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Sarah J. Berkemer · SciRah

Researcher profile · Semantic Scholar

Sarah J. Berkemer

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Sarah J. Berkemer — researcher profile on SciRah

h-index: 7
Works: 25
Citations: 181

Most-cited papers

A New Analysis of Archaea–Bacteria Domain Separation: Variable Phylogenetic Distance and the Tempo of Early Evolution
Sarah J. Berkemer, S. McGlynn
2020Molecular biology and evolution48 citations Open access
Semantic Scholar
Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies
Cristian A. Velandia-Huerto, Sarah J. Berkemer, A. Hoffmann, Nancy Retzlaff +4 more
2016BMC Genomics26 citations Open access
Semantic Scholar
Identification of RNA 3´ ends and termination sites in Haloferax volcanii
Sarah J. Berkemer, Lisa-Katharina Maier, F. Amman, S. Bernhart +5 more
2020RNA Biology17 citations Open access
Semantic Scholar
The Thermosynechococcus Genus: Wide Environmental Distribution, but a Highly Conserved Genomic Core
Paula Prondzinsky, Sarah J. Berkemer, L. Ward, S. McGlynn
2020bioRxiv15 citations Open access
Semantic Scholar
Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea
T. S. Schwarz, Sarah J. Berkemer, S. Bernhart, M. Weiss +3 more
2020Frontiers in Microbiology14 citations Open access
Semantic Scholar
Algebraic Dynamic Programming on Trees
Sarah J. Berkemer, C. H. zu Siederdissen, P. Stadler
2017Algorithms9 citations Open access
Semantic Scholar
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis
Christiane Gärtner, Jörg Fallmann, Peter F. Stadler, Thorsten Kaiser +1 more
2023Journal of Personalized Medicine7 citations Open access
Semantic Scholar
Automated design of dynamic programming schemes for RNA folding with pseudoknots
B. Marchand, S. Will, Sarah J. Berkemer, Yann Ponty +1 more
2023Algorithms for Molecular Biology6 citations Open access
Semantic Scholar
Compositional Properties of Alignments
Sarah J. Berkemer, Christian Höner zu Siederdissen, P. Stadler
2020Mathematics and Computer Science6 citations Open access
Semantic Scholar
Processed Small RNAs in Archaea and BHB Elements
Sarah J. Berkemer, C. H. zu Siederdissen, F. Amman, Axel Wintsche +4 more
20156 citations Open access
Semantic Scholar
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem
S. Prohaska, Sarah J. Berkemer, Fabian Gärtner, Thomas Gatter +3 more
2017Journal of Mathematical Biology4 citations Open access
Semantic Scholar
SMORE: Synteny Modulator of Repetitive Elements
Sarah J. Berkemer, A. Hoffmann, Cameron R. A. Murray, P. Stadler
2017Life4 citations Open access
Semantic Scholar
Spiders can be Recognized by Counting Their Legs
Sarah J. Berkemer, Ricardo Régis Cavalcante Chaves, A. Fritz, Marc Hellmuth +2 more
2014Mathematics and Computer Science4 citations Open access
Semantic Scholar
Convexity Deficit of Benzenoids
N. Bašić, P. Fowler, Sara Sabrina Zemljič, P. Stadler +5 more
2020Croatica Chemica Acta3 citations Open access
Semantic Scholar
Street Name Data as a Reflection of Migration and Settlement History
Sarah J. Berkemer, P. Stadler
2020Urban Science3 citations Open access
Semantic Scholar
Alignments as Compositional Structures
Sarah J. Berkemer, C. H. zu Siederdissen, P. Stadler
2018arXiv.org3 citations
Semantic Scholar
Comparative Detection of Processed Small RNAs in Archaea
C. H. zu Siederdissen, Sarah J. Berkemer, F. Amman, Axel Wintsche +3 more
2014International Work-Conference on Bioinformatics and Biomedical Engineering3 citations
Semantic Scholar
Identification of RNA 3’ ends and termination sites in Haloferax volcanii
Sarah J. Berkemer, Lisa-Katharina Maier, F. Amman, S. Bernhart +5 more
20191 citations Open access
Semantic Scholar
Unbiased Map of Transcription Termination Sites in Haloferax volcanii reveals manifold termination patterns
Sarah J. Berkemer, Lisa-Katharina Maier, F. Amman, S. Bernhart +5 more
20191 citations Open access
Semantic Scholar
General Reforestation: Parsing Trees and Forests Efﬁcient Dynamic Programming on Tree-like Data Structures with ADPfusion
Sarah J. Berkemer
20161 citations
Semantic Scholar
Circular-pre-rRNA-dependent and -independent rRNA maturation pathways in Archaea.
D. Strauss, Maximilian Liebl, Pranav Sharma, Michael Jüttner +4 more
2026RNA: A publication of the RNA Society0 citations
Semantic Scholar
Algorithms for the Integrative Modeling of Viral RNA Architectures
Sarah J. Berkemer
20230 citations
Semantic Scholar
A Very Brief Review of Sequence Alignments
Sarah J. Berkemer, C. H. zu Siederdissen, F. Peter, Stadler
20190 citations
Semantic Scholar
Towards Dynamic Programming on Generalized Data Structures: and Applications of Dynamic Programming in Bioinformatics
Sarah J. Berkemer
20190 citations
Semantic Scholar
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem
S. Prohaska, Sarah J. Berkemer, Fabian Gärtner, Thomas Gatter +3 more
2017Journal of Mathematical Biology0 citations Open access
Semantic Scholar

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