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S. Soares · SciRah

Researcher profile · Semantic Scholar

S. Soares

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S. Soares — researcher profile on SciRah

h-index: 23
Works: 80
Citations: 1,796

Most-cited papers

GIPSy: Genomic island prediction software.
S. Soares, H. Geyik, R. Ramos, P. D. de Sá +7 more
2016Journal of Biotechnology139 citations Open access
Semantic Scholar
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
S. Soares, Artur Silva, E. Trost, J. Blom +21 more
2013PLoS ONE132 citations Open access
Semantic Scholar
Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains
J. Ruiz, V. D'Afonseca, Artur Silva, Amjad Ali +55 more
2011PLoS ONE126 citations Open access
Semantic Scholar
Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors
E. Trost, Arwa Al-Dilaimi, Panagiotis P Papavasiliou, J. Schneider +16 more
2011BMC Genomics107 citations Open access
Semantic Scholar
First Steps in the Analysis of Prokaryotic Pan-Genomes
S. Costa, L. Guimarães, Artur Silva, S. Soares +1 more
2020Bioinformatics and Biology Insights104 citations Open access
Semantic Scholar
PIPS: Pathogenicity Island Prediction Software
S. Soares, V. Abreu, R. Ramos, L. Cerdeira +8 more
2012PLoS ONE76 citations Open access
Semantic Scholar
Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
L. C. Oliveira, T. Saraiva, W. Silva, U. Pereira +6 more
2017PLoS ONE60 citations Open access
Semantic Scholar
An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach
Arun Kumar Jaiswal, S. Tiwari, S. Jamal, D. Barh +2 more
2017International Journal of Molecular Sciences57 citations Open access
Semantic Scholar
Multi-epitope based vaccine against yellow fever virus applying immunoinformatics approaches
Stephane Fraga de Oliveira Tosta, M. Passos, Rodrigo Kato, Álvaro Salgado +7 more
2019Journal of Biomolecular Structure and Dynamics55 citations Open access
Semantic Scholar
Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets
Amjad Ali, Anam Naz, S. Soares, Marriam Bakhtiar +11 more
2015BioMed Research International55 citations Open access
Semantic Scholar
Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis
Artur Silva, M. Schneider, L. Cerdeira, M. S. Barbosa +18 more
2010Journal of Bacteriology54 citations Open access
Semantic Scholar
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production.
S. Soares, E. Trost, R. Ramos, A. Carneiro +19 more
2013Journal of Biotechnology51 citations
Semantic Scholar
An introduction of the role of probiotics in human infections and autoimmune diseases
H. Sales-Campos, S. Soares, C. J. Oliveira
2019Critical reviews in microbiology44 citations
Semantic Scholar
Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets.
Amjad Ali, S. Soares, A. Santos, L. Guimarães +14 more
2012Gene42 citations Open access
Semantic Scholar
The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome
A. Santos, A. Carneiro, A. Gala-García, A. Pinto +15 more
2012BMC Genomics39 citations Open access
Semantic Scholar
Pan-genomic approach shows insight of genetic divergence and pathogenic-adaptation of Pasteurella multocida.
R. Hurtado, D. Carhuaricra, S. Soares, M. Viana +3 more
2018Gene32 citations
Semantic Scholar
Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain
L. C. Oliveira, T. Saraiva, S. Soares, R. Ramos +36 more
2014Genome Announcements31 citations Open access
Semantic Scholar
Pan-Resistome Insights into the Multidrug Resistance of Acinetobacter baumannii
D. L. Rodrigues, Francielly Morais-Rodrigues, R. Hurtado, R. D. Dos Santos +9 more
2020Antibiotics29 citations Open access
Semantic Scholar
GapBlaster—A Graphical Gap Filler for Prokaryote Genomes
P. D. de Sá, F. Miranda, Adonney Allan de Oliveira Veras, D. M. de Melo +6 more
2016PLoS ONE29 citations Open access
