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M. Rupnik · SciRah

Researcher profile · Semantic Scholar

M. Rupnik

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M. Rupnik — researcher profile on SciRah

h-index: 52
Works: 193
Citations: 11K

Most-cited papers

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E. Alm, E. Broberg, T. Connor, Emma B. Hodcroft +496 more
2020Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin199 citations Open access
Semantic Scholar
Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans
C. Knetsch, N. Kumar, S. C. Forster, T. Connor +19 more
2017Journal of Clinical Microbiology128 citations Open access
Semantic Scholar
International Clostridium difficile animal strain collection and large diversity of animal associated strains
Sandra Janežič, Valerija Zidarič, B. Pardon, A. Indra +13 more
2014BMC Microbiology120 citations Open access
Semantic Scholar
An Update on Clostridium difficile Toxinotyping
M. Rupnik, Sandra Janežič
2015Journal of Clinical Microbiology105 citations Open access
Semantic Scholar
Highly Divergent Clostridium difficile Strains Isolated from the Environment
Sandra Janežič, Mojca Potočnik, Valerija Zidarič, M. Rupnik
2016PLoS ONE99 citations Open access
Semantic Scholar
Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread
D. Eyre, K. Davies, G. Davis, W. Fawley +28 more
2018Clinical Infectious Diseases79 citations Open access
Semantic Scholar
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile
S. Bletz, Sandra Janežič, D. Harmsen, M. Rupnik +1 more
2018Journal of Clinical Microbiology77 citations Open access
Semantic Scholar
Non-human C. difficile Reservoirs and Sources: Animals, Food, Environment.
Cristina Rodríguez Díaz, C. Seyboldt, M. Rupnik
2018Advances in Experimental Medicine and Biology77 citations
Semantic Scholar
The SOS Response Master Regulator LexA Is Associated with Sporulation, Motility and Biofilm Formation in Clostridium difficile
Beata M. Walter, Stephen T. Cartman, N. Minton, Matej Butala +1 more
2015PLoS ONE64 citations Open access
Semantic Scholar
Clostridium difficile and Clostridioides difficile: Two validly published and correct names.
A. Oren, M. Rupnik
2018Anaerobe63 citations
Semantic Scholar
Genomic diversity of Clostridium difficile strains.
Sandra Janežič, M. Rupnik
2015Research in Microbiology58 citations Open access
Semantic Scholar
Diversity of the microbiota involved in wine and organic apple cider submerged vinegar production as revealed by DHPLC analysis and next-generation sequencing.
J. Trček, A. Mahnič, M. Rupnik
2016Journal of food microbiology55 citations
Semantic Scholar
Exploring ComQXPA quorum-sensing diversity and biocontrol potential of Bacillus spp. isolates from tomato rhizoplane
A. Oslizlo, P. Stefanic, S. Vatovec, S. Glaser +2 more
2015Microbial Biotechnology51 citations Open access
Semantic Scholar
Sequence Similarity of Clostridium difficile Strains by Analysis of Conserved Genes and Genome Content Is Reflected by Their Ribotype Affiliation
Hedwig Kurka, A. Ehrenreich, W. Ludwig, M. Monot +5 more
2014PLoS ONE51 citations Open access
Semantic Scholar
Highly Protein Repellent and Antiadhesive Polysaccharide Biomaterial Coating for Urinary Catheter Applications.
T. Mohan, A. Cas, Matej Bračič, Olivija Plohl +4 more
2019ACS Biomaterials Science & Engineering50 citations Open access
Semantic Scholar
Dissemination of Clostridium difficile spores between environment and households: Dog paws and shoes
Sandra Janežič, Sabina Mlakar, M. Rupnik
2018Zoonoses and Public Health48 citations
Semantic Scholar
Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort
A. Mahnič, M. Rupnik
2018PLoS ONE47 citations Open access
Semantic Scholar
Clostridium difficile ribotypes in humans and animals in Brazil
R. O. S. Silva, M. Rupnik, Amanda Nádia Diniz, E. Vilela +1 more
2015Memórias do Instituto Oswaldo Cruz45 citations Open access
