Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Todd H. Oakley · SciRah

Researcher profile · Semantic Scholar

Todd H. Oakley

University of California Santa Barbara

Share profile

Todd H. Oakley — researcher profile on SciRah

ORCID iD 0000-0002-4478-915XHomepage

h-index: 47
Works: 129
Citations: 9,665

Most-cited papers

The Ecoresponsive Genome of Daphnia pulex
J. Colbourne, M. Pfrender, D. Gilbert, W. Thomas +65 more
2011Science1,250 citations Open access
Semantic Scholar
The Amphimedon queenslandica genome and the evolution of animal complexity
M. Srivastava, O. Simakov, J. Chapman, B. Fahey +29 more
2010Nature1,032 citations Open access
Semantic Scholar
Using Phylogenetic, Functional and Trait Diversity to Understand Patterns of Plant Community Productivity
M. Cadotte, J. Cavender-Bares, D. Tilman, Todd H. Oakley
2009PLoS ONE696 citations Open access
Semantic Scholar
Evolutionary history and the effect of biodiversity on plant productivity
M. Cadotte, B. Cardinale, Todd H. Oakley
2008Proceedings of the National Academy of Sciences of the United States of America631 citations Open access
Semantic Scholar
Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history.
M. Cadotte, T. Jonathan Davies, J. Regetz, S. Kembel +2 more
2010Ecology Letters395 citations
Semantic Scholar
Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny.
Todd H. Oakley, Joanna M. Wolfe, A. Lindgren, Alexander K. Zaharoff
2013Molecular biology and evolution243 citations Open access
Semantic Scholar
Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae.
Anita Narwani, Markos A. Alexandrou, Todd H. Oakley, I. Carroll +1 more
2013Ecology Letters192 citations Open access
Semantic Scholar
Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies
P. Venail, K. Gross, Todd H. Oakley, Anita Narwani +8 more
2015149 citations Open access
Semantic Scholar
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution
A. Tanner, D. Fuchs, Inger Winkelmann, M. Gilbert +8 more
2017Proceedings of the Royal Society of London. Biological Sciences137 citations Open access
Semantic Scholar
Evidence for light perception in a bioluminescent organ
Deyan Tong, Natalia S. Rozas, Todd H. Oakley, Jane Mitchell +2 more
2009Proceedings of the National Academy of Sciences of the United States of America126 citations Open access
Semantic Scholar
A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment
A. Lindgren, M. S. Pankey, F. Hochberg, Todd H. Oakley
2012BMC Evolutionary Biology117 citations Open access
Semantic Scholar
The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
M. Henze, Todd H. Oakley
2015Integrative and Comparative Biology109 citations Open access
Semantic Scholar
The last common ancestor of most bilaterian animals possessed at least 9 opsins
M. Ramirez, Autum N. Pairett, M. S. Pankey, J. Serb +3 more
2016bioRxiv105 citations Open access
Semantic Scholar
Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides
M. Ramirez, Todd H. Oakley
2015Journal of Experimental Biology103 citations Open access
Semantic Scholar
Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae.
Markos A. Alexandrou, B. Swartz, N. Matzke, Todd H. Oakley
2013Molecular Phylogenetics and Evolution98 citations
Semantic Scholar
The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway
David C. Plachetzki, C. Fong, Todd H. Oakley
2010Proceedings of the Royal Society of London. Biological Sciences96 citations Open access
Semantic Scholar
Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin
A. Rivera, Nuri Ozturk, B. Fahey, David C. Plachetzki +3 more
2012Journal of Experimental Biology94 citations Open access
Semantic Scholar
Cnidocyte discharge is regulated by light and opsin-mediated phototransduction
David C. Plachetzki, C. Fong, Todd H. Oakley
2012BMC Biology88 citations Open access
Semantic Scholar
Supplementary Information Appendix for Symbiotic Organs Shaped by Distinct Modes of Genome Evolution in Cephalopods
M. Belcaid, G. Casaburi, Sarah J. McAnulty, H. Schmidbaur +18 more
201982 citations
Semantic Scholar
Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid
M. S. Pankey, V. Minin, Gregory C. Imholte, M. Suchard +1 more
2014Proceedings of the National Academy of Sciences of the United States of America79 citations Open access
Semantic Scholar
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms
D. I. Speiser, M. S. Pankey, Alexander K. Zaharoff, B. Battelle +14 more
2014BMC Bioinformatics77 citations Open access
Semantic Scholar
Multi‐level convergence of complex traits and the evolution of bioluminescence
Emily S Lau, Todd H. Oakley
2020Biological Reviews of The Cambridge Philosophical Society72 citations Open access
Semantic Scholar
High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays.
E. Ellis, Todd H. Oakley
2016Current Biology69 citations Open access
Semantic Scholar
How complexity originates: The evolution of animal eyes
Todd H. Oakley, D. I. Speiser
2015bioRxiv68 citations Open access
Semantic Scholar
Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis.
Keith J. Fritschie, B. Cardinale, Markos A. Alexandrou, Todd H. Oakley
2014Ecology68 citations Open access
Semantic Scholar
The Comb Jelly Opsins and the Origins of Animal Phototransduction
Roberto Feuda, Omar Rota-Stabelli, Todd H. Oakley, D. Pisani
2014Genome Biology and Evolution66 citations Open access
Semantic Scholar
The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment
