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Michele Donato · SciRah

Researcher profile · Semantic Scholar

Michele Donato

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Michele Donato — researcher profile on SciRah

h-index: 23
Works: 63
Citations: 2,658

Most-cited papers

Unsupervised analysis of transcriptomics in bacterial sepsis across multiple datasets reveals three robust clusters
T. Sweeney, T. Azad, Michele Donato, Winston A. Haynes +19 more
2018Critical Care Medicine327 citations Open access
Semantic Scholar
SINGLE-CELL CHROMATIN MODIFICATION PROFILING REVEALS INCREASED EPIGENETIC VARIATIONS WITH AGING
Peggie Cheung, Francesco Vallania, H. Warsinske, Michele Donato +8 more
2018Cell309 citations Open access
Semantic Scholar
The immunoregulatory landscape of human tuberculosis granulomas
E. Mccaffrey, Michele Donato, L. Keren, Zhenghao Chen +24 more
2022Nature Immunology272 citations Open access
Semantic Scholar
The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination
Florian Wimmers, Michele Donato, Alex J. Kuo, T. Ashuach +19 more
2021Cell250 citations Open access
Semantic Scholar
Methods and approaches in the topology-based analysis of biological pathways
C. Mitrea, Zeinab Taghavi, Behzad Bokanizad, S. Hanoudi +4 more
2013Frontiers in Physiology215 citations Open access
Semantic Scholar
Analysis and correction of crosstalk effects in pathway analysis
Michele Donato, Zhong-Hui Xu, A. Tomoiaga, J. Granneman +6 more
2013Genome Research148 citations Open access
Semantic Scholar
Cellular senescence impairs the reversibility of pulmonary arterial hypertension
D. E. van der Feen, Guido P. L. Bossers, Q. Hagdorn, J. Moonen +16 more
2020Science Translational Medicine123 citations Open access
Semantic Scholar
Macrophage-derived IL-6 trans-signalling as a novel target in the pathogenesis of bronchopulmonary dysplasia
D. Hirani, C. Alvira, Soula Danopoulos, C. Milla +19 more
2021European Respiratory Journal118 citations Open access
Semantic Scholar
A novel computational approach for drug repurposing using systems biology
Azam Peyvandi-Pour, Nafiseh Saberian, Adib Shafi, Michele Donato +1 more
2018Bioinform.99 citations Open access
Semantic Scholar
Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses
Hong Zheng, Aditya M. Rao, Denis Dermadi, J. Toh +13 more
2021Immunity62 citations Open access
Semantic Scholar
REPRESSION OF CTSG, ELANE, AND PRTN3-MEDIATED HISTONE H3 PROTEOLYTIC CLEAVAGE PROMOTES MONOCYTE-TO-MACROPHAGE DIFFERENTIATION
Peggie Cheung, S. Schaffert, S. Chang, Mai Dvorak +16 more
2021Nature Immunology62 citations Open access
Semantic Scholar
Rapid GPR183-mediated recruitment of eosinophils to the lung after Mycobacterium tuberculosis infection
Andrea C. Bohrer, Ehydel Castro, Claire E. Tocheny, Maike Assmann +26 more
2022bioRxiv48 citations Open access
Semantic Scholar
Extracellular Vesicle Capture by AnTibody of CHoice and Enzymatic Release (EV‐CATCHER): A customizable purification assay designed for small‐RNA biomarker identification and evaluation of circulating small‐EVs
M. Mitchell, I. Ben-Dov, Christina Liu, Kenny Q. Ye +13 more
2021Journal of Extracellular Vesicles47 citations Open access
Semantic Scholar
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria
Maureen C. Ty, Sheng-Huan Sun, Perri C. Callaway, J. Rek +27 more
2023Science Translational Medicine45 citations Open access
Semantic Scholar
A new computational drug repurposing method using established disease-drug pair knowledge
Nafiseh Saberian, Azam Peyvandi-Pour, Michele Donato, S. Ansari +1 more
2019Bioinform.41 citations Open access
Semantic Scholar
iPSC-endothelial cell phenotypic drug screening and in silico analyses identify tyrphostin AG1296 for pulmonary arterial hypertension
