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Lingling Zheng · SciRah

Researcher profile · Semantic Scholar

Lingling Zheng

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Lingling Zheng — researcher profile on SciRah

h-index: 22
Works: 36
Citations: 2,119

Most-cited papers

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data
Ke-Ren Zhou, Shun Liu, Wenju Sun, Lingling Zheng +3 more
2016Nucleic Acids Res.378 citations Open access
Semantic Scholar
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data
Jia-Jia Xuan, Wenju Sun, Peng-Hui Lin, Ke-Ren Zhou +4 more
2017Nucleic Acids Res.356 citations Open access
Semantic Scholar
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
Lingling Zheng, Junhao Li, Jiezong Wu, Wenju Sun +5 more
2015Nucleic Acids Res.206 citations Open access
Semantic Scholar
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers
Lingling Zheng, Wei-Lin Xu, Shun Liu, Wenju Sun +4 more
2016Nucleic Acids Res.129 citations Open access
Semantic Scholar
Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development
Shu-juan Xie, Junhao Li, Hua-Feng Chen, Ye-Ya Tan +11 more
2018Cell Death and Differentiation107 citations Open access
Semantic Scholar
Discovery of Protein–lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets
Junhao Li, Shun Liu, Lingling Zheng, Jiezong Wu +5 more
2015Frontiers in Bioengineering and Biotechnology82 citations Open access
Semantic Scholar
miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways
Lu-Qin Wang, Peng Yu, Bin Li, Yan-Hua Guo +8 more
2018Molecular Oncology67 citations Open access
Semantic Scholar
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes
Jun-Hong Huang, Wu-Jian Zheng, Ping Zhang, Q. Lin +11 more
2022Nucleic Acids Res.64 citations Open access
Semantic Scholar
Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei
Yanzi Wen, Lingling Zheng, Jian-You Liao, Ming-hui Wang +5 more
2011Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data
Junhao Wang, Wen-Xin Chen, Shi-qiang Mei, Yue-Dong Yang +3 more
2021Nucleic Acids Res.61 citations Open access
Semantic Scholar
Application of microRNA gene resources in the improvement of agronomic traits in rice.
Lingling Zheng, L. Qu
2015Plant Biotechnology Journal54 citations Open access
Semantic Scholar
Pseudogenes are not pseudo any more
Yanzi Wen, Lingling Zheng, L. Qu, F. Ayala +1 more
2012RNA Biology52 citations Open access
Semantic Scholar
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data
Fangzhou Xie, Shu-Rong Liu, Junhao Wang, Jia-Jia Xuan +4 more
2020Nucleic Acids Res.49 citations Open access
Semantic Scholar
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease
Lingling Zheng, Ke-Ren Zhou, Shun Liu, Ding Zhang +4 more
2017Nucleic Acids Res.47 citations Open access
Semantic Scholar
Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia
Jian-You Liao, Yan-Hua Guo, Lingling Zheng, Yan Li +6 more
2014Proceedings of the National Academy of Sciences of the United States of America44 citations Open access
Semantic Scholar
Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
Peng Shao, Jian-You Liao, Dao-Gang Guan, Jian-Hua Yang +4 more
2012RNA Biology40 citations Open access
Semantic Scholar
Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii
Zhao-Rong Lun, De-Hua Lai, Yanzi Wen, Lingling Zheng +6 more
2015Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data
Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun +4 more
2022Nucleic Acids Res.30 citations Open access
Semantic Scholar
Cryptotanshinone suppresses key onco-proliferative and drug-resistant pathways of chronic myeloid leukemia by targeting STAT5 and STAT3 phosphorylation