P. Venail, Anita Narwani, Keith J. Fritschie, Markos A. Alexandrou +2 more
2014Journal of Ecology66 citations Open access
Semantic Scholar
Prolific Origination of Eyes in Cnidaria with Co-option of Non-visual Opsins.
Natasha Picciani, J. R. Kerlin, Noémie C Sierra, Andrew J. M. Swafford +5 more
2018Current Biology61 citations Open access
Semantic Scholar
Understanding the dermal light sense in the context of integrative photoreceptor cell biology
M. Ramirez, D. I. Speiser, M. S. Pankey, Todd H. Oakley
2011Visual Neuroscience60 citations
Semantic Scholar
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods
M. Belcaid, G. Casaburi, Sarah J. McAnulty, H. Schmidbaur +18 more
2019Proceedings of the National Academy of Sciences of the United States of America58 citations Open access
Semantic Scholar
Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach
A. Rivera, M. S. Pankey, David C. Plachetzki, C. Villacorta +4 more
2010BMC Evolutionary Biology57 citations Open access
Semantic Scholar
Evolutionary expansion and specialization of the PDZ domains.
O. Sakarya, C. Conaco, Ö. Eğecioğlu, S. Solla +2 more
2010Molecular biology and evolution51 citations Open access
Semantic Scholar
Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea).
O. Tinn, Todd H. Oakley
2008Molecular Phylogenetics and Evolution49 citations
Semantic Scholar
The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
M. Porter, D. I. Speiser, Alexander K. Zaharoff, R. Caldwell +2 more
2013Integrative and Comparative Biology45 citations
Semantic Scholar
Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods.
A. Syme, Todd H. Oakley
2012Systematic Biology44 citations
Semantic Scholar
Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae
Markos A. Alexandrou, B. Cardinale, John D. Hall, C. Delwiche +6 more
2015Proceedings of the Royal Society of London. Biological Sciences37 citations Open access
Semantic Scholar
Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system
Todd H. Oakley, Markos A. Alexandrou, Roger Ngo, M. S. Pankey +3 more
2014BMC Bioinformatics37 citations Open access
Semantic Scholar
The shell-eyes of the chiton Acanthopleura granulata (Mollusca, Polyplacophora) use pheomelanin as a screening pigment
D. I. Speiser, D. DeMartini, Todd H. Oakley
201435 citations Open access
Semantic Scholar
Ocular and Extraocular Expression of Opsins in the Rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa)
J. Bielecki, Alexander K. Zaharoff, Nicole Y. Leung, A. Garm +1 more
2014PLoS ONE35 citations Open access
Semantic Scholar
Type II Opsins: Evolutionary Origin by Internal Domain Duplication?
Nicholas D. Larusso, Brian E. Ruttenberg, Ambuj K. Singh, Todd H. Oakley
2008Journal of Molecular Evolution35 citations
Semantic Scholar
A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus
B. A. Stahl, Joshua B. Gross, D. I. Speiser, Todd H. Oakley +3 more
2015PLoS ONE34 citations Open access
Semantic Scholar
Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae
Anita Narwani, B. Bentlage, Markos A. Alexandrou, Keith J. Fritschie +3 more
201732 citations Open access
Semantic Scholar
Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes, and their expression in response to symbiont cues
S. Peyer, M. S. Pankey, Todd H. Oakley, M. McFall-Ngai
2013Mechanisms of Development30 citations Open access
Semantic Scholar
Evasion of predators contributes to the maintenance of male eyes in sexually dimorphic Euphilomedes ostracods (Crustacea).
D. I. Speiser, Rebecca I. Lampe, Valerie R. Lovdahl, Brenna Carrillo-Zazueta +2 more
2013Integrative and Comparative Biology26 citations
Semantic Scholar
Genomics and the evolutionary origins of nervous system complexity.
Todd H. Oakley, A. Rivera
2008Current Opinion in Genetics and Development25 citations Open access
Semantic Scholar
Furcation and fusion: The phylogenetics of evolutionary novelty.
Todd H. Oakley
2017Developmental Biology24 citations Open access
Semantic Scholar
Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae
Anita Narwani, Markos A. Alexandrou, J. Herrin, Alaina Vouaux +3 more
2015PLoS ONE23 citations Open access
Semantic Scholar
Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea)
A. Rivera, Todd H. Oakley
2009Evolution & Development22 citations
Semantic Scholar
Multimodal sensorimotor system in unicellular zoospores of a fungus
Andrew J. M. Swafford, Todd H. Oakley
2017Journal of Experimental Biology21 citations Open access
Semantic Scholar
Phylogenetic distance does not predict competition in green algal communities
H. Naughton, Markos A. Alexandrou, Todd H. Oakley, B. Cardinale
201521 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

M. S. Pankey×12
Invite
M. S. Pankey — researcher profile on SciRah
B. Cardinale×9
Invite
B. Cardinale — researcher profile on SciRah
Markos A. Alexandrou×9
Invite
Markos A. Alexandrou — researcher profile on SciRah
D. I. Speiser×8
Invite
D. I. Speiser — researcher profile on SciRah

×6

Invite

Anita Narwani — researcher profile on SciRah

Invite

A. Rivera — researcher profile on SciRah

David C. Plachetzki×5

Invite

David C. Plachetzki — researcher profile on SciRah

Alexander K. Zaharoff×4

Invite

Alexander K. Zaharoff — researcher profile on SciRah

M. McFall-Ngai×4

Invite

M. McFall-Ngai — researcher profile on SciRah

Invite

M. Ramirez — researcher profile on SciRah

Keith J. Fritschie×4

Invite

Keith J. Fritschie — researcher profile on SciRah

Invite

O. Simakov — researcher profile on SciRah