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V. Koparde · SciRah

Researcher profile · Semantic Scholar

V. Koparde

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V. Koparde — researcher profile on SciRah

h-index: 14
Works: 31
Citations: 1,585

Most-cited papers

The vaginal microbiome and preterm birth
J. Fettweis, M. Serrano, J. Brooks, David J. Edwards +41 more
2019Nature Medicine841 citations Open access
Semantic Scholar
Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
Myrna G. Serrano, Hardik I. Parikh, J. Brooks, David J. Edwards +37 more
2019Nature Medicine275 citations Open access
Semantic Scholar
MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
Hardik I. Parikh, V. Koparde, Steven P. Bradley, G. Buck +1 more
2015BMC Bioinformatics84 citations Open access
Semantic Scholar
Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intra-amniotic infection
Matthew Josiah Allen-Daniels, M. Serrano, Lindsey P. Pflugner, J. Fettweis +9 more
2015American Journal of Obstetrics and Gynecology70 citations Open access
Semantic Scholar
Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.
Abdallah A. Abdelmaksoud, V. Koparde, N. Sheth, M. Serrano +5 more
2016Microbiology67 citations Open access
Semantic Scholar
Unique roles of vaginal Megasphaera phylotypes in reproductive health
A. Glascock, Nicole R. Jimenez, S. Boundy, V. Koparde +7 more
2020bioRxiv33 citations Open access
Semantic Scholar
In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation
M. Jameson-Lee, V. Koparde, P. Griffith, A. Scalora +11 more
2014Frontiers in Immunology31 citations Open access
Semantic Scholar
Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation
J. Sampson, N. Sheth, V. Koparde, A. Scalora +9 more
2014British Journal of Haematology30 citations Open access
Semantic Scholar
Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential In HLA-Matched and Mismatched Donor-Recipient Pairs
Badar Abdul Razzaq, A. Scalora, V. Koparde, Jeremy A. Meier +13 more
2015bioRxiv25 citations Open access
Semantic Scholar
Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence
K. Bradwell, V. Koparde, A. Matveyev, M. Serrano +9 more
2018BMC Genomics23 citations Open access
Semantic Scholar
Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation
V. Koparde, Badar Abdul Razzaq, T. Suntum, R. Sabo +15 more
2016PLoS ONE20 citations Open access
Semantic Scholar
Stem Cell Transplantation as a Dynamical System: Are Clinical Outcomes Deterministic?
A. Toor, Jared D. Kobulnicky, S. Salman, C. Roberts +13 more
2014Frontiers in Immunology17 citations Open access
Semantic Scholar
Sequence homology between HLA-bound cytomegalovirus and human peptides: A potential trigger for alloreactivity
C. Hall, V. Koparde, M. Jameson-Lee, Abdelrhman Elnasseh +8 more
2017PLoS ONE15 citations Open access
Semantic Scholar
Multi-omic Microbiome Profiles in the Female Reproductive Tract in Early Pregnancy
Sophonie Jean, Bernice Huang, Hardik I. Parikh, David J. Edwards +13 more
201914 citations Open access
Semantic Scholar
Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures
V. Koparde, J. N. Scarsdale, G. E. Kellogg
2011PLoS ONE14 citations Open access
Semantic Scholar
Determining the Quantitative Principles of T Cell Response to Antigenic Disparity in Stem Cell Transplantation
Ali Salman, V. Koparde, C. Hall, M. Jameson-Lee +14 more
2018Frontiers in Immunology11 citations Open access
Semantic Scholar
3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information‐rich hydropathic interaction environments described by maps
Mostafa H. Ahmed, V. Koparde, Martin K. Safo, J. N. Scarsdale +1 more
2015Proteins: Structure, Function, and Bioinformatics10 citations
Semantic Scholar
MEEPTOOLS: a maximum expected error based FASTQ read filtering and trimming toolkit
V. Koparde, Hardik I. Parikh, Steven P. Bradley, N. Sheth
2015Int. J. Comput. Biol. Drug Des.9 citations Open access
Semantic Scholar
Determining the Quantitative Principles of T Cell Response to Antigenic Disparity: The Case of Stem Cell Transplant Donor-Recipient Exome Wide Mismatching and HLA Bound Alloreactive Peptides
Ali Salman, V. Koparde, C. Hall, M. Jameson-Lee +11 more
2018bioRxiv1 citations Open access
Semantic Scholar
Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides: Understanding Randomness In Clinical Outcomes Following Stem Cell Transplantation
V. Koparde, B. Abdul Razzaq, T. Suntum, R. Sabo +13 more
2016bioRxiv1 citations Open access
Semantic Scholar
In Silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem Cell Transplant Donor-Recipient Pairs
M. Jameson-Lee, V. Koparde, J. Sampson, A. Scalora +10 more
20141 citations Open access
Semantic Scholar
Towards Predicting Graft Vs Host Disease from Predicted Tissue Specific Minor Histocompatibility Antigens
M. Jameson-Lee, A. Toor, K. Le, V. Koparde +5 more
2018Blood0 citations
Semantic Scholar
Cytomegalovirus Antigenic Mimicry of Human Alloreactive Peptides: Exploring Cross-Reactivity As a Potential Trigger for Graft Versus Host Disease
C. Hall, V. Koparde, M. Jameson-Lee, Abdelrhman Elnasseh +12 more
20170 citations Open access
Semantic Scholar
Whole Exome Sequencing to Determine the Likelihood of Graft Versus Host Disease in Stem Cell Transplant Donor-Recipient Pairs
V. Koparde, Badar Abdul Razzaq, R. Sabo, T. Suntum +14 more
20170 citations Open access
Semantic Scholar
Whole Exome Sequencing and in silico Determination of the Magnitude of Alloreactive Antigen Presentation on HLA DRB1 in Allogeneic Stem Cell Transplant Recipients
Ali Salman, V. Koparde, C. Hall, D. Kobulnicky +7 more
20170 citations Open access
Semantic Scholar
NURF Localizes in Gene Bodies to Regulate mRNA Processing
Joseph Landry, Aiman S Alhazmi, Marissa Mack, Alexander Petencin +6 more
2016The FASEB Journal0 citations Open access
Semantic Scholar
Cytomegalovirus Antigenic Mimicry of Human Alloreactive Peptides: A Potential Trigger for Graft versus Host Disease
C. Hall, V. Koparde, M. Jameson-Lee, Abdelrhman Elnasseh +8 more
2016bioRxiv0 citations Open access
Semantic Scholar
Exome Sequencing Derived Alloreactivity Potential May Predict Gvhd in Allogeneic Stem Cell Transplantation
M. Jameson-Lee, A. Scalora, V. Koparde, D. Kobulnicky +7 more
20150 citations
Semantic Scholar
Peptides Derived from the CMV Proteome Mimic Unique Stem Cell Transplant Recipient Specific Peptides: Possible Role in Eliciting a Pro-Gvh T Cell Response
C. Hall, M. Jameson-Lee, Abdelrhman Elnasseh, V. Koparde +12 more
20150 citations
Semantic Scholar
BOTUX: Bayesian-like operational taxonomic unit examiner
V. Koparde, R. S. Adkins, J. Fettweis, M. Serrano +3 more
2014Int. J. Comput. Biol. Drug Des.0 citations Open access
Semantic Scholar
Whole Exome Sequencing To Estimate Alloreactivity Potential Between Donors and Recipients In Stem Cell Transplantation
J. Sampson, N. Sheth, V. Koparde, A. Scalora +8 more
20130 citations Open access
Semantic Scholar

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