Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Ze-Xian Zeng · SciRah

Researcher profile · Semantic Scholar

Ze-Xian Zeng

Share profile

Ze-Xian Zeng — researcher profile on SciRah

h-index: 26
Works: 94
Citations: 8,435

Most-cited papers

TIMER2.0 for analysis of tumor-infiltrating immune cells
Tai-Wen Li, Jing-Xin Fu, Ze-Xian Zeng, D. Cohen +4 more
2020Nucleic Acids Res.4,445 citations Open access
Semantic Scholar
Transfer learning enables predictions in network biology
C. Theodoris, Ling Xiao, Anant Chopra, M. Chaffin +7 more
2023Nature1,338 citations Open access
Semantic Scholar
Tumor aerobic glycolysis confers immune evasion through modulating sensitivity to T cell-mediated bystander killing via TNF-α.
Li-Jian Wu, Yiteng Jin, Xi Zhao, Kaiyang Tang +9 more
2023Cell Metabolism264 citations Open access
Semantic Scholar
Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade
S. Gu, Wubing Zhang, Xiao-Qing Wang, Peng Jiang +29 more
2021Cancer Discovery193 citations Open access
Semantic Scholar
Natural Language Processing for EHR-Based Computational Phenotyping
Ze-Xian Zeng, Yu Deng, Xiaoyu Li, Tristan Naumann +1 more
2018IEEE/ACM Transactions on Computational Biology & Bioinformatics182 citations Open access
Semantic Scholar
Statistical and machine learning methods for spatially resolved transcriptomics data analysis
Ze-Xian Zeng, Yawei Li, Yi-Ming Li, Yuan Luo
2022Genome Biology181 citations Open access
Semantic Scholar
Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review
Yuan Luo, W. Thompson, T. M. Herr, Ze-Xian Zeng +4 more
2017Drug Safety181 citations
Semantic Scholar
In Vivo CRISPR Screens Identify E3 Ligase Cop1 as a Modulator of Macrophage Infiltration and Cancer Immunotherapy Target
Xiao-Qing Wang, C. Tokheim, S. Gu, Binbin Wang +18 more
2021Cell180 citations Open access
Semantic Scholar
TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response
Ze-Xian Zeng, Cheryl J. Wong, Lin Yang, Nofal Ouardaoui +16 more
2021Nucleic Acids Res.125 citations Open access
Semantic Scholar
TIMER3: an enhanced resource for tumor immune analysis
Hao Cui, Guile Zhao, Yi-Wen Lu, Si-bo Zuo +7 more
2025Nucleic Acids Research117 citations Open access
Semantic Scholar
Early prediction of acute kidney injury following ICU admission using a multivariate panel of physiological measurements
Lindsay P. Zimmerman, P. Reyfman, Angela D. R. Smith, Ze-Xian Zeng +3 more
2019BMC Medical Informatics and Decision Making99 citations Open access
Semantic Scholar
Pre-existing tumor-resident T cells with cytotoxic potential associate with response to neoadjuvant anti-PD-1 in head and neck cancer
Giacomo Oliveira, A. Egloff, Alexander B. Afeyan, J. Wolff +35 more
2023Science immunology96 citations
Semantic Scholar
Using natural language processing and machine learning to identify breast cancer local recurrence
Ze-Xian Zeng, Sasa Espino, Ankita Roy, Xiaoyu Li +5 more
2018BMC Bioinformatics88 citations Open access
Semantic Scholar
Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors
Peng-Fei Ren, Rui Zhang, Yunfeng Wang, Peng Zhang +15 more
2025Nature Communications85 citations Open access
Semantic Scholar
CARM1 Inhibition Enables Immunotherapy of Resistant Tumors by Dual Action on Tumor cells and T cells
Sushil Kumar, Ze-Xian Zeng, A. Bagati, Rong-En Tay +18 more
2021Cancer Discovery76 citations Open access
Semantic Scholar
Identifying Breast Cancer Distant Recurrences from Electronic Health Records Using Machine Learning
Ze-Xian Zeng, Liang Yao, Ankita Roy, Xiaoyu Li +4 more
2019Journal of Healthcare Informatics Research51 citations Open access
Semantic Scholar
Deep learning for cancer type classification and driver gene identification
Ze-Xian Zeng, Chengsheng Mao, Andy H. Vo, Xiaoyu Li +4 more
2021BMC Bioinformatics50 citations Open access
Semantic Scholar
Checkpoint blockade-induced CD8+ T cell differentiation in head and neck cancer responders
