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A. Bartschat · SciRah

Researcher profile · Semantic Scholar

A. Bartschat

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A. Bartschat — researcher profile on SciRah

h-index: 14
Works: 40
Citations: 560

Most-cited papers

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks
J. Stegmaier, J. Otte, A. Kobitski, A. Bartschat +4 more
2014PLoS ONE96 citations Open access
Semantic Scholar
XPIWIT - an XML pipeline wrapper for the Insight Toolkit
A. Bartschat, Eduard Hübner, M. Reischl, R. Mikut +1 more
2015Bioinform.46 citations Open access
Semantic Scholar
3D confocal laser-scanning microscopy for large-area imaging of the corneal subbasal nerve plexus
Stephan Allgeier, A. Bartschat, S. Bohn, S. Peschel +7 more
2018Scientific Reports38 citations Open access
Semantic Scholar
Cellular in vivo 3D imaging of the cornea by confocal laser scanning microscopy.
S. Bohn, K. Sperlich, Stephan Allgeier, A. Bartschat +7 more
2018Biomedical Optics Express38 citations Open access
Semantic Scholar
Inherently UV Photodegradable Poly(methacrylate) Gels
J. Scheiger, Shuai Li, Marius Brehm, A. Bartschat +2 more
2021Advanced Functional Materials33 citations Open access
Semantic Scholar
EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos
Benjamin Schott, Manuel Traub, C. Schlagenhauf, Masanari Takamiya +10 more
2018PLoS Comput. Biol.32 citations Open access
Semantic Scholar
The MATLAB Toolbox SciXMiner: User's Manual and Programmer's Guide
R. Mikut, A. Bartschat, Wolfgang Doneit, J. Á. G. Ordiano +4 more
2017arXiv.org32 citations
Semantic Scholar
pyWATTS: Python Workflow Automation Tool for Time Series
Benedikt Heidrich, A. Bartschat, M. Turowski, Oliver Neumann +6 more
2021arXiv.org23 citations
Semantic Scholar
Cell segmentation in 3D confocal images using supervoxel merge-forests with CNN-based hypothesis selection
J. Stegmaier, T. V. Spina, A. Falcão, A. Bartschat +3 more
2017IEEE International Symposium on Biomedical Imaging22 citations Open access
Semantic Scholar
Real-time large-area imaging of the corneal subbasal nerve plexus
Stephan Allgeier, A. Bartschat, S. Bohn, Rudolf F. Guthoff +8 more
2022Scientific Reports19 citations Open access
Semantic Scholar
Wide-field mosaics of the corneal subbasal nerve plexus in Parkinson’s disease using in vivo confocal microscopy
R. A. Badian, Stephan Allgeier, F. Scarpa, Mattias Andréasson +8 more
2021Scientific Data19 citations Open access
Semantic Scholar
Parkinson’s disease with restless legs syndrome—an in vivo corneal confocal microscopy study
Mattias Andréasson, N. Lagali, R. A. Badian, T. Utheim +12 more
2021npj Parkinson's Disease19 citations Open access
Semantic Scholar
Data mining tools
A. Bartschat, M. Reischl, R. Mikut
2019WIREs Data Mining Knowl. Discov.19 citations
Semantic Scholar
Burst of Corneal Dendritic Cells during Trastuzumab and Paclitaxel Treatment
K. Sterenczak, N. Stache, S. Bohn, Stephan Allgeier +6 more
2021Diagnostics15 citations Open access
Semantic Scholar
Influence of Synthetic Label Image Object Properties on GAN Supported Segmentation Pipelines
Moritz Böhland, Tim Scherr, A. Bartschat, R. Mikut +1 more
2018Proceedings13 citations Open access
Semantic Scholar
Concept and benchmark results for Big Data energy forecasting based on Apache Spark
Jorge Ángel González Ordiano, A. Bartschat, Nicole Ludwig, Eric Braun +6 more
2018Journal of Big Data13 citations Open access
Semantic Scholar
Best Practices in Deep Learning-Based Segmentation of Microscopy Images
Tim Scherr, A. Bartschat, M. Reischl, Johanndes Stegmaier +1 more
2018Proceedings12 citations Open access
Semantic Scholar
Mosaic vs. Single Image Analysis with Confocal Microscopy of the Corneal Nerve Plexus for Diagnosis of Early Diabetic Peripheral Neuropathy
Aleksandra Matuszewska-Iwanicka, B. Stratmann, O. Stachs, Stephan Allgeier +5 more
2022Ophthalmology and Therapy10 citations Open access
Semantic Scholar
In Vivo Monitoring of Corneal Dendritic Cells in the Subbasal Nerve Plexus during Trastuzumab and Paclitaxel Breast Cancer Therapy—A One-Year Follow-Up
S. Bohn, N. Stache, K. Sperlich, Stephan Allgeier +8 more
2022Diagnostics9 citations Open access
Semantic Scholar
