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Bahman Afsari · SciRah

Researcher profile · Semantic Scholar

Bahman Afsari

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Bahman Afsari — researcher profile on SciRah

h-index: 15
Works: 40
Citations: 3,743

Most-cited papers

Detection and localization of surgically resectable cancers with a multi-analyte blood test
J. Cohen, Lu Li, Yuxuan Wang, C. Thoburn +38 more
2018Science2,489 citations Open access
Semantic Scholar
Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers
Yuxuan Wang, Lu Li, C. Douville, J. Cohen +33 more
2018Science Translational Medicine240 citations Open access
Semantic Scholar
Inferring causal molecular networks: empirical assessment through a community-based effort
S. Hill, L. Heiser, T. Cokelaer, Michael Unger +34 more
2016Nature Methods229 citations Open access
Semantic Scholar
A multimodality test to guide the management of patients with a pancreatic cyst
S. Springer, David L. Masica, M. dal Molin, C. Douville +56 more
2019Science Translational Medicine186 citations Open access
Semantic Scholar
Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy
S. Springer, Chung-Hsin Chen, M. R. Rodriguez Pena, Lu Li +36 more
2018eLife169 citations Open access
Semantic Scholar
A simple and reproducible breast cancer prognostic test
L. Marchionni, Bahman Afsari, D. Geman, J. Leek
2013BMC Genomics60 citations Open access
Semantic Scholar
Learning Dysregulated Pathways in Cancers from Differential Variability Analysis
Bahman Afsari, D. Geman, E. Fertig
2014Cancer Informatics57 citations Open access
Semantic Scholar
switchBox: an R package for k-Top Scoring Pairs classifier development
Bahman Afsari, E. Fertig, D. Geman, L. Marchionni
2015Bioinform.56 citations Open access
Semantic Scholar
Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks
Dylan Kelley, Emily Flam, E. Izumchenko, L. Danilova +18 more
2017Cancer Research51 citations Open access
Semantic Scholar
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations
X. Lin, Bahman Afsari, L. Marchionni, L. Cope +3 more
2009BMC Bioinformatics47 citations Open access
Semantic Scholar
A novel functional splice variant of AKT3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers
Theresa Guo, Akihiro Sakai, Bahman Afsari, M. Considine +12 more
2017Cancer Research43 citations Open access
Semantic Scholar
Rank discriminants for predicting phenotypes from RNA expression
Bahman Afsari, U. Braga-Neto, D. Geman
201435 citations Open access
Semantic Scholar
Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data
Emily F. Davis-Marcisak, Thomas Sherman, Pranay Orugunta, G. Stein-O'Brien +8 more
2019Cancer Research33 citations Open access
Semantic Scholar
A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines
M. Gönen, B. Weir, G. Cowley, F. Vazquez +81 more
2017Cell Systems20 citations Open access
Semantic Scholar
Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer
Bahman Afsari, Albert Kuo, Yifan Zhang, Lu Li +9 more
2021eLife17 citations Open access
Semantic Scholar
Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma
J. Humtsoe, Hyun-Su Kim, B. Leonard, Shizhang Ling +8 more
2021Cancer Research15 citations Open access
Semantic Scholar
Microarray Classification from Several Two-Gene Expression Comparisons
Donald German, Bahman Afsari, A. Tan, D. Naiman
20082008 Seventh International Conference on Machine Learning and Applications14 citations
Semantic Scholar
Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy
S. Springer, Chung-Hsin Chen, M. R. Rodriguez Pena, Lu Li +36 more
2018eLife12 citations Open access
Semantic Scholar
Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer
Bahman Afsari, Theresa Guo, M. Considine, Liliana D. Florea +12 more
2016bioRxiv10 citations Open access
Semantic Scholar
Hobotnica: exploring molecular signature quality
A. Stupnikov, Alexey Sizykh, Anna Budkina, A. Favorov +4 more
2021bioRxiv5 citations Open access
Semantic Scholar
Non-invasive detection of bladder cancer through the analysis of driver gene mutations and aneuploidy
