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Timir Tripathi · SciRah

Researcher profile · Semantic Scholar

Timir Tripathi

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Timir Tripathi — researcher profile on SciRah

ORCID iD 0000-0001-5559-289XHomepage

h-index: 31
Works: 146
Citations: 3,460

Most-cited papers

Molecular Dynamics Simulation of Protein and Protein–Ligand Complexes
Rohit Shukla, Timir Tripathi
2020213 citations
Semantic Scholar
Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2
P. Kalita, A. Padhi, Kam Y. J. Zhang, Timir Tripathi
2020Microbial Pathogenesis183 citations Open access
Semantic Scholar
One year update on the COVID-19 pandemic: Where are we now?
S. Mishra, Timir Tripathi
2020Acta Tropica178 citations Open access
Semantic Scholar
Muscarinic and nicotinic acetylcholine receptor agonists: current scenario in Alzheimer's disease therapy
S. Verma, Ashwini Kumar, Timir Tripathi, Awanish Kumar
2018The Journal of pharmacy and pharmacology107 citations
Semantic Scholar
Amyloid Cross-Seeding: Mechanism, Implication, and Inhibition
Sushma Subedi, Santanu Sasidharan, Niharika Nag, Prakash Saudagar +1 more
2022Molecules100 citations Open access
Semantic Scholar
Development of multi-epitope driven subunit vaccine against Fasciola gigantica using immunoinformatics approach.
P. Kalita, D. Lyngdoh, A. Padhi, Harish Shukla +1 more
2019International Journal of Biological Macromolecules77 citations
Semantic Scholar
Structure-based screening and molecular dynamics simulations offer novel natural compounds as potential inhibitors of Mycobacterium tuberculosis isocitrate lyase
Rohit Shukla, Harish Shukla, Amit Sonkar, Tripti Pandey +1 more
2018Journal of Biomolecular Structure and Dynamics75 citations
Semantic Scholar
High-throughput rational design of the remdesivir binding site in the RdRp of SARS-CoV-2: implications for potential resistance
A. Padhi, Rohit Shukla, Prakash Saudagar, Timir Tripathi
2020iScience72 citations Open access
Semantic Scholar
Unraveling the mechanism of arbidol binding and inhibition of SARS-CoV-2: Insights from atomistic simulations
A. Padhi, Aniruddha Seal, J. M. Khan, M. Ahamed +1 more
2020European Journal of Pharmacology67 citations Open access
Semantic Scholar
Can SARS-CoV-2 Accumulate Mutations in the S-Protein to Increase Pathogenicity?
A. Padhi, Timir Tripathi
2020ACS Pharmacology & Translational Science67 citations Open access
Semantic Scholar
Autophagy Modulation as a Treatment of Amyloid Diseases
Zoe Mputhia, E. Hone, Timir Tripathi, Tim J. Sargeant +2 more
2019Molecules65 citations Open access
Semantic Scholar
Accelerating COVID-19 Research Using Molecular Dynamics Simulation.
A. Padhi, S. Rath, Timir Tripathi
2021Journal of Physical Chemistry B52 citations
Semantic Scholar
Structural insights into natural compounds as inhibitors of Fasciola gigantica thioredoxin glutathione reductase
Rohit Shukla, Harish Shukla, P. Kalita, Timir Tripathi
2018Journal of Cellular Biochemistry45 citations
Semantic Scholar
Molecular Dynamics Simulation in Drug Discovery: Opportunities and Challenges
Rohit Shukla, Timir Tripathi
202144 citations
Semantic Scholar
Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite
S. Yadav, J. Prakash, Harish Shukla, Kanhu Charan Das +2 more
2020Pathogens and Global Health43 citations Open access
Semantic Scholar
Phase separation of FG-nucleoporins in nuclear pore complexes.
Niharika Nag, Santanu Sasidharan, V. Uversky, Prakash Saudagar +1 more
2022Biochimica et biophysica acta. Molecular cell research39 citations Open access
Semantic Scholar
Identification of novel natural inhibitors of Opisthorchis felineus cytochrome P450 using structure-based screening and molecular dynamic simulation
Rohit Shukla, P. Chetri, Amit Sonkar, M. Pakharukova +2 more
2018Journal of Biomolecular Structure and Dynamics39 citations
