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Shantanu Chowdhury · SciRah

Researcher profile · Semantic Scholar

Shantanu Chowdhury

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Shantanu Chowdhury — researcher profile on SciRah

h-index: 33
Works: 96
Citations: 3,386

Most-cited papers

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, J. Ravindran, Nirmal Kumar +5 more
2006Genome Research322 citations Open access
Semantic Scholar
Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, R. Halder, V. Yadav +5 more
2008Journal of Medicinal Chemistry214 citations
Semantic Scholar
Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements
Sterling Sawaya, A. T. Bagshaw, Emmanuel Buschiazzo, Pankaj Kumar +3 more
2013PLoS ONE179 citations Open access
Semantic Scholar
Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression
Ram Krishna Thakur, Praveen Kumar, Kangkan Halder, Anjali Verma +5 more
2008Nucleic Acids Research174 citations Open access
Semantic Scholar
QuadBase: genome-wide database of G4 DNA—occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
V. Yadav, James Kappukalayil Abraham, P. Mani, R. Kulshrestha +1 more
2007Nucleic Acids Res.143 citations Open access
Semantic Scholar
Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
Anjali Verma, V. Yadav, Richa Basundra, Akinchan Kumar +1 more
2009Nucleic Acids Research133 citations Open access
Semantic Scholar
Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation
N. Beaume, R. Pathak, V. Yadav, Swathi Kota +3 more
2012Nucleic Acids Research99 citations Open access
Semantic Scholar
Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications
A. Mukherjee, Shalu Sharma, Shantanu Chowdhury
2018Trends in Genetics97 citations Open access
Semantic Scholar
DNA damage-induced ephrin-B2 reverse signaling promotes chemoresistance and drives EMT in colorectal carcinoma harboring mutant p53
Sk. Kayum Alam, V. Yadav, S. Bajaj, A. Datta +12 more
2015Cell Death and Differentiation94 citations Open access
Semantic Scholar
Lung cancer biomarkers: State of the art
S. Subramaniam, Ram Krishna Thakur, V. Yadav, R. Nanda +2 more
2013Journal of Carcinogenesis89 citations Open access
Semantic Scholar
QuadBase2: web server for multiplexed guanine quadruplex mining and visualization
Parashar Dhapola, Shantanu Chowdhury
2016Nucleic Acids Res.86 citations Open access
Semantic Scholar
Genome-wide analysis reveals downregulation of miR-379/miR-656 cluster in human cancers
Saurabh V. Laddha, S. Nayak, Deepanjan Paul, R. Reddy +7 more
2013Biology Direct86 citations Open access
Semantic Scholar
Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.
R. Halder, Kangkan Halder, Priyanka R. Sharma, Gaurav Garg +2 more
2010Molecular Biosystems85 citations
Semantic Scholar
Genome-Wide Analyses of Recombination Prone Regions Predict Role of DNA Structural Motif in Recombination
P. Mani, V. Yadav, S. Das, Shantanu Chowdhury
2009PLoS ONE83 citations Open access
Semantic Scholar
Hoechst 33258 binds to G-quadruplex in the promoter region of human c-myc.
S. Maiti, N. Chaudhury, Shantanu Chowdhury
2003Biochemical and Biophysical Research Communications - BBRC75 citations
Semantic Scholar
Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide
Pankaj Kumar, V. Yadav, Aradhita Baral, Parveen Kumar +2 more
2011Nucleic Acids Research66 citations Open access
Semantic Scholar
Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals
Aradhita Baral, Pankaj Kumar, R. Halder, P. Mani +4 more
2012Nucleic Acids Research62 citations Open access
Semantic Scholar
Telomere length-dependent transcription and epigenetic modifications in promoters remote from telomere ends
A. Mukherjee, Shalu Sharma, Suman Sengupta, Dhurjhoti Saha +6 more
2018PLoS Genetics60 citations Open access
Semantic Scholar
Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals.
Kangkan Halder, R. Halder, Shantanu Chowdhury
2009Molecular Biosystems60 citations
Semantic Scholar
Thermodynamics of i-tetraplex formation in the nuclease hypersensitive element of human c-myc promoter.
