large-Scale Graph Analysis Applications
Guo-Jing Cong, K. Makarychev
2009Parallel and Distributed Computing and Communications Systems1 citations
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Batch Optimization for DNA Synthesis
K. Makarychev, Miklós Z. Rácz, Cyrus Rashtchian, Sergey Yekhanin
2021International Symposium on Information Theory0 citations
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Influence of the Discrete Nature of Non-Stackable Resources on the Adjustment of the Construction Projects Implementation Schedule
M. G. Dobrosotskikh, K. Makarychev
20200 citations
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sODA cOMMIttees Program committee chair
S. Khanna, Ashish Goel, K. Makarychev, K. Panagiotou +1 more
20120 citations
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Sse
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Software Autotuning
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Spec Hpc2002
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Scheduling
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Speculative Multithreading (SM)
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Simd Isa
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Speculative Thread-Level Parallelization
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Конструктивные пено и фибропенобетоны на воде с пониженной температурой затворения
Левон Рафаэлович Маилян, Александр Левонович Маилян, K. Makarychev
20110 citations
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Spec Hpc96
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Stalemate
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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SIMD Extensions
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Special-Purpose Machines
J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Switched-Medium Network
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Scan, Reduce and
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Shared Interconnect
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
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Small-World Network Analysis and Partitioning (SNAP) Framework
Jack J. Dongarra, P. Luszczek, Felix Wolf, J. Träff +53 more
2011Encyclopedia of Parallel Computing0 citations
Semantic Scholar