E. Davidson

Most-cited papers

Direct multiplexed measurement of gene expression with color-coded probe pairs
G. Geiss, Roger E Bumgarner, B. Birditt, T. Dahl +17 more
2008Nature Biotechnology2,075 citations
Semantic Scholar
Emerging properties of animal gene regulatory networks
E. Davidson
2010Nature603 citations Open access
Semantic Scholar
The evolution of hierarchical gene regulatory networks
D. Erwin, E. Davidson
2009Nature reviews genetics476 citations Open access
Semantic Scholar
Global regulatory logic for specification of an embryonic cell lineage
P. Oliveri, Q. Tu, E. Davidson
2008Proceedings of the National Academy of Sciences of the United States of America393 citations Open access
Semantic Scholar
Evolution of Gene Regulatory Networks that Control Embryonic Development of the Body Plan
I. S. Peter, E. Davidson
2011Cell378 citations Open access
Semantic Scholar
Properties of developmental gene regulatory networks
E. Davidson, M. Levine
2008Proceedings of the National Academy of Sciences of the United States of America240 citations Open access
Semantic Scholar
A gene regulatory network controlling the embryonic specification of endoderm
I. S. Peter, E. Davidson
2011Nature232 citations Open access
Semantic Scholar
Mapping a multiplexed zoo of mRNA expression
Harry M. T. Choi, C. R. Calvert, Naeem Husain, D. Huss +25 more
2016Development224 citations Open access
Semantic Scholar
Sponge grade body fossil with cellular resolution dating 60 Myr before the Cambrian
Z. Yin, Mao-Yan Zhu, E. Davidson, D. Bottjer +2 more
2015Proceedings of the National Academy of Sciences of the United States of America209 citations Open access
Semantic Scholar
Predictive computation of genomic logic processing functions in embryonic development
I. S. Peter, Emmanuel Faure, E. Davidson
2012Proceedings of the National Academy of Sciences of the United States of America180 citations Open access
Semantic Scholar
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
Q. Tu, R. Cameron, K. Worley, R. Gibbs +1 more
2012Genome Research171 citations Open access
Semantic Scholar
Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution
F. Gao, E. Davidson
2008Proceedings of the National Academy of Sciences of the United States of America161 citations Open access
Semantic Scholar
The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage
I. S. Peter, E. Davidson
2009Developmental Biology156 citations Open access
Semantic Scholar
Visualization, documentation, analysis, and communication of large scale gene regulatory networks
W. Longabaugh, E. Davidson, H. Bolouri
2008Biochimica et Biophysica Acta120 citations Open access
Semantic Scholar
A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo
Yi-Hsien Su, E. Li, G. Geiss, W. Longabaugh +2 more
2009Developmental Biology109 citations Open access
Semantic Scholar
High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development
Stefan C. Materna, J. Nam, E. Davidson
2010Gene Expression Patterns103 citations Open access
Semantic Scholar
Transphyletic conservation of developmental regulatory state in animal evolution
J. Royo, I. Maeso, M. Irimia, F. Gao +7 more
2011Proceedings of the National Academy of Sciences of the United States of America102 citations Open access
Semantic Scholar
Modeling the dynamics of transcriptional gene regulatory networks for animal development
S. de-Leon, E. Davidson
2008Developmental Biology97 citations Open access
Semantic Scholar
A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos
Stefan C. Materna, E. Davidson
2012Developmental Biology94 citations Open access
Semantic Scholar
Assessing regulatory information in developmental gene regulatory networks
I. S. Peter, E. Davidson
2017Proceedings of the National Academy of Sciences of the United States of America89 citations Open access
Semantic Scholar
Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo
M. Cui, Natnaree Siriwon, E. Li, E. Davidson +1 more
2014Proceedings of the National Academy of Sciences of the United States of America82 citations Open access
Semantic Scholar
Genomic Control Process: Development and Evolution
I. S. Peter, E. Davidson
201579 citations
Semantic Scholar
Diversification of Oral and Aboral Mesodermal Regulatory States in Pregastrular Sea Urchin Embryos
Stefan C. Materna, A. Ransick, E. Li, E. Davidson
2012Developmental Biology79 citations Open access
Semantic Scholar
Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses
Eric M. Erkenbrack, E. Davidson
2015Proceedings of the National Academy of Sciences of the United States of America73 citations Open access
Semantic Scholar
NETWORK DESIGN PRINCIPLES FROM THE SEA URCHIN EMBRYO
E. Davidson
2009Current Opinion in Genetics and Development69 citations Open access
Semantic Scholar
Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo
E. Li, M. Cui, I. S. Peter, E. Davidson
2014Proceedings of the National Academy of Sciences of the United States of America66 citations Open access
Semantic Scholar
Gene Regulatory Control in the Sea Urchin Aboral Ectoderm: Spatial Initiation, Signaling Inputs, and Cell Fate Lockdown
S. de-Leon, Yi-Hsien Su, Kuan-Ting Lin, E. Li +1 more
2012Developmental Biology66 citations Open access
Semantic Scholar
Boveri's long experiment: sea urchin merogones and the establishment of the role of nuclear chromosomes in development.
