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D. Barratt · SciRah

Researcher profile · Semantic Scholar

D. Barratt

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D. Barratt — researcher profile on SciRah

h-index: 39
Works: 201
Citations: 6,635

Most-cited papers

Automatic Multi-organ Segmentation on Abdominal CT with Dense V-networks
E. Gibson, F. Giganti, Yi-Peng Hu, E. Bonmati +6 more
2018IEEE Transactions on Medical Imaging675 citations Open access
Semantic Scholar
Weakly-supervised convolutional neural networks for multimodal image registration
Yi-Peng Hu, M. Modat, E. Gibson, Wenqi Li +10 more
2018Medical Image Anal.454 citations Open access
Semantic Scholar
The SmartTarget Biopsy Trial: A Prospective, Within-person Randomised, Blinded Trial Comparing the Accuracy of Visual-registration and Magnetic Resonance Imaging/Ultrasound Image-fusion Targeted Biopsies for Prostate Cancer Risk Stratification
S. Hamid, Ian A. Donaldson, Yi-Peng Hu, Rachael Rodell +17 more
2019European Urology119 citations Open access
Semantic Scholar
Adversarial Deformation Regularization for Training Image Registration Neural Networks
Yi-Peng Hu, E. Gibson, N. Ghavami, E. Bonmati +5 more
2018International Conference on Medical Image Computing and Computer-Assisted Intervention87 citations Open access
Semantic Scholar
Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration
N. Ghavami, Yi-Peng Hu, E. Gibson, E. Bonmati +3 more
2019Medical Image Anal.66 citations Open access
Semantic Scholar
Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning
E. Gibson, Yi-Peng Hu, N. Ghavami, H. Ahmed +4 more
2018International Conference on Medical Image Computing and Computer-Assisted Intervention63 citations
Semantic Scholar
Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks
E. Gibson, F. Giganti, Yi-Peng Hu, E. Bonmati +6 more
2017International Conference on Medical Image Computing and Computer-Assisted Intervention56 citations
Semantic Scholar
Accuracy of Transperineal Targeted Prostate Biopsies, Visual Estimation and Image Fusion in Men Needing Repeat Biopsy in the PICTURE Trial
L. Simmons, A. Kanthabalan, M. Arya, T. Briggs +12 more
2018Journal of Urology54 citations Open access
Semantic Scholar
DeepReg: a deep learning toolkit for medical image registration
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana +13 more
2020Journal of Open Source Software51 citations Open access
Semantic Scholar
Image quality assessment for machine learning tasks using meta-reinforcement learning
Shaheer U. Saeed, Yunguan Fu, V. Stavrinides, Zachary Michael Cieman Baum +7 more
2022Medical Image Anal.50 citations Open access
Semantic Scholar
Interactive 3D U-net for the segmentation of the pancreas in computed tomography scans
T. Boers, Yi-Peng Hu, Eli Gibson, D. Barratt +5 more
2020Physics in Medicine and Biology44 citations Open access
Semantic Scholar
A hybrid patient‐specific biomechanical model based image registration method for the motion estimation of lungs
Lianghao Han, Hua Dong, J. McClelland, Liang-Xiu Han +2 more
2017Medical Image Anal.43 citations Open access
Semantic Scholar
Real-time multimodal image registration with partial intraoperative point-set data
Zachary Michael Cieman Baum, Yi-Peng Hu, D. Barratt
2021Medical Image Anal.37 citations Open access
Semantic Scholar
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalizing neural network
E. Bonmati, Yi-Peng Hu, Nikhil Sindhwani, H. Dietz +4 more
2017Journal of Medical Imaging37 citations Open access
Semantic Scholar
Deep residual networks for automatic segmentation of laparoscopic videos of the liver
E. Gibson, M. Robu, Stephen A Thompson, P. Edwards +6 more
2017Medical Imaging33 citations Open access
Semantic Scholar
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration
Yi-Wen Li, Yunguan Fu, Iani J. M. B. Gayo, Qian-Ye Yang +11 more
