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A. Kondrashov · SciRah

Researcher profile · Semantic Scholar

A. Kondrashov

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A. Kondrashov — researcher profile on SciRah

h-index: 50
Works: 152
Citations: 24K

Most-cited papers

A method and server for predicting damaging missense mutations
I. Adzhubei, S. Schmidt, L. Peshkin, V. Ramensky +4 more
2010Nature Methods13K citations Open access
Semantic Scholar
Local fitness landscape of the green fluorescent protein
K. Sarkisyan, D. Bolotin, Margarita V. Meer, D. R. Usmanova +17 more
2016Nature650 citations Open access
Semantic Scholar
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
J. Flot, Boris Hespeels, Xiang Li, B. Noël +36 more
2013Nature362 citations Open access
Semantic Scholar
Coevolution of costly mate choice and condition-dependent display of good genes
D. Houle, A. Kondrashov
2002Proceedings of the Royal Society of London. Series B: Biological Sciences223 citations Open access
Semantic Scholar
Role of selection in fixation of gene duplications.
F. Kondrashov, A. Kondrashov
2006Journal of Theoretical Biology206 citations
Semantic Scholar
The extended evolutionary synthesis and the role of soft inheritance in evolution
T. E. Dickins, Q. Rahman, P. Collignon, A. Mather +115 more
2012Proceedings of the Royal Society of London. Biological Sciences150 citations Open access
Semantic Scholar
SYMPATRIC SPECIATION BY SEXUAL SELECTION ALONE IS UNLIKELY
Matthew E. Arnegard, A. Kondrashov
2004Evolution; international journal of organic evolution142 citations
Semantic Scholar
Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus
N. Terekhanova, M. Logacheva, A. Penin, T. Neretina +4 more
2014PLoS Genetics141 citations Open access
Semantic Scholar
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
O. Gusev, Yoshitaka Suetsugu, R. Cornette, T. Kawashima +24 more
2014Nature Communications133 citations Open access
Semantic Scholar
Paratrypanosoma is a novel early-branching trypanosomatid.
P. Flegontov, J. Votýpka, T. Skalický, M. Logacheva +7 more
2013Current Biology109 citations Open access
Semantic Scholar
Measurements of spontaneous rates of mutations in the recent past and the near future
F. Kondrashov, A. Kondrashov
2010Philosophical Transactions of the Royal Society B: Biological Sciences105 citations Open access
Semantic Scholar
Context of deletions and insertions in human coding sequences
A. Kondrashov, I. Rogozin
2004Human Mutation92 citations Open access
Semantic Scholar
Negative selection in humans and fruit flies involves synergistic epistasis
M. Sohail, O. Vakhrusheva, J. Sul, S. Pulit +8 more
2016Science90 citations Open access
Semantic Scholar
Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness
Margarita V. Meer, A. Kondrashov, Yael A. Artzy-Randrup, F. Kondrashov
2010Nature87 citations
Semantic Scholar
Distribution of the strength of selection against amino acid replacements in human proteins.
L. Yampolsky, F. Kondrashov, A. Kondrashov
2005Human Molecular Genetics87 citations Open access
Semantic Scholar
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences
E. V. Leushkin, R. Sutormin, E. Nabieva, A. Penin +2 more
2013BMC Genomics80 citations Open access
Semantic Scholar
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes.
J. C. Silva, S. Shabalina, David G. Harris, J. Spouge +1 more
2003Genetical research76 citations Open access
Semantic Scholar
Positive selection at sites of multiple amino acid replacements since rat–mouse divergence
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev +1 more
2004Nature74 citations
Semantic Scholar
ACCUMULATION OF DOBZHANSKY‐MULLER INCOMPATIBILITIES WITHIN A SPATIALLY STRUCTURED POPULATION
A. Kondrashov
2003Evolution; international journal of organic evolution74 citations
Semantic Scholar
Bioinformatical assay of human gene morbidity.
F. Kondrashov, A. Ogurtsov, A. Kondrashov
2004Nucleic Acids Research73 citations Open access
Semantic Scholar
Patterns in spontaneous mutation revealed by human-baboon sequence comparison.
J. C. Silva, A. Kondrashov
2002Trends in Genetics67 citations
Semantic Scholar
OWEN: aligning long collinear regions of genomes
A. Ogurtsov, M. Roytberg, S. Shabalina, A. Kondrashov
2002Bioinform.67 citations Open access
Semantic Scholar
Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
Raquel Assis, A. Kondrashov
2009Proceedings of the National Academy of Sciences of the United States of America66 citations Open access
Semantic Scholar
Indel-based evolutionary distance and mouse-human divergence.
A. Ogurtsov, S. Sunyaev, A. Kondrashov
2004Genome Research66 citations Open access
Semantic Scholar
A Low Genomic Number of Recessive Lethals in Natural Populations of Bluefin Killifish and Zebrafish