Semantic Scholar
Direct Interaction between the β-Amyloid Core and Tau Facilitates Cross-Seeding: A Novel Target for Therapeutic Intervention.
Timir Tripathi, H. Khan
2020Biochemistry37 citations
Semantic Scholar
Antibody-receptor bioengineering and its implications in designing bioelectronic devices.
Daphika S. Dkhar, R. Kumari, Supratim Mahapatra, Divya +3 more
2022International Journal of Biological Macromolecules35 citations
Semantic Scholar
Hotspot residues and resistance mutations in the nirmatrelvir-binding site of SARS-CoV-2 main protease: Design, identification, and correlation with globally circulating viral genomes
A. Padhi, Timir Tripathi
2022bioRxiv32 citations Open access
Semantic Scholar
Quercetin acts as a P-gp modulator via impeding signal transduction from nucleotide-binding domain to transmembrane domain
Ashutosh Singh, Sandesh Patel, Prateek Kumar, Kanhu Charan Das +6 more
2020Journal of Biomolecular Structure and Dynamics29 citations
Semantic Scholar
Interface‐based design of the favipiravir‐binding site in SARS‐CoV‐2 RNA‐dependent RNA polymerase reveals mutations conferring resistance to chain termination
A. Padhi, J. Dandapat, Prakash Saudagar, V. Uversky +1 more
2021FEBS Letters27 citations Open access
Semantic Scholar
Targeted design of drug binding sites in the main protease of SARS-CoV-2 reveals potential signatures of adaptation
A. Padhi, Timir Tripathi
2021Biochemical and Biophysical Research Communications - BBRC26 citations Open access
Semantic Scholar
Methodological advances in the design of peptide-based vaccines.
P. Kalita, Timir Tripathi
2022Drug Discovery Today24 citations
Semantic Scholar
Structure-based discovery of phenyl-diketo acids derivatives as Mycobacterium tuberculosis malate synthase inhibitors
Rohit Shukla, Harish Shukla, Timir Tripathi
2020Journal of Biomolecular Structure and Dynamics22 citations
Semantic Scholar
Biofunctionalized Chrysin-conjugated gold nanoparticles neutralize Leishmania parasites with high efficacy.
S. Raj, Santanu Sasidharan, Timir Tripathi, Prakash Saudagar
2022International Journal of Biological Macromolecules20 citations
Semantic Scholar
Synergistic Effect of Amyloid-β and Tau Disrupts Neural Circuits.
Timir Tripathi, P. Kalita
2019ACS Chemical Neuroscience20 citations Open access
Semantic Scholar
Prevalence and functionality of intrinsic disorder in human FG-nucleoporins.
D. Lyngdoh, Niharika Nag, V. Uversky, Timir Tripathi
2021International Journal of Biological Macromolecules19 citations
Semantic Scholar
Advances in vaccines: revolutionizing disease prevention
Timir Tripathi
2023Scientific Reports18 citations Open access
Semantic Scholar
A comprehensive protein design protocol to identify resistance mutations and signatures of adaptation in pathogens.
A. Padhi, Timir Tripathi
2022Briefings in Functional Genomics18 citations
Semantic Scholar
Targeting Nucleotide Binding Domain of Multidrug Resistance-associated Protein-1 (MRP1) for the Reversal of Multi Drug Resistance in Cancer
Divya Dhasmana, Ashutosh Singh, Rohit Shukla, Timir Tripathi +1 more
2018Scientific Reports18 citations Open access
Semantic Scholar
Computational Protein Design for COVID-19 Research and Emerging Therapeutics
P. Kalita, Timir Tripathi, A. Padhi
2023ACS Central Science16 citations Open access
Semantic Scholar
Biophysical and in-silico studies on the structure-function relationship of Brugia malayi protein disulfide isomerase
P. K. Doharey, Pravesh Verma, A. Dubey, S. Singh +5 more
2023Journal of Biomolecular Structure and Dynamics16 citations
Semantic Scholar
Alternate pathway to ascorbate induced inhibition of Mycobacterium tuberculosis.
Harish Shukla, S. Khan, Rohit Shukla, M. Y. Krishnan +2 more
2018Tuberculosis16 citations
Semantic Scholar
‘Intelligent’ proteins
Timir Tripathi, Vladmir N. Uversky, A. Giuliani
