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James Vlasblom · SciRah

Researcher profile · Semantic Scholar

James Vlasblom

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James Vlasblom — researcher profile on SciRah

h-index: 22
Works: 36
Citations: 6,276

Most-cited papers

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
N. Krogan, G. Cagney, Hai-Yuan Yu, Gouqing Zhong +49 more
2006Nature3,092 citations
Semantic Scholar
A Census of Human Soluble Protein Complexes
P. Havugimana, G. T. Hart, T. Nepusz, Hai-Xuan Yang +20 more
2012Cell850 citations Open access
Semantic Scholar
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia M. Sikorski, Ashwani Kumar, R. Mosca +14 more
2014Nature Biotechnology252 citations Open access
Semantic Scholar
Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae
M. Babu, James Vlasblom, S. Pu, Xinghua Guo +23 more
2012Nature247 citations
Semantic Scholar
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
James Vlasblom, S. Wodak
2009BMC Bioinformatics241 citations Open access
Semantic Scholar
Genomic Architecture of Autism From Comprehensive Whole-Genome Sequence Annotation
B. Trost, B. Thiruvahindrapuram, A. Chan, W. Engchuan +100 more
2022Cell240 citations Open access
Semantic Scholar
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
Brian Turner, S. Razick, A. Turinsky, James Vlasblom +5 more
2010Database J. Biol. Databases Curation217 citations Open access
Semantic Scholar
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
S. Pu, James Vlasblom, A. Emili, J. Greenblatt +1 more
2007Proteomics141 citations
Semantic Scholar
Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways
M. Babu, J. Díaz-Mejía, James Vlasblom, Alla Gagarinova +19 more
2011PLoS Genetics120 citations Open access
Semantic Scholar
Global landscape of cell envelope protein complexes in Escherichia coli
M. Babu, Cedoljub Bundalovic-Torma, C. Calmettes, S. Phanse +34 more
2017Nature Biotechnology119 citations Open access
Semantic Scholar
Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli
M. Babu, R. Arnold, Cedoljub Bundalovic-Torma, Alla Gagarinova +20 more
2014PLoS Genetics111 citations Open access
Semantic Scholar
Protein-protein interaction networks: the puzzling riches.
S. Wodak, James Vlasblom, A. Turinsky, S. Pu
2013Current Opinion in Structural Biology105 citations
Semantic Scholar
Challenges and Rewards of Interaction Proteomics *
S. Wodak, S. Pu, James Vlasblom, B. Séraphin
2009Molecular & Cellular Proteomics98 citations Open access
Semantic Scholar
Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping.
Kamran Rizzolo, Jennifer Huen, Ashwani Kumar, S. Phanse +16 more
2017Cell Reports53 citations Open access
Semantic Scholar
A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals Molecular Determinants of Redox Homeostasis and NF-κB Signaling
Ramy H. Malty, H. Aoki, Ashwani Kumar, S. Phanse +24 more
2017Cell Systems50 citations Open access
Semantic Scholar
Bioinformatics Discovery Note Systems Biology Novel Function Discovery with Genemania: a New Integrated Resource for Gene Function Prediction in Escherichia Coli
James Vlasblom, Khalid Zuberi, Harold Rodriguez, R. Arnold +15 more
48 citations
Semantic Scholar
Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis
M. Moutaoufik, Ramy H. Malty, S. Amin, Qingzhou Zhang +24 more
2019iScience47 citations Open access
Semantic Scholar
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.
Ashwani Kumar, N. Beloglazova, Cedoljub Bundalovic-Torma, S. Phanse +15 more
2016Cell Reports47 citations Open access
Semantic Scholar
Mitochondrial Targets for Pharmacological Intervention in Human Disease
Ramy H. Malty, M. Jessulat, Ke Jin, G. Musso +4 more
2014Journal of Proteome Research46 citations Open access
Semantic Scholar
