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Theodore R. Pak · SciRah

Researcher profile · Semantic Scholar

Theodore R. Pak

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Theodore R. Pak — researcher profile on SciRah

h-index: 17
Works: 62
Citations: 1,295

Most-cited papers

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins
O. Rozenblatt-Rosen, Rahul C. Deo, M. Padi, G. Adelmant +48 more
2012Nature228 citations Open access
Semantic Scholar
Sequence-based estimation of minisatellite and microsatellite repeat variability.
M. Legendre, N. Pochet, Theodore R. Pak, K. Verstrepen
2007Genome Research217 citations Open access
Semantic Scholar
Interpreting Cancer Genomes Using Systematic Host Perturbations by Tumour Virus Proteins
O. Rozenblatt-Rosen, Rahul C. Deo, M. Padi, G. Adelmant +55 more
2012190 citations
Semantic Scholar
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis
Pedro H. Oliveira, John W. Ribis, Elizabeth M. Garrett, Dominika Trzilova +27 more
2019Nature Microbiology99 citations Open access
Semantic Scholar
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Daniela Michlmayr, Theodore R. Pak, A. Rahman, E. Amir +12 more
2018Molecular Systems Biology76 citations Open access
Semantic Scholar
Morphine via nitric oxide modulates beta-amyloid metabolism: a novel protective mechanism for Alzheimer's disease.
Theodore R. Pak, P. Cadet, K. Mantione, G. Stefano
2005Medical Science Monitor57 citations
Semantic Scholar
Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection
D. Altman, Mitchell J. Sullivan, K. Chacko, D. Balasubramanian +16 more
2018Infection and Immunity56 citations Open access
Semantic Scholar
Risk of Misleading Conclusions in Observational Studies of Time-to-Antibiotics and Mortality in Suspected Sepsis.
Theodore R. Pak, Jessica G. Young, C. McKenna, A. Agan +7 more
2023Clinical Infectious Diseases45 citations
Semantic Scholar
How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management
Theodore R. Pak, A. Kasarskis
2015Clinical Infectious Diseases43 citations Open access
Semantic Scholar
High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures.
Rebecca E. Hamlin, A. Rahman, Theodore R. Pak, Kevin Maringer +10 more
2017JCI Insight29 citations Open access
Semantic Scholar
Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia
K. Chacko, Mitchell J. Sullivan, C. Beckford, D. Altman +6 more
2018Antimicrobial Agents and Chemotherapy28 citations Open access
Semantic Scholar
Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient
A. Bashir, Oliver Attie, Mitchell J. Sullivan, R. Sebra +13 more
2017PLoS ONE25 citations Open access
Semantic Scholar
Whole-Genome Sequencing Identifies Emergence of a Quinolone Resistance Mutation in a Case of Stenotrophomonas maltophilia Bacteremia
Theodore R. Pak, D. Altman, Oliver Attie, R. Sebra +13 more
2015Antimicrobial Agents and Chemotherapy22 citations Open access
Semantic Scholar
PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
Ana Berbel Caban, Theodore R. Pak, Ajay Obla, A. Dupper +15 more
2020Genome Medicine19 citations Open access
Semantic Scholar
Real Time Investigation of a large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology
W. Javaid, J. Ehni, A. Gonzalez-Reiche, J. Carreño +23 more
2020medRxiv19 citations Open access
Semantic Scholar
ChromoZoom: a flexible, fluid, web-based genome browser
Theodore R. Pak, Frederick P. Roth
2012Bioinform.18 citations Open access
Semantic Scholar
A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
Mitchell J. Sullivan, D. Altman, K. Chacko, B. Ciferri +19 more
2019Journal of Clinical Microbiology17 citations Open access
Semantic Scholar
Why clinical trials are terminated