2022Medical Image Anal.30 citations Open access
Semantic Scholar
Integration of spatial information in convolutional neural networks for automatic segmentation of intraoperative transrectal ultrasound images
N. Ghavami, Yi-Peng Hu, E. Bonmati, Rachael Rodell +3 more
2018Journal of Medical Imaging28 citations Open access
Semantic Scholar
Conditional Segmentation in Lieu of Image Registration
Yi-Peng Hu, E. Gibson, D. Barratt, M. Emberton +2 more
2019International Conference on Medical Image Computing and Computer-Assisted Intervention27 citations Open access
Semantic Scholar
Prostate Radiofrequency Focal Ablation (ProRAFT) Trial: A Prospective Development Study Evaluating a Bipolar Radiofrequency Device to Treat Prostate Cancer.
C. Orczyk, D. Barratt, C. Brew-Graves, Yi-Peng Hu +8 more
2020Journal of Urology26 citations Open access
Semantic Scholar
Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker
Qi Li, Zi-Yi Shen, Qian Li, D. Barratt +4 more
2023IEEE Transactions on Biomedical Engineering25 citations Open access
Semantic Scholar
False Positive Multiparametric Magnetic Resonance Imaging Phenotypes in the Biopsy-naïve Prostate: Are They Distinct from Significant Cancer-associated Lesions? Lessons from PROMIS
V. Stavrinides, Tom Syer, Yi-Peng Hu, F. Giganti +26 more
2020European Urology24 citations Open access
Semantic Scholar
Non-rigid Medical Image Registration using Physics-informed Neural Networks
Z. Min, Zachary Michael Cieman Baum, Shaheer U. Saeed, M. Emberton +3 more
2023Information Processing in Medical Imaging22 citations Open access
Semantic Scholar
Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks
N. Ghavami, Yi-Peng Hu, E. Bonmati, Rachael Rodell +3 more
2018Medical Imaging22 citations Open access
Semantic Scholar
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion
Shaheer U. Saeed, Tom Syer, Wen Yan, Qian-Ye Yang +5 more
2023International Conference on Medical Imaging with Deep Learning20 citations Open access
Semantic Scholar
Meta-Learning Initializations for Interactive Medical Image Registration
Zachary Michael Cieman Baum, Yi-Peng Hu, D. Barratt
2022IEEE Transactions on Medical Imaging19 citations Open access
Semantic Scholar
FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning
Yi-Wen Li, Yunguan Fu, Qian-Ye Yang, Z. Min +5 more
2022IEEE International Symposium on Biomedical Imaging17 citations
Semantic Scholar
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality
Qian-Ye Yang, D. Atkinson, Yunguan Fu, Tom Syer +6 more
2022IEEE Transactions on Medical Imaging17 citations Open access
Semantic Scholar
Mapping PSA density to outcome of MRI-based active surveillance for prostate cancer through joint longitudinal-survival models
V. Stavrinides, Georgios Papageorgiou, D. Danks, F. Giganti +12 more
2021Prostate Cancer and Prostatic Diseases17 citations Open access
Semantic Scholar
Learning image quality assessment by reinforcing task amenable data selection
Shaheer U. Saeed, Yunguan Fu, Zachary Michael Cieman Baum, Qian-Ye Yang +5 more
2021Information Processing in Medical Imaging17 citations Open access
Semantic Scholar
Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks
E. Bonmati, Yi-Peng Hu, A. Grimwood, G. Johnson +7 more
2021IEEE Transactions on Medical Imaging16 citations Open access
Semantic Scholar
Image quality assessment for closed-loop computer-assisted lung ultrasound
Zachary Michael Cieman Baum, E. Bonmati, L. Cristoni, A. Walden +7 more
2020Image-Guided Procedures16 citations Open access
Semantic Scholar
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images
João Ramalhinho, M. Robu, Stephen A Thompson, K. Gurusamy +4 more
2018International Journal of Computer Assisted Radiology and Surgery16 citations Open access
Semantic Scholar
The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation
Wen Yan, Qian-Ye Yang, Tom Syer, Z. Min +5 more