M. Laubichler, E. Davidson
2008Developmental Biology66 citations Open access
Semantic Scholar
The gene regulatory network basis of the “community effect,” and analysis of a sea urchin embryo example
H. Bolouri, E. Davidson
2009Developmental Biology65 citations Open access
Semantic Scholar
Functional cis-regulatory genomics for systems biology
J. Nam, P. Dong, Ryan Tarpine, S. Istrail +1 more
2010Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
Information processing at the foxa node of the sea urchin endomesoderm specification network
S. de-Leon, E. Davidson
2010Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo.
Joel W. S. Smith, E. Kraemer, Hongdau Liu, Christina Theodoris +1 more
2008Developmental Biology63 citations Open access
Semantic Scholar
Evolutionary innovation and stability in animal gene networks.
E. Davidson, D. Erwin
2009Journal of Experimental Zoology Part B: Molecular and Developmental Evolution58 citations
Semantic Scholar
Reorganization of sea urchin gene regulatory networks at least 268 million years ago as revealed by oldest fossil cidaroid echinoid
Jeffrey R. Thompson, E. Petsios, E. Davidson, Eric M. Erkenbrack +2 more
2015Scientific Reports56 citations Open access
Semantic Scholar
Cis-regulatory logic driving glial cells missing: self-sustaining circuitry in later embryogenesis
A. Ransick, E. Davidson
2012Developmental Biology56 citations Open access
Semantic Scholar
Phase contrast synchrotron X-ray microtomography of Ediacaran (Doushantuo) metazoan microfossils: Phylogenetic diversity and evolutionary implications
Jun-Yuan Chen, D. Bottjer, E. Davidson, Gang Li +8 more
200956 citations
Semantic Scholar
Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo
E. Li, Stefan C. Materna, E. Davidson
2012Developmental Biology54 citations Open access
Semantic Scholar
NEW REGULATORY CIRCUIT CONTROLLING SPATIAL AND TEMPORAL GENE EXPRESSION IN THE SEA URCHIN EMBRYO ORAL ECTODERM GRN
E. Li, Stefan C. Materna, E. Davidson
2013Developmental Biology49 citations Open access
Semantic Scholar
An integrated view of precambrian eumetazoan evolution.
E. Davidson, D. Erwin
2009Cold Spring Harbor Symposia on Quantitative Biology46 citations Open access
Semantic Scholar
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus
S. Damle, E. Davidson
2011Developmental Biology43 citations Open access
Semantic Scholar
Evolution of Developmental Control Mechanisms Juvenile skeletogenesis in anciently diverged sea urchin clades
F. Gao, Jeffrey R. Thompson, E. Petsios, Eric M. Erkenbrack +3 more
201541 citations
Semantic Scholar
EVOLUTIONARY BIOSCIENCE AS REGULATORY SYSTEMS BIOLOGY
E. Davidson
2011Developmental Biology40 citations Open access
Semantic Scholar
Building Developmental Gene Regulatory Networks
E. Li, E. Davidson
2009Birth Defects Research Part C Embryo Today Reviews39 citations Open access
Semantic Scholar
Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring
Joel W. S. Smith, E. Davidson
2009Proceedings of the National Academy of Sciences of the United States of America37 citations Open access
Semantic Scholar
Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology.
I. S. Peter, E. Davidson
2016Current Topics in Developmental Biology36 citations
Semantic Scholar
The cis-regulatory system of the tbrain gene: alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo
Mary Wahl, J. Hahn, Kasia G. Gora, E. Davidson +1 more
2009Developmental Biology35 citations Open access
Semantic Scholar
Barcoded DNA-Tag Reporters for Multiplex Cis-Regulatory Analysis
J. Nam, E. Davidson
2012PLoS ONE32 citations Open access
Semantic Scholar
Genomic control of patterning
I. S. Peter, E. Davidson
2009International Journal of Developmental Biology32 citations Open access
Semantic Scholar
Geometric control of ciliated band regulatory states in the sea urchin embryo
Julius C. Barsi, E. Li, E. Davidson
2015Development31 citations Open access
Semantic Scholar
General approach for in vivo recovery of cell type-specific effector gene sets
Julius C. Barsi, Q. Tu, E. Davidson
2014Genome Research30 citations Open access
Semantic Scholar