Semantic Scholar
Multilocus sequence types of invasive Corynebacterium diphtheriae isolated in the Rio de Janeiro urban area, Brazil
S. Z. Viguetti, L. Pacheco, L. Santos, S. Soares +9 more
2011Epidemiology and Infection26 citations Open access
Semantic Scholar
Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain 1/06-A, Isolated from a Horse in North America
Florence E. Pethick, Alex F. Lainson, Raja Yaga, A. Flockhart +30 more
2012Journal of Bacteriology25 citations Open access
Semantic Scholar
In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples.
U. Pereira, S. Soares, J. Blom, C. A. G. Leal +12 more
2013Genetics and Molecular Research24 citations Open access
Semantic Scholar
Complete Genome Sequences of Corynebacterium pseudotuberculosis Strains 3/99-5 and 42/02-A, Isolated from Sheep in Scotland and Australia, Respectively
Florence E. Pethick, Alex F. Lainson, Raja Yaga, A. Flockhart +30 more
2012Journal of Bacteriology23 citations Open access
Semantic Scholar
A shift in the virulence potential of Corynebacterium pseudotuberculosis biovar ovis after passage in a murine host demonstrated through comparative proteomics
W. Silva, F. Dorella, S. Soares, G. Souza +7 more
2017BMC Microbiology22 citations Open access
Semantic Scholar
Label-free quantitative proteomics of Corynebacterium pseudotuberculosis isolates reveals differences between Biovars ovis and equi strains
W. Silva, E. Folador, S. Soares, G. Souza +7 more
2017BMC Genomics22 citations Open access
Semantic Scholar
Label-free proteomic analysis to confirm the predicted proteome of Corynebacterium pseudotuberculosis under nitrosative stress mediated by nitric oxide
W. Silva, R. Carvalho, S. Soares, I. Bastos +6 more
2014BMC Genomics22 citations Open access
Semantic Scholar
Insights into the Vibrio Genus: A One Health Perspective from Host Adaptability and Antibiotic Resistance to In Silico Identification of Drug Targets
P. H. Marques, Ligia Carolina da Silva Prado, A. G. Felice, T. C. V. Rodrigues +5 more
2022Antibiotics20 citations Open access
Semantic Scholar
An insight into the salivary gland and fat body transcriptome of Panstrongylus lignarius (Hemiptera: Heteroptera), the main vector of Chagas disease in Peru
J. C. Nevoa, M. T. Mendes, M. D. Barbosa da Silva, S. Soares +2 more
2018PLoS Neglected Tropical Diseases20 citations Open access
Semantic Scholar
The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology
Eduarda Guimarães Sousa, G. Campos, M. Viana, Gabriel Camargos Gomes +9 more
2025Frontiers in Microbiology18 citations Open access
Semantic Scholar
Environmental Biofilms from an Urban Community in Salvador, Brazil, Shelter Previously Uncharacterized Saprophytic Leptospira
Priscyla dos Santos Ribeiro, N. Carvalho, F. Aburjaile, T. Sousa +16 more
2023Microbial Ecology17 citations Open access
Semantic Scholar
Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout
H. Figueiredo, S. Soares, F. Pereira, F. Dorella +4 more
2015BMC Genomics17 citations Open access
Semantic Scholar
Compctutational identification of putative common genomic drug and vaccine targets in Mycoplasma genitalium.
W. Nogueira, A. Jaiswal, S. Tiwari, R. Ramos +4 more
2021Genomics16 citations Open access
Semantic Scholar
Comparative proteomic analysis of four biotechnological strains Lactococcus lactis through label‐free quantitative proteomics
W. Silva, C. Sousa, L. C. Oliveira, S. Soares +7 more
2018Microbial Biotechnology16 citations Open access
Semantic Scholar
Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes.
Felipe L. Pereira, S. Soares, F. Dorella, C. Leal +1 more
2016Genomics16 citations Open access
Semantic Scholar
The pan-genome of Treponema pallidum reveals differences in genome plasticity between subspecies related to venereal and non-venereal syphilis