Liye Zhou, Ze-Xian Zeng, A. Egloff, Fan Zhang +20 more
2022Journal for ImmunoTherapy of Cancer41 citations Open access
Semantic Scholar
Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation
Wubing Zhang, Shourya S. Roy Burman, Jiaye Chen, K. Donovan +10 more
2021bioRxiv41 citations Open access
Semantic Scholar
Discovering causal interactions using Bayesian network scoring and information gain
Ze-Xian Zeng, Xia Jiang, Richard E. Neapolitan
2016BMC Bioinformatics41 citations Open access
Semantic Scholar
Deep Generative Classifiers for Thoracic Disease Diagnosis with Chest X-ray Images
Chengsheng Mao, Yiheng Pan, Ze-Xian Zeng, Liang Yao +1 more
2018IEEE International Conference on Bioinformatics and Biomedicine36 citations Open access
Semantic Scholar
Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells.
Ce Luo, Rui Zhang, Rui Guo, Lijian Wu +17 more
2025Immunity34 citations Open access
Semantic Scholar
Cancer classification and pathway discovery using nonnegative matrix factorization
Ze-Xian Zeng, Andy H. Vo, Chengsheng Mao, S. Clare +2 more
2018Journal of Biomedical Informatics32 citations Open access
Semantic Scholar
Selective Progesterone Receptor Modulators in Early-Stage Breast Cancer: A Randomized, Placebo-Controlled Phase II Window-of-Opportunity Trial Using Telapristone Acetate
O. Lee, M. Sullivan, Yan-Fei Xu, C. Rogers +13 more
2019Clinical Cancer Research31 citations
Semantic Scholar
Potentiating anti-tumor immunity by re-engaging immune synapse molecules
Xindi Zhou, Tian Xu, Changhe Li, Yufeng He +8 more
2025Cell Reports Medicine28 citations Open access
Semantic Scholar
Discovery of targets for immune-metabolic antitumor drugs identifies Estrogen Related Receptor Alpha
A. Sahu, Xiao-Man Wang, P. Munson, J. Klomp +28 more
2023Cancer Discovery26 citations Open access
Semantic Scholar
Contralateral Breast Cancer Event Detection Using Nature Language Processing
Ze-Xian Zeng, Xiaoyu Li, Sasa Espino, Ankita Roy +4 more
2017American Medical Informatics Association Annual Symposium24 citations
Semantic Scholar
MetaTiME integrates single-cell gene expression to characterize the meta-components of the tumor immune microenvironment
Yi Zhang, Guanjue Xiang, A. Jiang, Allen W. Lynch +11 more
2023Nature Communications23 citations Open access
Semantic Scholar
Machine learning on syngeneic mouse tumor profiles to model clinical immunotherapy response
Ze-Xian Zeng, S. Gu, Cheryl J. Wong, Lin Yang +5 more
2022Science Advances23 citations Open access
Semantic Scholar
Clonal tracing reveals diverse patterns of response to immune checkpoint blockade
S. Gu, Xiao-Qing Wang, Xi-Hao Hu, Peng Jiang +22 more
2020Genome Biology23 citations Open access
Semantic Scholar
Sialylated IgG in epithelial cancers inhibits antitumor function of T cells via Siglec‐7
Tianrui Fan, Qin-Yuan Liao, Yang Zhao, Hui Dai +8 more
2022Cancer Science21 citations Open access
Semantic Scholar
Hippo signaling pathway regulates cancer cell-intrinsic MHC-II expression.
Ze-Xian Zeng, S. Gu, Nofal Ouardaoui, Carly C. Tymm +10 more
2022Cancer immunology research20 citations Open access
Semantic Scholar
Progesterone receptor antagonists reverse stem cell expansion and the paracrine effectors of progesterone action in the mouse mammary gland
M. Ranjan, O. Lee, Gannon Cottone, Elnaz Mirzaei Mehrabad +7 more
2021Breast Cancer Research20 citations Open access
Semantic Scholar
Preoperative magnetic resonance imaging use and oncologic outcomes in premenopausal breast cancer patients
Ze-Xian Zeng, A. Amin, Ankita Roy, Natalie Pulliam +6 more
2020npj Breast Cancer20 citations Open access
Semantic Scholar
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA
Lin Yang, Jin Wang, J. Altreuter, Aashna Jhaveri +16 more
2023Nature Protocols19 citations
Semantic Scholar