Vidhi Mathur, Anjali Verma, S. Maiti, Shantanu Chowdhury
2004Biochemical and Biophysical Research Communications - BBRC60 citations
Semantic Scholar
Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex–dependent fashion
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava +6 more
2017Journal of Biological Chemistry54 citations Open access
Semantic Scholar
Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin
Ram Krishna Thakur, V. Yadav, Akinchan Kumar, Ankita Singh +18 more
2014Nucleic Acids Research49 citations Open access
Semantic Scholar
Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex
Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, A. Kar +14 more
2017Scientific Reports48 citations Open access
Semantic Scholar
Genome-wide distribution of histone H4 Lysine 16 acetylation sites and their relationship to gene expression
N. Horikoshi, Pankaj Kumar, G. Sharma, Min Chen +4 more
2013Genome Integrity44 citations Open access
Semantic Scholar
Emerging mechanisms of telomerase reactivation in cancer
Shalu Sharma, Shantanu Chowdhury
2022Trends in Cancer39 citations Open access
Semantic Scholar
Non-duplex G-Quadruplex DNA Structure: A Developing Story from Predicted Sequences to DNA Structure-Dependent Epigenetics and Beyond
Antara Sengupta, S. Roy, Shantanu Chowdhury
2020Accounts of Chemical Research38 citations Open access
Semantic Scholar
ATF3 negatively regulates cellular antiviral signaling and autophagy in the absence of type I interferons
Vikas Sood, Kiran Bala Sharma, Vishal Gupta, Dhurjhoti Saha +7 more
2017Scientific Reports38 citations Open access
Semantic Scholar
Telomere repeat–binding factor 2 binds extensively to extra-telomeric G-quadruplexes and regulates the epigenetic status of several gene promoters
A. Mukherjee, Shalu Sharma, Sulochana Bagri, Rintu Kutum +7 more
2019Journal of Biological Chemistry37 citations Open access
Semantic Scholar
Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter
Kangkan Halder, Shantanu Chowdhury
2005Nucleic Acids Research37 citations Open access
Semantic Scholar
Nucleoside diphosphate kinase from Mycobacterium tuberculosis cleaves single strand DNA within the human c-myc promoter in an enzyme-catalyzed reaction
Praveen Kumar, Anjali Verma, A. Saini, P. Chopra +3 more
2005Nucleic Acids Research37 citations Open access
Semantic Scholar
Molecular basis of recognition of quadruplexes human telomere and c-myc promoter by the putative anticancer agent sanguinarine.
Saptaparni Ghosh, S. Pradhan, A. Kar, Shantanu Chowdhury +1 more
2013Biochimica et Biophysica Acta36 citations
Semantic Scholar
Human telomerase is directly regulated by non-telomeric TRF2-G-quadruplex interaction
Shalu Sharma, A. Mukherjee, S. Roy, Sulochana Bagri +7 more
2021Cell Reports35 citations Open access
Semantic Scholar
Promise of G-Quadruplex Structure Binding Ligands as Epigenetic Modifiers with Anti-Cancer Effects
Antara Sengupta, A. Ganguly, Shantanu Chowdhury
2019Molecules35 citations Open access
Semantic Scholar
Comprehensive SNP Scan of DNA Repair and DNA Damage Response Genes Reveal Multiple Susceptibility Loci Conferring Risk to Tobacco Associated Leukoplakia and Oral Cancer
P. Mondal, Sayantan Datta, Guru P. Maiti, Aradhita Baral +6 more
2013PLoS ONE32 citations Open access
Semantic Scholar
Tetraplex DNA transitions within the human c-myc promoter detected by multivariate curve resolution of fluorescence resonance energy transfer.
Praveen Kumar, Anjali Verma, S. Maiti, R. Gargallo +1 more
2005Biochemistry32 citations
Semantic Scholar
Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells
A. Kar, Dhurjhoti Saha, Gunjan Purohit, Ankita Singh +5 more
2011Nucleic Acids Research29 citations Open access
Semantic Scholar
Mechanisms of non-metastatic 2 (NME2)-mediated control of metastasis across tumor types
Ram Krishna Thakur, V. Yadav, Pankaj Kumar, Shantanu Chowdhury
2011Naunyn-Schmiedeberg's Archives of Pharmacology29 citations
Semantic Scholar
The Candida albicans biofilm gene circuit modulated at the chromatin level by a recent molecular histone innovation