Assessment of dynamic corneal nerve changes using static landmarks by in vivo large-area confocal microscopy—a longitudinal proof-of-concept study
N. Stache, K. Sterenczak, K. Sperlich, C. Marfurt +9 more
2022Quantitative Imaging in Medicine and Surgery6 citations Open access
Semantic Scholar
BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images
Tim Scherr, Karolin Streule, A. Bartschat, Moritz Böhland +4 more
2020Bioinform.6 citations Open access
Semantic Scholar
Towards DeepSpray: Using Convolutional Neural Network to post-process Shadowgraphy Images of Liquid Atomization
G. Chaussonnet, Christian Lieber, Yikang Yan, Wenda Gu +5 more
2019arXiv.org6 citations Open access
Semantic Scholar
Automatic corneal tissue classification using bag-of-visual-words approaches
A. Bartschat, L. Toso, J. Stegmaier, Arjan Kuijper +3 more
20165 citations
Semantic Scholar
Automated Classification of Fertilized Zebrafish Embryos
Alexander Neukum, A. Bartschat, H. Breitwieser, U. Strähle +2 more
2019Zebrafish4 citations
Semantic Scholar
Transfer Learning with Human Corneal Tissues: An Analysis of Optimal Cut-Off Layer
Nadezhda Prodanova, J. Stegmaier, Stephan Allgeier, S. Bohn +4 more
2018arXiv.org4 citations
Semantic Scholar
Augmentations of the Bag of Visual Words Approach for Real-Time Fuzzy and Partial Image Classification
A. Bartschat, J. Stegmaier, Stephan Allgeier, K. Reichert +4 more
20174 citations
Semantic Scholar
[In vivo imaging of the corneal nerve plexus : From single image to large scale map].
B. Köhler, Stephan Allgeier, A. Bartschat, R. Guthoff +5 more
2017Der Ophthalmologe4 citations
Semantic Scholar
Segregation of Dispersed Silica Nanoparticles in Microfluidic Water‐in‐Oil Droplets: A Kinetic Study
Sahana Sheshachala, Maximilian Grösche, Tim Scherr, Yong Hu +4 more
2020ChemPhysChem3 citations Open access
Semantic Scholar
Motion prediction enables simulated MR-imaging of freely moving model organisms
M. Reischl, M. Jouda, N. MacKinnon, E. Fuhrer +4 more
2019bioRxiv2 citations Open access
Semantic Scholar
Fuzzy tissue detection for real-time focal control in corneal confocal microscopy
A. Bartschat, Stephan Allgeier, Tim Scherr, J. Stegmaier +7 more
2019at - Automatisierungstechnik2 citations
Semantic Scholar
Robustness of Deep Learning Architectures with Respect to Training Data Variation
A. Bartschat, Tim Unger, Tim Scherr, J. Stegmaier +2 more
2018Proceedings2 citations Open access
Semantic Scholar
ZebrafishMiner: an open source software for interactive evaluation of domain-specific fluorescence in zebrafish
M. Reischl, A. Bartschat, U. Liebel, Jochen Gehrig +2 more
20172 citations Open access
Semantic Scholar
Slit lamp microscopy on a cellular level using in vivo confocal laser scanning microscopy
S. Bohn, K. Sperlich, R. K. Prakasam, Stephan Allgeier +7 more
20181 citations
Semantic Scholar
Evaluation of Features for Change Detection in Unstructured Image Data
Friedrich Rieken Münke, A. Bartschat, Yujing Chen, R. Mikut +1 more
2018Proceedings1 citations Open access
Semantic Scholar
Concepts for automated fast focal plane control in subbasal nerve plexus mosaicking to reliably quantify a biomarker for diabetic peripheral neuropathy
S. Bohn, Stephan Allgeier, A. Bartschat, Rudolf R. Guthoff +6 more
20171 citations
Semantic Scholar
Applanation force monitoring during in vivo corneal confocal laser scanning microscopy [in press]
S. Bohn, K. Sperlich, A. Bartschat, Heinrich Stolu +4 more
20190 citations
Semantic Scholar
Analysis of focus shift speed for in vivo 3D corneal confocal microscopy
Stephan Allgeier, A. Bartschat, S. Bohn, K. Reichert +4 more
20180 citations Open access
Semantic Scholar
Interactive analysis of cell tracks in light sheet microscopy images using embryominer
Tim Scherr, Benjamin Schott, Manuel Traub, Masanari Takamiya +6 more
20180 citations
Semantic Scholar
Automatic Classification of Cornea Tissues for Autofocus Algorithm
A. Bartschat
20160 citations
Semantic Scholar
Efficient extraction of cell shapes and nuclei from 3D light-sheet microscopy images
J. Stegmaier, F. Amat, Masanari Takamiya, A. Bartschat +9 more
20140 citations
Semantic Scholar

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