A. McCune, R. Fuller, AL Aquilina, R. Dawley +4 more
2002Science65 citations
Semantic Scholar
Transcriptome‐based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection
S. Naumenko, M. Logacheva, N. Popova, A. V. Klepikova +6 more
2017Molecular Ecology63 citations Open access
Semantic Scholar
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites.
F. Kondrashov, A. Ogurtsov, A. Kondrashov
2006Journal of Theoretical Biology61 citations
Semantic Scholar
Nested genes and increasing organizational complexity of metazoan genomes
Raquel Assis, A. Kondrashov, E. Koonin, F. Kondrashov
2008Trends in Genetics58 citations Open access
Semantic Scholar
Classification of common conserved sequences in mammalian intergenic regions.
A. Kondrashov, S. Shabalina
2002Human Molecular Genetics58 citations
Semantic Scholar
Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga
O. Vakhrusheva, E. Mnatsakanova, Y. Galimov, T. Neretina +11 more
2020Nature Communications55 citations Open access
Semantic Scholar
Analysis of internal loops within the RNA secondary structure in almost quadratic time
A. Ogurtsov, S. Shabalina, A. Kondrashov, M. Roytberg
2006Bioinform.49 citations Open access
Semantic Scholar
Intrasubtype Reassortments Cause Adaptive Amino Acid Replacements in H3N2 Influenza Genes
A. Neverov, Ksenia V. Lezhnina, A. Kondrashov, G. Bazykin
2014PLoS Genetics47 citations Open access
Semantic Scholar
High‐quality genome assembly of Capsella bursa‐pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution
A. Kasianov, A. V. Klepikova, I. Kulakovskiy, Evgeny S. Gerasimov +5 more
2017The Plant Journal45 citations
Semantic Scholar
Extraordinary Genetic Diversity in a Wood Decay Mushroom
M. Baranova, M. Logacheva, A. Penin, V. Seplyarskiy +7 more
2015Molecular biology and evolution45 citations Open access
Semantic Scholar
Heterogeneity of the transition/transversion ratio in Drosophila and Hominidae genomes.
V. Seplyarskiy, P. Kharchenko, A. Kondrashov, G. Bazykin
2012Molecular biology and evolution40 citations Open access
Semantic Scholar
Measuring spontaneous deleterious mutation process
A. Kondrashov
2004Genetica39 citations
Semantic Scholar
Hypermutable Non-Synonymous Sites Are under Stronger Negative Selection
S. Schmidt, A. Gerasimova, F. Kondrashov, Ivan A. Adzuhbei +2 more
2008PLoS Genetics35 citations Open access
Semantic Scholar
Extensive parallelism in protein evolution
G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov +2 more
2007Biology Direct34 citations Open access
Semantic Scholar
Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites
G. Bazykin, J. Dushoff, S. Levin, A. Kondrashov
2006Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Strong Mutational Bias Toward Deletions in the Drosophila melanogaster Genome Is Compensated by Selection
E. V. Leushkin, G. Bazykin, A. Kondrashov
2013Genome Biology and Evolution29 citations Open access
Semantic Scholar
Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area
N. Terekhanova, A. Barmintseva, A. Kondrashov, G. Bazykin +1 more
2019Genome Biology and Evolution28 citations Open access
Semantic Scholar
Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs.
J. Bernat, Gregory E. Crawford, A. Ogurtsov, F. Collins +2 more
2006Human Molecular Genetics26 citations Open access
Semantic Scholar
Prevalence of Multinucleotide Replacements in Evolution of Primates and Drosophila
N. Terekhanova, G. Bazykin, A. Neverov, A. Kondrashov +1 more
2013Molecular biology and evolution24 citations Open access
Semantic Scholar
Through Sex, Nature Is Telling Us Something Important.
A. Kondrashov
2018Trends in Genetics23 citations
Semantic Scholar
Fitness conferred by replaced amino acids declines with time
S. Naumenko, A. Kondrashov, G. Bazykin
2012Biology Letters23 citations Open access
Semantic Scholar
Conserved proteins are fragile.
Raquel Assis, A. Kondrashov
2014Molecular biology and evolution20 citations Open access
Semantic Scholar
Insertions and deletions trigger adaptive walks in Drosophila proteins
E. V. Leushkin, G. Bazykin, A. Kondrashov
2012Proceedings of the Royal Society of London. Biological Sciences20 citations Open access
Semantic Scholar
Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs.
S. Shabalina, A. Ogurtsov, D. Lipman, A. Kondrashov
2003Nucleic Acids Research20 citations Open access
Semantic Scholar
Crumbling Genome: The Impact of Deleterious Mutations on Humans
A. Kondrashov
201719 citations
Semantic Scholar
Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages
E. V. Leushkin, M. Logacheva, A. Penin, R. Sutormin +6 more
2015BMC Genomics18 citations Open access
Semantic Scholar

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M. Logacheva×10
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