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N. Nair · SciRah

Researcher profile · Semantic Scholar

N. Nair

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N. Nair — researcher profile on SciRah

h-index: 16
Works: 68
Citations: 1,034

Most-cited papers

Synthetic lethal combination targeting BET uncovered intrinsic susceptibility of TNBC to ferroptosis
Nandini Verma, Yaron Vinik, A. Saroha, N. Nair +8 more
2020Science Advances163 citations Open access
Semantic Scholar
Synthetic lethality-mediated precision oncology via the tumor transcriptome
J. Lee, N. Nair, Gal Dinstag, Lesley M. Chapman +19 more
2021Cell138 citations Open access
Semantic Scholar
PERCEPTION accurately predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors
Sanju Sinha, R. Vegesna, S. Mukherjee, Ashwin V. Kammula +16 more
2024Nature Cancer98 citations Open access
Semantic Scholar
Genome-Wide Evaluation of Histone Methylation Changes Associated with Leaf Senescence in Arabidopsis
J. Brusslan, Ana M. Rus Alvarez-Canterbury, N. Nair, J. Rice +2 more
2012PLoS ONE78 citations Open access
Semantic Scholar
A landscape of response to drug combinations in non-small cell lung cancer
N. Nair, P. Greninger, Xiaohu Zhang, Adam A. Friedman +26 more
2023Nature Communications60 citations Open access
Semantic Scholar
Clinically oriented prediction of patient response to targeted and immunotherapies from the tumor transcriptome
Gal Dinstag, E. Shulman, Efrat Elis, D. Ben-Zvi +27 more
2022bioRxiv50 citations Open access
Semantic Scholar
Genome‐wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy
Avinash Sahu, Joo S Lee, Zhi-Yong Wang, Gao Zhang +28 more
2018bioRxiv40 citations Open access
Semantic Scholar
Genome‐scale metabolic modeling reveals SARS‐CoV‐2‐induced metabolic changes and antiviral targets
Kuo-Yuan Cheng, Laura Martin-Sancho, Lipika R. Pal, Y. Pu +6 more
2021bioRxiv37 citations Open access
Semantic Scholar
Migration rather than proliferation transcriptomic signatures are strongly associated with breast cancer patient survival
N. Nair, Avinash Sahu, Vasiliki-Maria Rogkoti, M. Fokkelman +10 more
2018Scientific Reports36 citations Open access
Semantic Scholar
ChIPnorm: A Statistical Method for Normalizing and Identifying Differential Regions in Histone Modification ChIP-seq Libraries
N. Nair, Avinash Sahu, P. Bucher, B. Moret
2012PLoS ONE36 citations Open access
Semantic Scholar
PYK2 negatively regulates the Hippo pathway in TNBC by stabilizing TAZ protein
Amir Kedan, Nandini Verma, A. Saroha, Michal Shreberk-Shaked +3 more
2018Cell Death and Disease35 citations Open access
Semantic Scholar
Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
N. Nair, Kuo-Yuan Cheng, Lamis Naddaf, E. Sharon +8 more
2022Science Advances27 citations Open access
Semantic Scholar
Discovery of targets for immune-metabolic antitumor drugs identifies Estrogen Related Receptor Alpha
A. Sahu, Xiao-Man Wang, P. Munson, J. Klomp +28 more
2023Cancer Discovery26 citations Open access
Semantic Scholar
Genomic and transcriptomic analyses identify a prognostic gene signature and predict response to therapy in pleural and peritoneal mesothelioma
N. Nair, Q. Jiang, Jun S. Wei, V. Misra +12 more
2023Cell Reports Medicine22 citations Open access
Semantic Scholar
Chromosome 7 gain compensates for chromosome 10 loss in glioma
N. Nair, A. Schäffer, E. Gertz, Kuo-Yuan Cheng +7 more
2024Cancer Research21 citations
Semantic Scholar
Synthetic lethality across normal tissues is strongly associated with cancer risk, onset, and tumor suppressor specificity
Kuo-Yuan Cheng, N. Nair, J. Lee, E. Ruppin
2021Science Advances18 citations Open access
Semantic Scholar
