Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Yoshihiko Tomofuji · SciRah

Researcher profile · Semantic Scholar

Yoshihiko Tomofuji

Share profile

Yoshihiko Tomofuji — researcher profile on SciRah

h-index: 14
Works: 26
Citations: 1,084

Most-cited papers

Fezf2 Orchestrates a Thymic Program of Self-Antigen Expression for Immune Tolerance.
Hiroyuki Takaba, Y. Morishita, Yoshihiko Tomofuji, L. Danks +4 more
2015Cell356 citations Open access
Semantic Scholar
Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease
Yoshihiko Tomofuji, T. Kishikawa, Y. Maeda, K. Ogawa +19 more
2021Annals of the Rheumatic Diseases85 citations Open access
Semantic Scholar
Fibroblasts as a source of self-antigens for central immune tolerance
T. Nitta, Masanori Tsutsumi, Sachiko Nitta, Ryunosuke Muro +7 more
2020Nature Immunology75 citations
Semantic Scholar
Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese
Yoshihiko Tomofuji, Y. Maeda, Eri Oguro-Igashira, T. Kishikawa +14 more
2021Annals of the Rheumatic Diseases69 citations Open access
Semantic Scholar
Asian diversity in human immune cells.
K. Kock, Le-Min Tan, Kyung Yeon Han, Yoshinari Ando +59 more
2025Cell68 citations Open access
Semantic Scholar
ETS1 governs pathological tissue-remodeling programs in disease-associated fibroblasts
Minglu Yan, N. Komatsu, Ryunosuke Muro, Cong-Nhat Huynh Nam +18 more
2022Nature Immunology65 citations
Semantic Scholar
Single-cell analyses and host genetics highlight the role of innate immune cells in COVID-19 severity
R. Edahiro, Y. Shirai, Yusuke Takeshima, S. Sakakibara +450 more
2023Nature Genetics58 citations Open access
Semantic Scholar
Chd4 choreographs self-antigen expression for central immune tolerance
Yoshihiko Tomofuji, Hiroyuki Takaba, Hiroshi I. Suzuki, Rayene Benlaribi +7 more
2020Nature Immunology57 citations
Semantic Scholar
Reconstruction of the personal information from human genome reads in gut metagenome sequencing data
Yoshihiko Tomofuji, K. Sonehara, T. Kishikawa, Y. Maeda +23 more
2023Nature Microbiology41 citations Open access
Semantic Scholar
Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases
Chi Tian, Yun-Tian Zhang, Yihan Tong, K. Kock +30 more
2024Nature Genetics35 citations Open access
Semantic Scholar
SLE stratification based on BAFF and IFN-I bioactivity for biologics and implications of BAFF produced by glomeruli in lupus nephritis
Eri Itotagawa, Yoshihiko Tomofuji, Y. Kato, H. Konaka +14 more
2022Rheumatology35 citations Open access
Semantic Scholar
Quantification of escape from X chromosome inactivation with single-cell omics data reveals heterogeneity across cell types and tissues
Yoshihiko Tomofuji, R. Edahiro, K. Sonehara, Y. Shirai +29 more
2024Cell Genomics32 citations Open access
Semantic Scholar
Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases
Yoshihiko Tomofuji, T. Kishikawa, Y. Maeda, K. Ogawa +28 more
2022Cell Genomics29 citations Open access
Semantic Scholar
Human thymoproteasome variations influence CD8 T cell selection
T. Nitta, Y. Kochi, Ryunosuke Muro, Yoshihiko Tomofuji +6 more
2017Science immunology17 citations
Semantic Scholar
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data
Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, D. McDonald +15 more
2025Nature Communications15 citations Open access
Semantic Scholar
Analysis of gut microbiome, host genetics, and plasma metabolites reveals gut microbiome-host interactions in the Japanese population.
Yoshihiko Tomofuji, T. Kishikawa, K. Sonehara, Y. Maeda +24 more
2023Cell Reports13 citations Open access
Semantic Scholar
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data
Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, D. McDonald +14 more
2024Research Square12 citations Open access
Semantic Scholar
A cross-population compendium of gene–environment interactions
S. Namba, K. Sonehara, Y. Koyanagi, T. Kikuchi +34 more
2026Nature9 citations Open access
Semantic Scholar
Deciphering state-dependent immune features from multi-layer omics data at single-cell resolution
R. Edahiro, Go Sato, Tatsuhiko Naito, Y. Shirai +36 more
2025Nature Genetics9 citations Open access
Semantic Scholar
OMARU: a robust and multifaceted pipeline for metagenome-wide association study
T. Kishikawa, Yoshihiko Tomofuji, H. Inohara, Y. Okada
2022NAR Genomics and Bioinformatics4 citations Open access
Semantic Scholar
Successful treatment of refractory acute lupus haemophagocytic syndrome using rituximab: a case report
Yoshihiko Tomofuji, Y. Ishikawa, K. Hattori, M. Fujiwara +1 more
2020Modern Rheumatology Case Reports4 citations
Semantic Scholar
Association between autoimmune diseases and the gut microbiome.
Yudai Hirano, Yoshihiko Tomofuji, R. Edahiro, T. Kishikawa +2 more
2026International Immunology1 citations
Semantic Scholar
A case of complete atrioventricular block in secondary hemophagocytic syndrome/hemophagocytic lymphohistiocytosis recovered by plasma exchange and cytokine absorbing therapy with AN69ST continuous hemodiafiltration
Y. Harano, Y. Ishikawa, K. Hattori, Mami Ichinose +11 more
2020Immunological Medicine1 citations Open access
Semantic Scholar
Population-scale immune multiome atlas reveals regulatory disease mechanisms.
Masahiro Kanai, T. Delorey, Jarno Honkanen, R. Rodosthenous +37 more
2026Nature0 citations
Semantic Scholar
MP05-19 POLYGENETIC RISK SCORE FOR PROSTATE CANCER IS ASSOCIATED WITH LIPOPOLYSACCHARIDE PATHWAY IN GUT MICROBIOME
K. Hatano, Yoshihiko Tomofuji, M. Matsushita, Toshiki Oka +10 more
2024Journal of Urology0 citations
Semantic Scholar
シングルセル情報とゲノム情報の統合解析によるCOVID-19重症化メカニズムの解明
Edahiro Ryuya, Y. Shirai, Yusuke Takeshima, Shuhei Sakakibara +18 more
2023Proceedings for Annual Meeting of The Japanese Pharmacological Society0 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

K. Sonehara×14
Invite
K. Sonehara — researcher profile on SciRah
Y. Okada×12
Invite
Y. Okada — researcher profile on SciRah
T. Kishikawa×8
Invite
T. Kishikawa — researcher profile on SciRah
Kenichi Yamamoto×8
Invite
Kenichi Yamamoto — researcher profile on SciRah

×6

Invite

D. Motooka — researcher profile on SciRah

Invite

S. Nakamura — researcher profile on SciRah

A. Kumanogoh×6

Invite

A. Kumanogoh — researcher profile on SciRah

H. Takayanagi×5

Invite

H. Takayanagi — researcher profile on SciRah

Invite

Y. Maeda — researcher profile on SciRah

Invite

K. Ogawa — researcher profile on SciRah

Invite

Takuro Nii — researcher profile on SciRah

Tatsusada Okuno×5

Invite

Tatsusada Okuno — researcher profile on SciRah