Mingxia Gu, Michele Donato, M. Guo, Neil Wary +9 more
2021Science Translational Medicine40 citations Open access
Semantic Scholar
FHIT, a Novel Modifier Gene in Pulmonary Arterial Hypertension
Svenja Dannewitz Prosseda, Xue-Fei Tian, K. Kuramoto, M. Boehm +15 more
2019American Journal of Respiratory and Critical Care Medicine40 citations Open access
Semantic Scholar
Incorporating Gene Significance in the Impact Analysis of Signaling Pathways
Călin Voichiţa, Michele Donato, S. Drăghici
2012International Conference on Machine Learning and Applications38 citations
Semantic Scholar
Inflammatory macrophage-associated 3-gene signature predicts subclinical allograft injury and graft survival.
T. Azad, Michele Donato, L. Heylen, Andrew Liu +5 more
2018JCI Insight34 citations Open access
Semantic Scholar
SINGLE-CELL EPIGENETICS – CHROMATIN MODIFICATION ATLAS UNVEILED BY MASS CYTOMETRY
Peggie Cheung, Francesco Vallania, Mai Dvorak, S. Chang +7 more
2018Clinical Immunology34 citations Open access
Semantic Scholar
A novel bi-level meta-analysis approach: applied to biological pathway analysis
Tin Chi Nguyen, R. Tagett, Michele Donato, C. Mitrea +1 more
2016Bioinform.29 citations Open access
Semantic Scholar
An 8-gene machine learning model improves clinical prediction of severe dengue progression
Yi-Ran E. Liu, Sirle Saul, Aditya M. Rao, Makeda L. Robinson +17 more
2022Genome Medicine28 citations Open access
Semantic Scholar
Cross-Clustering: A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters
P. Tellaroli, Marco Bazzi, Michele Donato, A. Brazzale +1 more
2016PLoS ONE28 citations Open access
Semantic Scholar
Characterising the autoantibody repertoire in systemic sclerosis following myeloablative haematopoietic stem cell transplantation
B. Ayoglu, Michele Donato, D. Furst, L. Crofford +14 more
2023Annals of the Rheumatic Diseases20 citations Open access
Semantic Scholar
Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood
E. Mccaffrey, Michele Donato, L. Keren, Zhenghao Chen +16 more
2020bioRxiv19 citations Open access
Semantic Scholar
Comparison of the Transcriptomic Signatures in Pediatric and Adult CML
M. Youn, Stephanie M. Smith, Alex G. Lee, H. Chae +25 more
2021Cancers18 citations Open access
Semantic Scholar
A 6-mRNA host response classifier in whole blood predicts outcomes in COVID-19 and other acute viral infections
L. Buturovic, Hong Zheng, Benjamin Tang, Kevin Lai +28 more
2022Scientific Reports17 citations Open access
Semantic Scholar
A novel pathway analysis approach based on the unexplained disregulation of genes
S. Ansari, Călin Voichiţa, Michele Donato, R. Tagett +1 more
2016Proceedings of the IEEE17 citations Open access
Semantic Scholar
MICRORNA-AUGMENTED PATHWAYS (mirAP) AND THEIR APPLICATIONS TO PATHWAY ANALYSIS AND DISEASE SUBTYPING
D. Diaz, Michele Donato, Tin Nguyen, S. Drăghici
2017Pacific Symposium on Biocomputing14 citations Open access
Semantic Scholar
Ancestry-based differences in the immune phenotype are associated with lupus activity
S. Slight-Webb, K. Thomas, Miles Smith, C. Wagner +22 more
2023JCI Insight13 citations Open access
Semantic Scholar
Cytokine signatures differentiate systemic sclerosis patients at high versus low risk for pulmonary arterial hypertension
K. Kolstad, Avani Khatri, Michele Donato, S. Chang +5 more
2022Arthritis Research & Therapy11 citations Open access
Semantic Scholar
Mass-Cytometry-Based Quantification of Global Histone Post-Translational Modifications at Single-Cell Resolution Across Peripheral Immune Cells in IBD
Lawrence Bai, Denis Dermadi, Laurynas Kalesinskas, Mai Dvorak +9 more
2022Journal of Crohn's & Colitis10 citations Open access
Semantic Scholar
Clinical immunity to malaria involves epigenetic reprogramming of innate immune cells