Bowen Dong, Zirui Liang, Zhi-Rong Chen, Bin Li +4 more
2018Science China Life Sciences30 citations
Semantic Scholar
Rapid Birth-and-Death Evolution of Imprinted snoRNAs in the Prader-Willi Syndrome Locus: Implications for Neural Development in Euarchontoglires
Yi-Jun Zhang, Jian-Hua Yang, Qiaolan Shi, Lingling Zheng +4 more
2014PLoS ONE30 citations Open access
Semantic Scholar
Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen
Ruo-Hong Lin, De-Hua Lai, Lingling Zheng, Jie Wu +3 more
2015Parasites & Vectors24 citations Open access
Semantic Scholar
SARS-CoV-2 causes a significant stress response mediated by small RNAs in the blood of COVID-19 patients
Xi Liu, Yanzi Wen, Zichao Huang, Xia Shen +8 more
2021Molecular Therapy: Nucleic Acids23 citations Open access
Semantic Scholar
Computational Approaches to tRNA-Derived Small RNAs
Wei-Lin Xu, Yexin Yang, Yi-Dan Wang, L. Qu +1 more
2017Non-Coding RNA22 citations Open access
Semantic Scholar
ColorCells: a database of expression, classification and functions of lncRNAs in single cells
Lingling Zheng, Jing Xiong, Wu-Jian Zheng, Junhao Wang +9 more
2020Briefings Bioinform.21 citations
Semantic Scholar
PERK Signaling Controls Myoblast Differentiation by Regulating MicroRNA Networks
Ye-Ya Tan, Yin Zhang, Bin Li, Yangliu Ou +6 more
2021Frontiers in Cell and Developmental Biology18 citations Open access
Semantic Scholar
Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei
Lingling Zheng, Yanzi Wen, Jian-Hua Yang, Jian-You Liao +7 more
2013RNA: A publication of the RNA Society17 citations Open access
Semantic Scholar
Erratum to: Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen
Ruo-Hong Lin, De-Hua Lai, Lingling Zheng, Jie Wu +3 more
2016Parasites & Vectors14 citations Open access
Semantic Scholar
The functional analysis of transiently upregulated miR-101 suggests a “braking” regulatory mechanism during myogenesis
Shu-Rong Liu, Shu-juan Xie, Hua-Feng Chen, Bin Li +7 more
2021Science China Life Sciences13 citations
Semantic Scholar
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs
Li Cai, Jia-Jia Xuan, Q. Lin, Junhao Wang +6 more
2021Nucleic Acids Res.11 citations Open access
Semantic Scholar
N-methyladenine demethylase ALKBH1 inhibits the differentiation of skeletal muscle.
Li-Ting Diao, Shu-juan Xie, Pei Yu, Yu-Jia Sun +7 more
2021Experimental Cell Research11 citations
Semantic Scholar
A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources
Jun-Zhi Wen, Jian-You Liao, Lingling Zheng, Hui Xu +5 more
2014PLoS ONE10 citations Open access
Semantic Scholar
Computational RNomics: Structure identification and functional prediction of non-coding RNAs in silico
Lingling Zheng, Liang-Hu Qu
2010Science China Life Sciences9 citations
Semantic Scholar
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs
Lingling Zheng, Kai Deng, An-Cheng Deng, Jiezong Wu +3 more
2017Frontiers in Microbiology8 citations Open access
Semantic Scholar
Chinese RNA research leading to the international science and technology frontier
Lingling Zheng, Yi-Jun Qi, Liang-Hu Qu
20192 citations
Semantic Scholar
Integrative Transcriptomic and Functional Analysis Reveals Fatty Acyl Elongases Involved in Sex Pheromone Biosynthesis in Rice Leaffolder, Cnaphalocrocis medinalis (Lepidoptera: Pyraloidea)
Ling Chen, Xiaodong Lin, Ke-xin Wang, Xiao Feng +4 more
2026bioRxiv0 citations
Semantic Scholar
Different Types of Small RNAs in Protozoa
Lingling Zheng, Jian-You Liao, Yanzi Wen, G. Hide +2 more
20160 citations Open access
Semantic Scholar

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