CRISP-view: a database of functional genetic screens spanning multiple phenotypes
Yingbo Cui, Xiao-Long Cheng, Qing-kui Chen, Bic-Na Song +12 more
2020Nucleic Acids Res.17 citations Open access
Semantic Scholar
Boron neutron capture therapy preserves immune cells and induces robust anti-tumour immunity in preclinical mouse model
Qi Sun, Yan-Ping Zhao, Simiao Qiao, Kexuan Wang +9 more
2026Nature Communications15 citations Open access
Semantic Scholar
Somatic genetic aberrations in benign breast disease and the risk of subsequent breast cancer
Ze-Xian Zeng, Andy H. Vo, Xiaoyu Li, A. Shidfar +6 more
2019npj Breast Cancer15 citations Open access
Semantic Scholar
A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer
M. Mason, Óscar Lapuente-Santana, Anni S. Halkola, Wenyu Wang +41 more
2022bioRxiv13 citations Open access
Semantic Scholar
Conjugated equine estrogen and medroxyprogesterone acetate are associated with decreased risk of breast cancer relative to bioidentical hormone therapy and controls
Ze-Xian Zeng, Xia Jiang, Xiaoyu Li, Alan Wells +2 more
2018PLoS ONE12 citations Open access
Semantic Scholar
SOAR elucidates biological insights and empowers drug discovery through spatial transcriptomics
Yi-Ming Li, Y. Ding, Saya R. Dennis, M. Hutch +12 more
2025Science Advances11 citations Open access
Semantic Scholar
Systematic Benchmarking of High-Throughput Subcellular Spatial Transcriptomics Platforms
Peng-Fei Ren, Rui Zhang, Yunfeng Wang, Peng Zhang +15 more
2024bioRxiv11 citations Open access
Semantic Scholar
Cross-site concordance evaluation of tumor DNA and RNA sequencing platforms for the CIMAC-CIDC network
Ze-Xian Zeng, Jing-Xin Fu, C. Cibulskis, Aashna Jhaveri +44 more
2020Clinical Cancer Research11 citations Open access
Semantic Scholar
SOAR elucidates disease mechanisms and empowers drug discovery through spatial transcriptomics
Yi-Ming Li, Saya R. Dennis, M. Hutch, Y. Ding +10 more
2023bioRxiv10 citations Open access
Semantic Scholar
Deep learning for cancer type classification
Ze-Xian Zeng, Chengsheng Mao, Andy H. Vo, Janna Ore Nugent +3 more
2019bioRxiv10 citations Open access
Semantic Scholar
Performance evaluation of operating room schedules in orthopedic surgery
Ze-Xian Zeng, Xiao-Lei Xie, Heidi Menaker, Susan G. Sanford-Ring +1 more
201810 citations
Semantic Scholar
Lipid exposure activates gene expression changes associated with estrogen receptor negative breast cancer
S. Yadav, Ranya K. A. Virk, Carolina H. Chung, M. Eduardo +13 more
2022npj Breast Cancer9 citations Open access
Semantic Scholar
Uncovering spatially resolved functional genomics with CRISPR screen sequencing.
Hao-Rui Zhang, Zong-Xu Zhang, Peiyu Wang, Tian Xu +17 more
2026Cell8 citations Open access
Semantic Scholar
Using Clinical Narratives and Structured Data to Identify Distant Recurrences in Breast Cancer
Ze-Xian Zeng, Roy Ankita, Xiaoyu Li, Espino Sasa +3 more
2018IEEE International Conference on Healthcare Informatics8 citations
Semantic Scholar
Perturbation of calreticulin potentiates CD8+ T cell-mediated antitumor immunity.
Kaiyang Tang, Lijian Wu, Yuanzhi Hu, Teng Xue +9 more
2025Journal of Experimental Medicine6 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

S. Gu×11
Invite
S. Gu — researcher profile on SciRah
Wubing Zhang×11
Invite
Wubing Zhang — researcher profile on SciRah
S. Khan×11
Invite
S. Khan — researcher profile on SciRah
Jing-Xin Fu×10
Invite
Jing-Xin Fu — researcher profile on SciRah

×10

Invite

X. Liu — researcher profile on SciRah

Invite

S. Clare — researcher profile on SciRah

Xiao-Qing Wang×7

Invite

Xiao-Qing Wang — researcher profile on SciRah

Invite

C. Tokheim — researcher profile on SciRah

Invite

Yi Zhang — researcher profile on SciRah

Invite

Yuan Luo — researcher profile on SciRah

Myles A. Brown×6

Invite

Myles A. Brown — researcher profile on SciRah

Invite

Xiaoyu Li — researcher profile on SciRah