Semantic Scholar
High Clostridium difficile contamination rates of domestic and imported potatoes compared to some other vegetables in Slovenia.
Valerija Tkalec, Sandra Janežič, Barbara Skok, T. Simonic +3 more
2019Food microbiology43 citations
Semantic Scholar
A point-prevalence study on community and inpatient Clostridioides difficile infections (CDI): results from Combatting Bacterial Resistance in Europe CDI (COMBACTE-CDI), July to November 2018
V. Viprey, G. Davis, A. Benson, D. Ewin +19 more
2022Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin42 citations Open access
Semantic Scholar
The incidence of Clostridioides difficile and Clostridium perfringens netF-positive strains in diarrheic dogs
Amanda Nádia Diniz, F. Coura, M. Rupnik, V. Adams +5 more
2017Anaerobe42 citations Open access
Semantic Scholar
Identification of risk factors influencing Clostridium difficile prevalence in middle-size dairy farms
Petra Bandelj, R. Blagus, France Briski, Olga Frlic +4 more
2016Veterinary Research41 citations Open access
Semantic Scholar
Clostridium difficile and Clostridium perfringens from wild carnivore species in Brazil.
R. O. S. Silva, M. L. D'Elia, Erika Procópio Tostes Teixeira, P. Pereira +7 more
2014Anaerobe40 citations
Semantic Scholar
Evaluation of Human Milk Microbiota by 16S rRNA Gene Next-Generation Sequencing (NGS) and Cultivation/MALDI-TOF Mass Spectrometry Identification
P. Treven, A. Mahnič, M. Rupnik, Majda Golob +3 more
2019Frontiers in Microbiology38 citations Open access
Semantic Scholar
Genomic insights into antibiotic resistance and mobilome of lactic acid bacteria and bifidobacteria
Vita Rozman, Petra Mohar-Lorbeg, P. Treven, T. Accetto +3 more
2023Life Science Alliance37 citations Open access
Semantic Scholar
Surface-layer (S-layer) of human and animal Clostridium difficile strains and their behaviour in adherence to epithelial cells and intestinal colonization.
P. Spigaglia, Amira Barketi-Klai, A. Collignon, P. Mastrantonio +4 more
2013Journal of Medical Microbiology36 citations Open access
Semantic Scholar
High prevalence of nontoxigenic Clostridium difficile isolated from hospitalized and non-hospitalized individuals in rural Ghana.
I. Janssen, P. Cooper, K. Gunka, M. Rupnik +3 more
2016International Journal of Medical Microbiology35 citations
Semantic Scholar
The LexA regulated genes of the Clostridium difficile
Beata M. Walter, M. Rupnik, Vesna Hodnik, G. Anderluh +4 more
2014BMC Microbiology35 citations Open access
Semantic Scholar
The Detection Rate of Enteric Viruses and Clostridium difficile in a Waste Water Treatment Plant Effluent
A. Steyer, I. Gutiérrez-Aguirre, N. Rački, Sara Beigot Glaser +6 more
2015Food and Environmnetal Virology34 citations
Semantic Scholar
Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either Enterobacteriaceae or Enterococcus
A. Mahnič, M. Breskvar, S. Džeroski, P. Skok +2 more
2020Frontiers in Microbiology33 citations Open access
Semantic Scholar
A New Type of Toxin A-Negative, Toxin B-Positive Clostridium difficile Strain Lacking a Complete tcdA Gene
Sandra Janežič, M. Marín, Adoración Martín, M. Rupnik
2014Journal of Clinical Microbiology33 citations Open access
Semantic Scholar
Development and Implementation of Whole Genome Sequencing-Based Typing Schemes for Clostridioides difficile
Sandra Janežič, M. Rupnik
2019Frontiers in Public Health32 citations Open access
Semantic Scholar
Isolation and characterization of Clostridium difficile from pet dogs in Assam, India.
I. Hussain, R. Sharma, P. Borah, S. Rajkhowa +7 more
2015Anaerobe32 citations
Semantic Scholar
Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia – A Comparative Multi-Center Cross-Sectional Study
Mwanaisha Seugendo, I. Janssen, Vanessa Lang, I. Hasibuan +14 more
2018Frontiers in Microbiology30 citations Open access
Semantic Scholar