Theodore R. Pak, Maria D. Rodriguez, Frederick P. Roth
2015bioRxiv16 citations Open access
Semantic Scholar
Discontinuation of Universal Admission Testing for SARS-CoV-2 and Hospital-Onset COVID-19 Infections in England and Scotland.
Theodore R. Pak, C. Rhee, Rui Wang, M. Klompas
2023JAMA Internal Medicine13 citations Open access
Semantic Scholar
Morbidity and mortality of hospital-onset SARS-CoV-2 infections due to Omicron versus prior variants: a propensity-matched analysis
M. Klompas, C. McKenna, S. Kanjilal, Theodore R. Pak +2 more
2024Annals of Internal Medicine10 citations
Semantic Scholar
Syndromic Analysis of Sepsis Cohorts Using Large Language Models
Theodore R. Pak, S. Kanjilal, C. McKenna, Alexander Hoffner-Heinike +2 more
2025JAMA Network Open9 citations
Semantic Scholar
Assessment of racial, ethnic, and sex-based disparities in time-to-antibiotics and sepsis outcomes in a large multi-hospital cohort
Theodore R. Pak, Sarimer M Sánchez, C. McKenna, C. Rhee +1 more
2024Critical Care Medicine9 citations Open access
Semantic Scholar
Testing and Masking Policies and Hospital-Onset Respiratory Viral Infections
Theodore R. Pak, Tom Chen, S. Kanjilal, C. McKenna +2 more
2024JAMA Network Open9 citations Open access
Semantic Scholar
Timing and Spectrum of Antibiotic Treatment for Suspected Sepsis and Septic Shock: Why so Controversial?
Theodore R. Pak, C. Rhee, M. Klompas
2022Infectious Disease Clinics of North America9 citations
Semantic Scholar
Estimating local costs associated with Clostridium difficile infection using machine learning and electronic medical records
Theodore R. Pak, K. Chacko, T. O'Donnell, S. Huprikar +3 more
2017Infection Control & Hospital Epidemiology8 citations Open access
Semantic Scholar
Association Between the Sequence of β-lactam and Vancomycin Administration and Mortality in Patients with Suspected Sepsis.
Yutaka Kondo, M. Klompas, C. McKenna, Theodore R. Pak +3 more
2024Clinical Infectious Diseases4 citations
Semantic Scholar
A User-Editable Web-Based Platform to Streamline Clinical Information Flow
M. Finkelstein, Ammar Siddiqui, Theodore R. Pak, K. Hu +5 more
2015Medical Informatics Europe4 citations
Semantic Scholar
Using artificial intelligence to advance pediatric infection prevention and control.
Thomas S Murray, Morgan Quan, Michael J. Aniskiewicz, Theodore R. Pak
2026Current opinion in pediatrics2 citations
Semantic Scholar
In Support of Universal Admission Testing for SARS-CoV-2 During Significant Community Transmission.
C. Rhee, M. Klompas, Theodore R. Pak, J. Köhler
2023Clinical Infectious Diseases2 citations Open access
Semantic Scholar
Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events
Mitchell J. Sullivan, D. Altman, K. Chacko, B. Ciferri +19 more
2019bioRxiv2 citations Open access
Semantic Scholar
Epigenomic landscape of the human pathogen Clostridium difficile
Pedro H. Oliveira, John W. Ribis, Elizabeth M. Garrett, Dominika Trzilova +25 more
2018bioRxiv2 citations Open access
Semantic Scholar
Longitudinal Whole-Genome Analysis Identifies Variants Associated with Vancomycin and Linezolid Resistance Changes in Enterococcus faecium in Response to Treatment
K. Chacko, Theodore R. Pak, R. Sebra, A. Kasarskis +2 more
20162 citations Open access
Semantic Scholar
Supplementary Material 12
O. Rozenblatt-Rosen, Rahul C. Deo, M. Padi, G. Adelmant +48 more
20152 citations
Semantic Scholar
Supplementary Material 23
O. Rozenblatt-Rosen, Rahul C. Deo, M. Padi, G. Adelmant +48 more
20122 citations
Semantic Scholar
NEWS2 versus shock status to stratify antibiotic urgency in patients with suspected sepsis: a retrospective, multicentre cohort study.
C. Rhee, Mervyn Singer, Theodore R. Pak, C. McKenna +8 more