L. Rai, Rima Singha, H. Sanchez, T. Chakraborty +6 more
2019PLoS Biology27 citations Open access
Semantic Scholar
Conformational fluctuations in anthrax protective antigen: a possible role of calcium in the folding pathway of the protein
P. Gupta, H. Chandra, Reetika Gaur, R. Kurupati +4 more
2003FEBS Letters25 citations
Semantic Scholar
Emerging trends in G-quadruplex biology--role in epigenetic and evolutionary events.
Aradhita Baral, Pankaj Kumar, R. Pathak, Shantanu Chowdhury
2013Molecular Biosystems24 citations
Semantic Scholar
A novel G‐quadruplex motif modulates promoter activity of human thymidine kinase 1
Richa Basundra, Akinchan Kumar, S. Amrane, Anjali Verma +2 more
2010The FEBS Journal24 citations
Semantic Scholar
Nuclear Localization and in Situ DNA Damage by Mycobacterium tuberculosis Nucleoside-diphosphate Kinase*
A. Saini, K. Maithal, P. Chand, Shantanu Chowdhury +8 more
2004Journal of Biological Chemistry24 citations Open access
Semantic Scholar
Insights about genome function from spatial organization of the genome
S. Roy, A. Mukherjee, Shantanu Chowdhury
2018Human Genomics23 citations Open access
Semantic Scholar
Inhibition of endoglin-GIPC interaction inhibits pancreatic cancer cell growth
Krishnendu Pal, Alexandre A. Pletnev, S. Dutta, E. Wang +9 more
2014Molecular Cancer Therapeutics23 citations Open access
Semantic Scholar
Quadruplex-duplex competition in the nuclease hypersensitive element of human c-myc promoter: C to T mutation in C-rich strand enhances duplex association.
Kangkan Halder, Vidhi Mathur, D. Chugh, Anjali Verma +1 more
2005Biochemical and Biophysical Research Communications - BBRC23 citations
Semantic Scholar
BLM Potentiates c-Jun Degradation and Alters Its Function as an Oncogenic Transcription Factor.
Raina Priyadarshini, M. Hussain, P. Attri, E. Kaur +7 more
2018Cell Reports22 citations Open access
Semantic Scholar
Ellipticine binds to a human telomere sequence: an additional mode of action as a putative anticancer agent?
Saptaparni Ghosh, A. Kar, Shantanu Chowdhury, D. Dasgupta
2013Biochemistry22 citations
Semantic Scholar
Engineered reversal of drug resistance in cancer cells—metastases suppressor factors as change agents
V. Yadav, Akinchan Kumar, Anita Mann, Suruchi Aggarwal +7 more
2013Nucleic Acids Research21 citations Open access
Semantic Scholar
Quadruplex-coupled kinetics distinguishes ligand binding between G4 DNA motifs.
Kangkan Halder, Shantanu Chowdhury
2007Biochemistry21 citations
Semantic Scholar
Extratelomeric Binding of the Telomere Binding Protein TRF2 at the PCGF3 Promoter Is G-Quadruplex Motif-Dependent.
Gunjan Purohit, Ananda Mukherjee, Shalu Sharma, Shantanu Chowdhury
2018Biochemistry20 citations
Semantic Scholar

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V. Yadav×14
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V. Yadav — researcher profile on SciRah
Dhurjhoti Saha×9
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Dhurjhoti Saha — researcher profile on SciRah
Kangkan Halder×8
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A. Kar×8
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Ram Krishna Thakur

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Ram Krishna Thakur — researcher profile on SciRah

Pankaj Kumar×7

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Pankaj Kumar — researcher profile on SciRah

Shalu Sharma×7

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Shalu Sharma — researcher profile on SciRah

Anjali Verma×6

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Anjali Verma — researcher profile on SciRah

Aradhita Baral×6

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Aradhita Baral — researcher profile on SciRah

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R. Halder — researcher profile on SciRah

Akinchan Kumar×5

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Akinchan Kumar — researcher profile on SciRah

A. Mukherjee×5

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A. Mukherjee — researcher profile on SciRah