A. Jaiswal, S. Tiwari, S. Jamal, Letícia de Castro Oliveira +5 more
2020BMC Genomics15 citations Open access
Semantic Scholar
Quantitative Proteomic Analysis of the Response of Probiotic Putative Lactococcus lactis NCDO 2118 Strain to Different Oxygen Availability Under Temperature Variation
Wanderson Marques Da Silva, L. C. Oliveira, S. Soares, C. Sousa +6 more
2019Frontiers in Microbiology15 citations Open access
Semantic Scholar
Genomic Characterization of Aeromonas veronii Provides Insights into Taxonomic Assignment and Reveals Widespread Virulence and Resistance Genes throughout the World
José Cleves da Silva Maia, Gabriel Amorim de Albuquerque Silva, Letícia Stheffany de Barros Cunha, G. V. Gouveia +9 more
2023Antibiotics14 citations Open access
Semantic Scholar
reannotation of the Corynebacterium diphtheriae ncTc13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria
V. D'Afonseca, S. Soares, Amjad Ali, A. Santos +20 more
201214 citations
Semantic Scholar
In silico designing of a recombinant multi-epitope antigen for leprosy diagnosis
M. Lemes, T. C. V. Rodrigues, A. Jaiswal, S. Tiwari +7 more
2022Journal of Genetic Engineering and Biotechnology13 citations Open access
Semantic Scholar
The impact of quality filter for RNA-Seq.
P. D. de Sá, Adonney A. O. Veras, A. Carneiro, Kenny Pinheiro +6 more
2015Gene13 citations Open access
Semantic Scholar
Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes
Allan Veras, F. Araújo, Kenny Pinheiro, L. Guimarães +4 more
2018Scientific Reports11 citations Open access
Semantic Scholar
Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype
H. N. R. Jesus, Danilo J. P. G. Rocha, R. Ramos, Artur Silva +12 more
2022Frontiers in Microbiology10 citations Open access
Semantic Scholar
Comparative genomics of Bordetella pertussis and prediction of new vaccines and drug targets
A. G. Felice, Leonardo N. Santos, Ian Kolossowski, F. L. Zen +11 more
2021Journal of Biomolecular Structure and Dynamics10 citations
Semantic Scholar
Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis
L. Guimarães, S. Soares, Andreas Albersmeier, J. Blom +5 more
2013Genome Announcements10 citations Open access
Semantic Scholar
Draft Genome Sequence of Corynebacterium striatum 1961 BR-RJ/09, a Multidrug-Susceptible Strain Isolated from the Urine of a Hospitalized 37-Year-Old Female Patient
A. Mattos-Guaraldi, L. Guimarães, Carolina S. Santos, Adonney A. O. Veras +10 more
2015Genome Announcements9 citations Open access
Semantic Scholar
Whole-genome sequencing analysis of multidrug-resistant Serratia marcescens isolates in an intensive care unit in Brazil.
Thalita P. P. S. Cruz, Francisco Ksf Azevedo, M. A. Pepato, P. Rizzo +10 more
2024Journal of Infection in Developing Countries8 citations Open access
Semantic Scholar
Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil
H. Figueiredo, C. Leal, F. Pereira, S. Soares +4 more
2016Genome Announcements8 citations Open access
Semantic Scholar
Whole-Genome Sequence of Leptospira interrogans Serovar Hardjo Subtype Hardjoprajitno Strain Norma, Isolated from Cattle in a Leptospirosis Outbreak in Brazil
M. R. V. Cosate, S. Soares, T. Mendes, R. Raittz +5 more
2015Genome Announcements8 citations Open access
Semantic Scholar
Complete Genome Sequences of Fish Pathogenic Weissella ceti Strains WS74 and WS105
H. Figueiredo, C. Leal, F. Dorella, A. Carvalho +3 more
2014Genome Announcements8 citations Open access
Semantic Scholar
Reverse vaccinology and subtractive genomics approaches for identifying common therapeutics against Mycobacterium leprae and Mycobacterium lepromatosis
A. Jaiswal, S. Tiwari, S. Jamal, Letícia de Castro Oliveira +9 more
2021Journal of Venomous Animals and Toxins including Tropical Diseases6 citations Open access
Semantic Scholar

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