Local coherence in genetic interaction patterns reveals prevalent functional versatility
S. Pu, Karen Ronen, James Vlasblom, J. Greenblatt +1 more
2008Bioinform.32 citations
Semantic Scholar
Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining
M. Jessulat, Ramy H. Malty, Diem-Hang Nguyen-Tran, Viktor Deineko +17 more
2015Molecular and Cellular Biology24 citations Open access
Semantic Scholar
Extracting high confidence protein interactions from affinity purification data: at the crossroads.
S. Pu, James Vlasblom, A. Turinsky, E. Marcon +6 more
2015Journal of Proteomics22 citations
Semantic Scholar
Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships.
Ke Jin, G. Musso, James Vlasblom, M. Jessulat +14 more
2015Journal of Proteome Research20 citations
Semantic Scholar
Exploring mitochondrial system properties of neurodegenerative diseases through interactome mapping.
James Vlasblom, Ke Jin, Sandy Kassir, M. Babu
2014Journal of Proteomics15 citations
Semantic Scholar
Expanding the Landscape of Chromatin Modification (CM)-Related Functional Domains and Genes in Human
S. Pu, A. Turinsky, James Vlasblom, Tuan On +6 more
2010PLoS ONE13 citations Open access
Semantic Scholar
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks
James Vlasblom, Samuel M. Wu, S. Pu, Mark Superina +3 more
2006Bioinform.11 citations Open access
Semantic Scholar
Bioinformatics Applications Note Systems Biology Orthonets: Simultaneous Visual Analysis of Orthologs and Their Interaction Neighborhoods across Different Organisms
Yan-Qi Hao, Anna Merkoulovitch, James Vlasblom, S. Pu +5 more
7 citations
Semantic Scholar
High-throughput analyses and curation of protein interactions in yeast.
S. Wodak, James Vlasblom, S. Pu
2011Methods in molecular biology6 citations
Semantic Scholar
A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals Molecular Determinants of Redox Homeostasis and NF- κ B Signaling
Ramy H. Malty, H. Aoki, Ashwani Kumar, S. Phanse +28 more
20170 citations
Semantic Scholar
Resource Conditional Epistatic Inter actionMaps Reveal Global Functional Rewiring ofGenome Integrity Pathways in Escherichia coli Graphical
Ashwani Kumar, N. Beloglazova, Cedoljub Bundalovic-Torma, S. Phanse +15 more
20160 citations
Semantic Scholar
OPC server setup manual
Maninder Badial, Kevin Fletcher, James Vlasblom
20150 citations
Semantic Scholar
Spindle Checkpoint Factors Promote NHEJ 1 Spindle Checkpoint Factors Bub 1 and Bub 2 Promote DNA 1 Double Strand Break Repair by Non-Homologous End Joining 2 3
M. Jessulat, Ramy H. Malty, Diem-Hang Nguyen-Tran, Viktor Deineko +20 more
20150 citations
Semantic Scholar
Quantitative and Systems-Based Approaches for Deciphering Bacterial Membrane Interactome and Gene Function.
Viktor Deineko, Ashwani Kumar, James Vlasblom, M. Babu
2015Advances in Experimental Medicine and Biology0 citations
Semantic Scholar
MedSavant : An open source platform for personal genome interpretation
M. Fiume, James Vlasblom, R. Ammar, Orion J. Buske +8 more
20140 citations
Semantic Scholar
A Global Mapping of Protein Complexes in S. cerevisiae
James Vlasblom
20130 citations
Semantic Scholar
Analysis of Genetic Interaction Maps Reveals Functional Pleiotropy
S. Pu, Karen Ronen, James Vlasblom, J. Greenblatt +1 more
20080 citations Open access
Semantic Scholar

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S. Phanse×18
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S. Phanse — researcher profile on SciRah
M. Babu×18
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S. Wodak×16
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A. Emili×13
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J. Greenblatt×12

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Ashwani Kumar×10

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Viktor Deineko×10

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