2026The Lancet Respiratory Medicine1 citations Open access
Semantic Scholar
PathogenDB: A Modular Software Suite Integrating Genomic Clinical Microbiology and Epidemiology
Theodore R. Pak, Mitchell J. Sullivan, Oliver Attie, Elizabeth Webster +3 more
20161 citations Open access
Semantic Scholar
Reply to Lesho.
Theodore R. Pak, A. Kasarskis
2016Clinical Infectious Diseases1 citations Open access
Semantic Scholar
Using electronic health records to assess the relationship between colonization pressure and nosocomial pathogen acquisition
Luke Sagers, Ziming Wei, C. McKenna, C. Chan +5 more
2026Nature Communications0 citations
Semantic Scholar
Early Sepsis Treatment and the Long Road Home.
Theodore R. Pak, Jonathan D. Baghdadi
2026Chest0 citations
Semantic Scholar
38: OPTIMIZING SEPSIS TIME ZERO DEFINITIONS BASED ON ASSOCIATIONS OF TIME-TO-ANTIBIOTICS WITH MORTALITY
C. Rhee, Theodore R. Pak, J. Young, C. McKenna +12 more
2025Critical Care Medicine0 citations
Semantic Scholar
Hospital unit colonization pressure and nosocomial acquisition of drug susceptible and drug resistant pathogens
Luke Sagers, Ziming Wei, C. McKenna, C. Chan +5 more
2025medRxiv0 citations Open access
Semantic Scholar
Protecting patients and peers from healthcare personnel with respiratory viral infections
M. Klompas, Theodore R. Pak, C. Rhee
2025Infection control and hospital epidemiology0 citations
Semantic Scholar
1552: ASSOCIATION BETWEEN SEQUENCE OF BETA-LACTAM AND VANCOMYCIN ADMINISTRATION AND MORTALITY IN SEPSIS
Yutaka Kondo, M. Klompas, C. McKenna, Theodore R. Pak +3 more
2025Critical Care Medicine0 citations
Semantic Scholar
1574: TIME-TO-ANTIBIOTICS AND MORTALITY IN SUSPECTED SEPSIS USING NEWS2 VS SHOCK TO RISK-STRATIFY PATIENTS
C. Rhee, Mervyn Singer, Theodore R. Pak, C. McKenna +8 more
2025Critical Care Medicine0 citations
Semantic Scholar
Association between hospital-onset SARS-CoV-2 and ending universal admission testing and masking at five US hospitals
Theodore R. Pak, S. Kanjilal, Cara McKenna, C. Rhee +1 more
2024Antimicrobial Stewardship and Healthcare Epidemiology0 citations Open access
Semantic Scholar
Association between stopping universal SARS-CoV-2 admission testing and hospital-onset SARS-CoV-2 in England and Scotland
Theodore R. Pak, C. Rhee, Michael Klompasl
2023Antimicrobial Stewardship and Healthcare Epidemiology0 citations Open access
Semantic Scholar
1014. Assessment of racial, ethnic, and sex-based disparities in time-to-antibiotics and sepsis outcomes in a large multi-hospital cohort
Theodore R. Pak, Sarimer M Sánchez, C. McKenna, C. Rhee +1 more
2023Open Forum Infectious Diseases0 citations Open access
Semantic Scholar
2476. Universal detection of healthcare-related bacterial transmissions using de novo assembly with short-read whole genome sequencing
Theodore R. Pak, Meghan A. Baker, Rebecca M. McSweeney, Kenneth E. Sands +13 more
2023Open Forum Infectious Diseases0 citations Open access
Semantic Scholar
Screening for Torture, Asylum, and Trauma among Patients Seeking Care in an Urban Student-Run Free Clinic
Jonathan Pan, Andrew M. Leader, Eileen Wang, Nicole Ratnapala +8 more
2022Journal of student-run clinics0 citations Open access
Semantic Scholar
PathoSPOT genomic surveillance reveals under the radar outbreaks of methicillin resistant S. aureus bloodstream infections
A. Caban, Theodore R. Pak, Ajay Obla, A. Dupper +15 more
2020medRxiv0 citations Open access
Semantic Scholar

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A. Kasarskis×17
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A. Kasarskis — researcher profile on SciRah
H. van Bakel×14
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