Low-GPX4 drives a sustained drug-tolerant persister state in TNBC by a targetable adaptive FSP1 upregulation
Nazia Chaudhary, Dibita Mandal, Bhagya Shree Choudhary, S. Patra +25 more
2025Redox Biology13 citations Open access
Semantic Scholar
Study of cell differentiation by phylogenetic analysis using histone modification data
N. Nair, Yu Lin, Ana Manasovska, J. Antić +4 more
2014BMC Bioinformatics13 citations Open access
Semantic Scholar
Charting the transcriptomic landscape of primary and metastatic cancers in relation to their origin and target normal tissues
N. Sanghvi, Camilo Calvo-Alcañiz, P. Rajagopal, S. Scalera +10 more
2023bioRxiv11 citations Open access
Semantic Scholar
Probabilistic partitioning methods to find significant patterns in ChIP-Seq data
N. Nair, Sunil Kumar, B. Moret, P. Bucher
2014Bioinform.11 citations Open access
Semantic Scholar
Persistence of activated anti‐mesothelin hYP218 chimeric antigen receptor T cells in the tumour is associated with efficacy in gastric and colorectal carcinomas
Sameer Mir, A. Venugopalan, Jingli Zhang, N. Nair +5 more
2024Clinical and Translational Medicine10 citations Open access
Semantic Scholar
Metabolic dependency mapping identifies Peroxiredoxin 1 as a driver of resistance to ATM inhibition
Hao-Jian Li, Takashi Furusawa, Renzo Cavero, Yu-Ling Xiao +21 more
2025Redox Biology8 citations
Semantic Scholar
Putative functional genes in idiopathic dilated cardiomyopathy
N. Nair, Avinash Das, U. Amit, Welles Robinson +6 more
2018Scientific Reports8 citations Open access
Semantic Scholar
Re-epithelialization of cancer cells increases autophagy and DNA damage: Implications for breast cancer dormancy and relapse
Diana Drago-Garcia, Suvendu Giri, Rishita Chatterjee, Arturo Simoni-Nieves +38 more
2025Science Signaling7 citations Open access
Semantic Scholar
Path2Omics: Enhanced transcriptomic and methylation prediction accuracy from tumor histopathology
Danh-Tai Hoang, E. Shulman, S. Dhruba, N. Nair +7 more
2025bioRxiv7 citations Open access
Semantic Scholar
Charting the transcriptomic landscape of primary and metastatic cancers in relation to their origin and target normal tissues
N. Sanghvi, Camilo Calvo-Alcañiz, P. Rajagopal, S. Scalera +10 more
2024Science Advances7 citations Open access
Semantic Scholar
Genome-scale metabolic modeling reveals SARS-CoV-2-induced host metabolic reprogramming and identifies metabolic antiviral targets
Kuo-Yuan Cheng, L. Riva, Sanju Sinha, Lipika R. Pal +5 more
20217 citations
Semantic Scholar
Synthetic lethality-based prediction of anti-SARS-CoV-2 targets
Lipika R. Pal, Kuo-Yuan Cheng, N. Nair, Laura Martin-Sancho +8 more
2021bioRxiv7 citations Open access
Semantic Scholar
A maximum-likelihood approach for building cell-type trees by lifting
N. Nair, Laura E. Hunter, Mingfu Shao, Paulina Grnarova +3 more
2016BMC Genomics7 citations Open access
Semantic Scholar
Path2Omics Enhances Transcriptomic and Methylation Prediction Accuracy from Tumor Histopathology
Danh-Tai Hoang, E. Shulman, S. Dhruba, N. Nair +11 more
2025Cancer Research6 citations Open access
Semantic Scholar
The Effect of Population Flow on Epidemic Spread: Analysis and Control
Brooks A. Butler, Ci-Yuan Zhang, I. Walter, N. Nair +2 more
2021IEEE Conference on Decision and Control5 citations
Semantic Scholar
Prediction and Subtyping of Hypertension from Pan-Tissue Transcriptomic and Genetic Analyses
Mahashweta Basu, Mahfuza Sharmin, Avinash Das, N. Nair +5 more
2017Genetics5 citations Open access
Semantic Scholar
Phylogenetic Analysis of Cell Types Using Histone Modifications
N. Nair, Yu Lin, P. Bucher, B. Moret
2013Workshop on Algorithms in Bioinformatics4 citations Open access
Semantic Scholar