Jason Nideffer, Maureen C. Ty, Michele Donato, Rek John +15 more
2024PNAS Nexus8 citations Open access
Semantic Scholar
A systems biology approach for the identification of significantly perturbed genes
Adib Shafi, Michele Donato, S. Drăghici
2015ACM International Conference on Bioinformatics, Computational Biology and Biomedicine8 citations
Semantic Scholar
A 6-mRNA host response whole-blood classifier trained using patients with non-COVID-19 viral infections accurately predicts severity of COVID-19
L. Buturovic, Hong Zheng, Benjamin Tang, Kevin Lai +28 more
2020medRxiv7 citations Open access
Semantic Scholar
An approach to infer putative disease‐specific mechanisms using neighboring gene networks
S. Ansari, Michele Donato, Nafiseh Saberian, S. Drăghici
2017Bioinform.7 citations Open access
Semantic Scholar
Pathway crosstalk effects: Shrinkage and disentanglement using a Bayesian hierarchical model
A. Tomoiaga, P. Westfall, Michele Donato, S. Drăghici +3 more
2016Statistics in Biosciences6 citations Open access
Semantic Scholar
Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity irrespective of virus
Hong Zheng, Aditya M. Rao, Denis Dermadi, J. Toh +11 more
2020medRxiv5 citations Open access
Semantic Scholar
Comparison of the Transcriptomic Signature of Pediatric Vs. Adult CML and Normal Bone Marrow Stem Cells
H. Chae, Lara C. Murphy, Michele Donato, Alex G. Lee +18 more
2018Blood5 citations
Semantic Scholar
A genetic algorithms framework for estimating individual gene contributions in signaling pathways
Călin Voichiţa, Michele Donato, S. Drăghici
2013IEEE Congress on Evolutionary Computation5 citations
Semantic Scholar
A method for analysis and correction of cross-talk effects in pathway analysis
Michele Donato, S. Drăghici, A. Tomoiaga, P. Westfall +2 more
2012IEEE International Joint Conference on Neural Network5 citations
Semantic Scholar
Signaling pathways coupling phenomena
Michele Donato, S. Drăghici
2010IEEE International Joint Conference on Neural Network5 citations
Semantic Scholar
Systems immunology of transcriptional responses to viral infection identifies conserved antiviral pathways across macaques and humans
K. Ratnasiri, Hong Zheng, J. Toh, Zhi-Yuan Yao +14 more
2023bioRxiv4 citations Open access
Semantic Scholar
Disease Tolerance Acquired Through Repeated Plasmodium Infection Involves Epigenetic Reprogramming of Innate Immune Cells
Jason Nideffer, Maureen C. Ty, Michele Donato, Rek John +14 more
2023bioRxiv4 citations Open access
Semantic Scholar
Author Correction: The immunoregulatory landscape of human tuberculosis granulomas
E. Mccaffrey, Michele Donato, L. Keren, Zhenghao Chen +24 more
2022Nature Immunology4 citations Open access
Semantic Scholar
Identifying biologically relevant putative mechanisms in a given phenotype comparison
S. Hanoudi, Michele Donato, S. Drăghici
2017PLoS ONE4 citations Open access
Semantic Scholar
Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis
M. D. Sorbo, W. Balzano, Michele Donato, S. Drăghici
2013Biosyst.3 citations
Semantic Scholar
Crosstalk of Histone Modifications in the Healthy Human Immune System
Denis Dermadi, Laurynas Kalesinskas, A. Ganesan, Alex J. Kuo +8 more
2022bioRxiv2 citations Open access
Semantic Scholar
Inferring direction of associations between histone modifications using a neural processes-based framework
A. Ganesan, Denis Dermadi, Laurynas Kalesinskas, Michele Donato +3 more
2022iScience2 citations Open access
Semantic Scholar
Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans
Florian Wimmers, Michele Donato, Alex J. Kuo, T. Ashuach +19 more
2021medRxiv2 citations Open access
Semantic Scholar

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Peggie Cheung×8
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