Shantanu Jain

Most-cited papers

Estimating the class prior and posterior from noisy positives and unlabeled data
Shantanu Jain, Martha White, P. Radivojac
2016Neural Information Processing Systems135 citations
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Deciphering the impact of genomic variation on function
Jesse M. Heather A. Harinder Lea M. Gary C. Hannah Nidhi Engreitz Lawson Singh Starita Hon Carter Sahni Red, Jesse M. Heather A. Harinder Lea M. Gary C. Hannah Nidhi Engreitz Lawson Singh Starita Hon Carter Sahni Red, Jesse M. Engreitz, Heather A. Lawson +496 more
2024Nature94 citations Open access
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Nonparametric semi-supervised learning of class proportions
Shantanu Jain, Martha White, M. Trosset, P. Radivojac
2016arXiv.org62 citations
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Recovering True Classifier Performance in Positive-Unlabeled Learning
Shantanu Jain, Martha White, P. Radivojac
2017AAAI Conference on Artificial Intelligence56 citations Open access
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Fast Nonparametric Estimation of Class Proportions in the Positive-Unlabeled Classification Setting
Daniel Zeiberg, Shantanu Jain, P. Radivojac
2020AAAI Conference on Artificial Intelligence24 citations Open access
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The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease
J. Lugo-Martinez, V. Pejaver, K. Pagel, Shantanu Jain +4 more
2016PLoS Comput. Biol.23 citations Open access
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Estimating classification accuracy in positive-unlabeled learning: characterization and correction strategies
R. Ramola, Shantanu Jain, P. Radivojac
2018Pacific Symposium on Biocomputing17 citations Open access
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Class Prior Estimation with Biased Positives and Unlabeled Examples
Shantanu Jain, Justin Delano, Himanshu Sharma, P. Radivojac
2020AAAI Conference on Artificial Intelligence16 citations Open access
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New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics
Yi-Su Peng, Shantanu Jain, Yong-Fu-Ga Li, M. Greguš +3 more
2020Bioinform.14 citations Open access
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Gene-based calibration of high-throughput functional assays for clinical variant classification
Daniel Zeiberg, Ross Stewart, Shantanu Jain, Malvika Tejura +10 more
2025bioRxiv7 citations
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Real Time Face Recognition Based Attendance System using Multi Task Cascaded Convolutional Neural Network
Vrushaket Chaudhari, Shantanu Jain, Rushikesh R. Chaudhari, Tanvesh Chavan +1 more
20232023 International Conference on Emerging Smart Computing and Informatics (ESCI)7 citations
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The IGVF catalog—from genetic variation to function
Dao-Feng Li, Sha-Ne Liu, Pedro Assis, Mingjie Li +43 more
2025Nucleic Acids Research6 citations Open access
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A scalable approach to resolving variants of uncertain significance
Malvika Tejura, Yile Chen, Abbye E. McEwen, Ross Stewart +69 more
2026bioRxiv5 citations Open access
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Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A
Shantanu Jain, Marena I. Trinidad, Thanh-Binh Nguyen, Kaiya Jones +65 more
2025Human Genetics4 citations Open access
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An Approach to Identifying and Quantifying Bias in Biomedical Data
M. C. De Paolis Kaluza, Shantanu Jain, P. Radivojac
2022Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing4 citations Open access
Semantic Scholar
Using Association Rules to Understand the Risk of Adverse Pregnancy Outcomes in a Diverse Population
Ho-Yin Chu, R. Ramola, Shantanu Jain, D. Haas +2 more
2022Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing4 citations Open access
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Gene- and domain-aware calibration increases the clinical utility of variant effect predictors
Yile Chen, Shawn Fayer, Shantanu Jain, Mariam Benazouz +11 more
2026bioRxiv3 citations
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An algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics
Yi-Su Peng, Shantanu Jain, P. Radivojac
2024Bioinform.3 citations Open access
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Leveraging Structure for Improved Classification of Grouped Biased Data
Daniel Zeiberg, Shantanu Jain, P. Radivojac
2022AAAI Conference on Artificial Intelligence3 citations Open access
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Identifiability of two‐component skew normal mixtures with one known component
Shantanu Jain, M. Levine, P. Radivojac, M. Trosset
2017Scandinavian Journal of Statistics3 citations Open access
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Are Your Fairness Metrics Accurate? A Semi-Supervised Approach to Improving Fairness Estimates Under Sample Selection Bias
M. C. De Paolis Kaluza, Thulasi Tholeti, Yile Chen, R. Baeza-Yates +2 more
2025Knowledge Discovery and Data Mining2 citations Open access
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A Survey on Face Recognition Techniques in Machine Learning
Shantanu Jain, Vrushaket Chaudhari, Rushikesh Chuadhari, Tanvesh Chavan +1 more
2022International Journal of Scientific Research in Computer Science Engineering and Information Technology2 citations Open access
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Multi-objective prioritization of genes for high-throughput functional assays towards improved clinical variant classification
Yile Chen, Shantanu Jain, Daniel Zeiberg, L. Iakoucheva +3 more
2022Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2 citations Open access
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Smart Self-Checkout System for Supermarkets
Vrushaket Chaudhari, Rushikesh Chaudhari, Amey Shrikant Burgul, Shantanu Jain
20232023 IEEE 3rd International Conference on Technology, Engineering, Management for Societal impact using Marketing, Entrepreneurship and Talent (TEMSMET)1 citations
Semantic Scholar
Gene- and domain-aware calibration increases the clinical utility of variant effect predictors
Yile Chen, Shawn Fayer, Shantanu Jain, Mariam Benazouz +11 more
2026Research Square0 citations Open access
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Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers
Yile Chen, Kyoungyeul Lee, Junwoo Woo, Dong-Wook Kim +19 more
2025Human Genetics0 citations Open access
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Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers
Yile Chen, Kyoungyeul Lee, Junwoo Woo, Dong-Wook Kim +19 more
2024Research Square0 citations Open access
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Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A
Shantanu Jain, Marena I. Trinidad, Thanh-Binh Nguyen, Kaiya Jones +65 more
2024bioRxiv0 citations Open access
Semantic Scholar
Comparative Analysis of Face Recognition Methods Based on Machine Learning
Shantanu Jain, Vrushaket Chaudhari, Rushikesh R. Chaudhari, Tanvesh Chavan +1 more
2022Social Science Research Network0 citations Open access
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Abstract LB152: The Critical Assessment of Genome Interpretation: A community experiment that informs use of methods for germline cancer variant impact prediction
C. Bakolitsa, Shantanu Jain, Gaia Andreoletti, R. Hoskins +3 more
2022Cancer Research0 citations
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The people of the 24ᵗʰ annual Pacific Symposium on Biocomputing in Hawaii
J. B. Byrd, Weixuan Fu, C. Greene, Daniel S. Himmelstein +13 more
20190 citations
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