Predicting neoadjuvant breast cancer therapy response using BRIDGE from tumor transcriptomics and histopathology.
T. Cantore, D. Hoang, L. Pal, A. Stemmer +17 more
2026Annals of Oncology3 citations Open access
Semantic Scholar
CRISPR-Based Gene Dependency Screens reveal Mechanism of BRAF Inhibitor Resistance in Anaplastic Thyroid Cancer
Shawn Noronha, Yue Liu, Gaga Geneti, Hao-Jian Li +22 more
2025bioRxiv3 citations Open access
Semantic Scholar
Chromosome 7 to the rescue: overcoming chromosome 10 loss in gliomas
N. Nair, A. Schäffer, E. Gertz, Kuo-Yuan Cheng +7 more
2024bioRxiv2 citations Open access
Semantic Scholar
Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues
D. Crawford, Sanju Sinha, N. Nair, B. Ryan +9 more
2021bioRxiv2 citations Open access
Semantic Scholar
A landscape of synergistic drug combinations in non-small-cell lung cancer
N. Nair, P. Greninger, Adam A. Friedman, A. Amzallag +17 more
2021bioRxiv2 citations Open access
Semantic Scholar
Synthetic lethality-based prediction of anti-SARS-CoV-2 targets
Lipika R. Pal, Kuo-Yuan Cheng, N. Nair, Laura Martin-Sancho +8 more
2022iScience1 citations Open access
Semantic Scholar
Transcriptomics based prediction of survival and response to therapy in malignant mesothelioma
N. Nair, Q. Jiang, Jun S. Wei, V. Misra +11 more
2022bioRxiv1 citations Open access
Semantic Scholar
Cross-species identification of cancer-resistance associated genes uncovers their relevance to human cancer risk
N. Nair, Kuo-Yuan Cheng, Lamis Naddaf, E. Sharon +8 more
2021bioRxiv1 citations Open access
Semantic Scholar
Whole exome precision oncology targeting synthetic lethal vulnerabilities across the tumor transcriptome
J. Lee, N. Nair, Lesley M. Chapman, Sanju Sinha +11 more
2020bioRxiv1 citations Open access
Semantic Scholar
Enhanced flux balance analysis to model metabolic networks
N. Nair, Navin Goyal, N. Chandra
2010ACM International Conference on Bioinformatics, Computational Biology and Biomedicine1 citations
Semantic Scholar
Abstract 6127: Hepatic niche driven metabolic-epigenetic reprogramming mediates metastatic colonization through liver progenitor like plasticity
Ajit Kumar Sharma, N. Takahashi, Sophie Zhuang, Amira Kazi +21 more
2026Cancer Research0 citations
Semantic Scholar
Abstract 4145: Genome-wide metabolic modeling identifies key modifiers of precancerous LUSC evolution
N. Sanghvi, T. Cantore, Chi-Ping Day, Sanna Madan +2 more
2026Cancer Research0 citations
Semantic Scholar
CRISPR‐Based Gene Dependency Screens Reveal Mechanism of BRAF Inhibitor Resistance in Anaplastic Thyroid Cancer
Shawn Noronha, Yue Liu, Gaga Geneti, Hao-Jian Li +23 more
2026Molecular Carcinogenesis0 citations Open access
Semantic Scholar
Abstract 3729: A biologically grounded predictor of neoadjuvant breast cancer therapy response from tumor transcriptomics and histopathology
T. Cantore, Danh-Tai Hoang, Lipika Ray, A. Stemmer +13 more
2026Cancer Research0 citations
Semantic Scholar
Hepatobiliary Progenitor-like Reprogramming in Liver Metastases
A. Sharma, N. Takahashi, Yingying Cao, Abhinav Joshi +36 more
2026bioRxiv0 citations Open access
Semantic Scholar
Abstract PS3-04-12: Robust prediction of patients’ response to neoadjuvant therapy across breast cancer subtypes using transcriptomics and histopathology
T. Cantore, D. Hoang, L. Pal, A. Stemmer +8 more
2026Clinical Cancer Research0 citations
Semantic Scholar
A Machine Learning Framework Enables Supervised Treatment Response Prediction from Tumor Transcriptomics across Cancer Types.
L. Pal, E. Gertz, N. Nair, S. Mukherjee +12 more
2026Cancer Research0 citations Open access
Semantic Scholar

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