2025Cellular and Molecular Life Sciences15 citations Open access
Semantic Scholar
A Master Regulator of α-Synuclein Aggregation.
Timir Tripathi
2020ACS Chemical Neuroscience15 citations
Semantic Scholar
Identification and characterization of cytosolic malate dehydrogenase from the liver fluke Fasciola gigantica
P. Chetri, Rohit Shukla, Timir Tripathi
2020Scientific Reports15 citations Open access
Semantic Scholar
Designing a vaccine for fascioliasis using immunogenic 24 kDa mu-class glutathione s-transferase.
Jupitara Kalita, A. Padhi, Timir Tripathi
2020Infection, Genetics and Evolution15 citations
Semantic Scholar
Frontiers in Protein Structure, Function, and Dynamics
Timir Tripathi
202014 citations
Semantic Scholar
Tau-FG-nucleoporin98 interaction and impaired nucleocytoplasmic transport in Alzheimer's disease.
Niharika Nag, Timir Tripathi
2022Briefings in Functional Genomics13 citations
Semantic Scholar
Portrait of the Intrinsically Disordered Side of the HTLV-1 Proteome
D. Lyngdoh, Harish Shukla, Amit Sonkar, R. Anupam +1 more
2019ACS Omega13 citations Open access
Semantic Scholar
High Throughput Designing and Mutational Mapping of RBD-ACE2 Interface Guide Non-Conventional Therapeutic Strategies for COVID-19
A. Padhi, P. Kalita, Kam Y. J. Zhang, Timir Tripathi
2020bioRxiv12 citations Open access
Semantic Scholar
Autophagy Promotes Memory Formation.
Timir Tripathi, P. Kalita, R. Martins, P. Bharadwaj
2019ACS Chemical Neuroscience12 citations
Semantic Scholar
Conditional disorder in proteins: functional transitions between order and disorder.
B. Devi, Niharika Nag, V. Uversky, Timir Tripathi
2025Chemical Communications11 citations Open access
Semantic Scholar
Unfolding of Acinetobacter baumannii MurA proceeds through a metastable intermediate: A combined spectroscopic and computational investigation.
Amit Sonkar, Harish Shukla, Rohit Shukla, Jupitara Kalita +1 more
2019International Journal of Biological Macromolecules10 citations
Semantic Scholar
High-throughput design of symmetrical dimeric SARS-CoV-2 main protease: structural and physical insights into hotspots for adaptation and therapeutics.
A. Padhi, Timir Tripathi
2022Physical Chemistry, Chemical Physics - PCCP9 citations
Semantic Scholar
Rational Design of the Remdesivir Binding Site in the RNA-dependent RNA Polymerase of SARS-CoV-2: Implications for Potential Resistance
A. Padhi, Rohit Shukla, Timir Tripathi
2020bioRxiv9 citations Open access
Semantic Scholar
Identification and characterization of glyceraldehyde 3-phosphate dehydrogenase from Fasciola gigantica
P. Chetri, Rohit Shukla, Timir Tripathi
2019Parasitology Research9 citations
Semantic Scholar
Engineering glutathione S-transferase with a point mutation at conserved F136 residue increases the xenobiotic-metabolizing activity.
Jupitara Kalita, Harish Shukla, Timir Tripathi
2020International Journal of Biological Macromolecules8 citations
Semantic Scholar
How Does Arbidol Inhibit the Novel Coronavirus SARS-CoV-2? Atomistic Insights from Molecular Dynamics Simulations
A. Padhi, Aniruddha Seal, Timir Tripathi
20208 citations Open access
Semantic Scholar

Frequent co-authors

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A. Padhi×16
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A. Padhi — researcher profile on SciRah
Rohit Shukla×13
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Harish Shukla×9
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P. Kalita×8
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Niharika Nag — researcher profile on SciRah

Prakash Saudagar×5

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Santanu Sasidharan×3

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Jupitara Kalita×3

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Jupitara Kalita — researcher profile on SciRah