S. Springer, Maria Del Carmen Rodriguez Pena, Lu Li, C. Douville +29 more
2017bioRxiv5 citations Open access
Semantic Scholar
Modeling cancer phenotypes with order statistics of transcript data
Bahman Afsari
20133 citations
Semantic Scholar
Quality of Life Assessment After Uterine Artery Embolization in Patients with Fibroids Treated in an Ambulatory Setting
J. Geschwind, Bahman Afsari, N. Nezami, Jacob M. White +2 more
2025Diagnostics2 citations Open access
Semantic Scholar
Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data
Emily F. Davis-Marcisak, Pranay Orugunta, G. Stein-O'Brien, Sidharth V. Puram +7 more
2018bioRxiv2 citations Open access
Semantic Scholar
Comparative assessment of physiochemical metrics for the clustering of adaptive immune receptor repertoires.
Alexander A. Girgis, Amanda L. Huff, Emily F. Davis-Marcisak, Theron Palmer +13 more
2025Nucleic Acids Research1 citations Open access
Semantic Scholar
Abstract 4697: Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data
Emily F. Davis-Marcisak, Pranay Orugunta, G. Stein-O'Brien, Sidharth V. Puram +7 more
2019Tumor Biology1 citations Open access
Semantic Scholar
REVA: a rank-based multi-dimensional measure of correlation
Bahman Afsari, Alexander V. Favorov, E. Fertig, L. Cope
2018bioRxiv1 citations Open access
Semantic Scholar
Non-invasive detection of upper tract urothelial carcinomas through the analysis of driver gene mutations and aneuploidy in urine
S. Springer, Chung-Hsin Chen, Lu Li, C. Douville +25 more
2017bioRxiv1 citations Open access
Semantic Scholar
GSReg : A Package for Gene Set Variability Analysis
Bahman Afsari, E. Fertig
20161 citations
Semantic Scholar
KSHV-infected endothelial cells expand and up-regulate angiogenic pathways and CXCR4 in patient-derived Kaposi sarcoma models
Xiaofan Li, Z. Ohler, Amanda Day, Laura Bassel +15 more
2026Science Translational Medicine0 citations Open access
Semantic Scholar
Dosimetric parameter-based machine learning to predict radiation pneumonitis following breast radiotherapy
Hamid Ghaznavi, F. Allaveisi, Z. Saleh, Shima Azimi Oliaei +2 more
2026Physics in Medicine and Biology0 citations Open access
Semantic Scholar
Author response: Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer
Bahman Afsari, Albert Kuo, Yifan Zhang, Lu Li +9 more
20200 citations Open access
Semantic Scholar
Abstract 3399: Uncovering hidden sources of transcriptional dysregulation arising from inter- and intra-tumor heterogeneity
Bahman Afsari, L. Cope, Daria A. Gaykalova, D. Geman +4 more
2019Bioinformatics, Convergence Science, and Systems Biology0 citations
Semantic Scholar
Non-invasive detection of bladder cancer through the analysis of driver gene 1 mutations and aneuploidy 2 3
S. Springer, Maria Del Carmen Rodriguez Pena, Lu Li, Chris +34 more
20170 citations
Semantic Scholar
Title : A novel functional splice variant of AKT 3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers
Theresa Guo, Akihiro Sakai, Bahman Afsari, M. Considine +12 more
20170 citations
Semantic Scholar
Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer
Bahman Afsari, Theresa Guo, M. Considine, Dylan Kelley +9 more
20170 citations
Semantic Scholar
Gene Set BenchMark
Bahman Afsari, E. Fertig
20160 citations
Semantic Scholar
Splice Expression Variation Analysis (SEVA) for Differential Gene Isoform Usage in Cancer
Bahman Afsari, T. Guo, M. Considine, Liliana Florea +9 more
20160 citations
Semantic Scholar
Ordinal-Contextual Dissimilarity for Analysis of Heros in Tragedies
Bahman Afsari, K. Mazdapour, B. Jedynak
20150 citations
Semantic Scholar
switchBox : An R package for k-Top Scoring Pairs ( k TSP ) classifier development
Bahman Afsari, E. Fertig, D. Geman, L. Marchionni
20140 citations
Semantic Scholar
Abstract 5342: Hardwiring mechanism into predicting cancer phenotypes by computational learning
Bahman Afsari, E. Fertig, L. Younes, D. Geman +1 more
2014Molecular and Cellular Biology0 citations
Semantic Scholar

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