Interactions Between Clostridioides difficile and Fecal Microbiota in in Vitro Batch Model: Growth, Sporulation, and Microbiota Changes
Sabina Horvat, M. Rupnik
2018Frontiers in Microbiology28 citations Open access
Semantic Scholar
Gut Microbiome Composition in Patients with Chronic Urticaria: A Review of Current Evidence and Data
Mirela Krišto, Liborija Lugović-Mihić, M. Muñoz, M. Rupnik +5 more
2023Life27 citations Open access
Semantic Scholar
Identification of novel, cryptic Clostridioides species isolates from environmental samples collected from diverse geographical locations
C. Williamson, Nathan E. Stone, Amalee E. Nunnally, C. Roe +8 more
2022Microbial Genomics27 citations Open access
Semantic Scholar
Comparison Between Cultivation and Sequencing Based Approaches for Microbiota Analysis in Swabs and Biopsies of Chronic Wounds
A. Mahnič, V. Breznik, Maja Bombek Ihan, M. Rupnik
2020bioRxiv26 citations Open access
Semantic Scholar
Molecular characteristics of Clostridium difficile isolates from human and animals in the North Eastern region of India.
I. Hussain, P. Borah, R. Sharma, S. Rajkhowa +8 more
2016Molecular and Cellular Probes26 citations
Semantic Scholar
Analysis of seed-associated bacteria and fungi on staple crops using the cultivation and metagenomic approaches
Valerija Tkalec, A. Mahnič, P. Gselman, M. Rupnik
2022Folia Microbiologica (Prague)25 citations Open access
Semantic Scholar
Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity
A. Mahnič, Jennifer M. Auchtung, Nataša Poklar Ulrih, R. Britton +1 more
2020Scientific Reports25 citations Open access
Semantic Scholar
Clinical epidemiology of Clostridium difficile infection among hospitalized patients with antibiotic-associated diarrhea in a university hospital of Brazil.
Guilherme Grossi Lopes Cançado, R. O. Silveira Silva, M. Rupnik, Amanda Pontes Nader +5 more
2018Anaerobe25 citations
Semantic Scholar
Carriage of Clostridium difficile in free-living South American coati (Nasua nasua) in Brazil.
R. O. S. Silva, Lara Ribeiro de Almeida, C. Oliveira, D. F. de Magalhães Soares +3 more
2014Anaerobe25 citations
Semantic Scholar
Comparative genomics of Clostridioides difficile toxinotypes identifies module-based toxin gene evolution
Sandra Janežič, K. Dingle, J. W. Alvin, T. Accetto +4 more
2020Microbial Genomics24 citations Open access
Semantic Scholar
Ribotype Classification of Clostridioides difficile Isolates Is Not Predictive of the Amino Acid Sequence Diversity of the Toxin Virulence Factors TcdA and TcdB
Zhenghui Li, Kwok-Leung Lee, Urvi Rajyaguru, C. H. Jones +4 more
2020Frontiers in Microbiology24 citations Open access
Semantic Scholar
Low overlap between carbapenem resistant Pseudomonas aeruginosa genotypes isolated from hospitalized patients and wastewater treatment plants
Andrej Golle, Sandra Janežič, M. Rupnik
2017PLoS ONE23 citations Open access
Semantic Scholar
Distribution of Clostridium difficile PCR ribotypes and high proportion of 027 and 176 in some hospitals in four South Eastern European countries.
M. Rupnik, Arjana Tambić Andrašević, Elena Trajkovska Dokic, Ivanka Matas +4 more
2016Anaerobe23 citations
Semantic Scholar
Clostridium difficile in goats and sheep in Slovenia: characterisation of strains and evidence of age-related shedding.
Jana Avberšek, T. Pirš, M. Pate, M. Rupnik +1 more
2014Anaerobe23 citations
Semantic Scholar
Broad host range may be a key to long-term persistence of bacteriophages infecting intestinal Bacteroidaceae species
Stina Hedžet, M. Rupnik, T. Accetto
2022Scientific Reports21 citations Open access
Semantic Scholar
A MLST Clade 2 Clostridium difficile strain with a variant TcdB induces severe inflammatory and oxidative response associated with mucosal disruption.
C. L. Costa, Diana López-Ureña, Thiago de Oliveira Assis, R. Ribeiro +11 more
2016Anaerobe21 citations Open access
Semantic Scholar

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