2022AMAI@MICCAI15 citations Open access
Semantic Scholar
Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study
Sulaiman Vesal, Iani J. M. B. Gayo, I. Bhattacharya, S. Natarajan +6 more
2022Medical Image Anal.14 citations Open access
Semantic Scholar
Multimodality Biomedical Image Registration using Free Point Transformer Networks
Zachary Michael Cieman Baum, Yi-Peng Hu, D. Barratt
2020ASMUS/PIPPI@MICCAI14 citations Open access
Semantic Scholar
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames
Qi Li, Zi-Yi Shen, Qian Li, D. Barratt +4 more
2022IEEE International Symposium on Biomedical Imaging13 citations
Semantic Scholar
Adaptable image quality assessment using meta-reinforcement learning of task amenability
Shaheer U. Saeed, Yunguan Fu, V. Stavrinides, Zachary Michael Cieman Baum +7 more
2021ASMUS@MICCAI13 citations Open access
Semantic Scholar
Beam distortion due to gold fiducial markers during salvage high‐intensity focused ultrasound in the prostate
Panayiotis Georgiou, J. Jaros, H. Payne, C. Allen +5 more
2017Medical Physics (Lancaster)13 citations Open access
Semantic Scholar
Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity
Zhe Min, Zachary Michael Cieman Baum, Shaheer U. Saeed, M. Emberton +3 more
2024International Conference on Medical Image Computing and Computer-Assisted Intervention12 citations
Semantic Scholar
Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation
Wen Yan, B. Chiu, Zi-Yi Shen, Qian-Ye Yang +7 more
2023Medical Image Anal.12 citations Open access
Semantic Scholar
Active learning using adaptable task-based prioritisation
Shaheer U. Saeed, João Ramalhinho, M. Pinnock, Zi-Yi Shen +8 more
2022Medical Image Anal.12 citations Open access
Semantic Scholar
Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes
Shaheer U. Saeed, Z. Taylor, M. Pinnock, M. Emberton +2 more
2020International Conference on Medical Image Computing and Computer-Assisted Intervention11 citations Open access
Semantic Scholar
Immunohistochemical biomarker validation in highly selective needle biopsy microarrays derived from mpMRI‐characterized prostates
J. Olivier, V. Stavrinides, J. Kay, A. Freeman +21 more
2018The Prostate11 citations Open access
Semantic Scholar
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation
Shaheer U. Saeed, Wen Yan, Yunguan Fu, F. Giganti +8 more
2022Machine Learning for Biomedical Imaging10 citations Open access
Semantic Scholar
Technical Note: Error metrics for estimating the accuracy of needle/instrument placement during transperineal magnetic resonance/ultrasound‐guided prostate interventions
E. Bonmati, Yi-Peng Hu, Barbara Villarini, Rachael Rodell +7 more
2018Medical Physics (Lancaster)10 citations Open access
Semantic Scholar
Prostate cancer segmentation from MRI by a multistream fusion encoder.
Mingjie Jiang, Bao-Hua Yuan, Weixuan Kou, Wen Yan +9 more
2023Medical Physics (Lancaster)9 citations Open access
Semantic Scholar
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification
Alexander Grimwood, H. McNair, Yi-Peng Hu, E. Bonmati +2 more
2020International Conference on Medical Image Computing and Computer-Assisted Intervention9 citations Open access
Semantic Scholar
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures
E. Bonmati, Yi-Peng Hu, E. Gibson, L. Uribarri +6 more
2018International Journal of Computer Assisted Radiology and Surgery9 citations Open access
Semantic Scholar
TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker
Qi Li, Shaheer U. Saeed, Yuliang Huang, Mingyuan Luo +23 more
2025arXiv.org8 citations
Semantic Scholar
Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation
Shaheer U. Saeed, Shi-Qi Huang, João Ramalhinho, Iani J. M. B. Gayo +7 more
2024IEEE Transactions on Pattern Analysis and Machine Intelligence8 citations Open access
Semantic Scholar

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