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T. Murphy · SciRah

Researcher profile · Semantic Scholar

T. Murphy

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T. Murphy — researcher profile on SciRah

h-index: 66
Works: 195
Citations: 18K

Most-cited papers

Spontaneous cortical activity alternates between motifs defined by regional axonal projections
Majid H. Mohajerani, Allen W. Chan, Mostafa Mohsenvand, J. LeDue +6 more
2013Nature Neuroscience381 citations Open access
Semantic Scholar
Stroke and the connectome: how connectivity guides therapeutic intervention.
G. Silasi, T. Murphy
2014Neuron214 citations Open access
Semantic Scholar
Intact skull chronic windows for mesoscopic wide-field imaging in awake mice.
G. Silasi, Dong-Sheng Xiao, M. Vanni, Andrew C. N. Chen +1 more
2016Journal of Neuroscience Methods209 citations Open access
Semantic Scholar
Mesoscale Transcranial Spontaneous Activity Mapping in GCaMP3 Transgenic Mice Reveals Extensive Reciprocal Connections between Areas of Somatomotor Cortex
M. Vanni, T. Murphy
2014Journal of Neuroscience165 citations Open access
Semantic Scholar
Mesoscale Mapping of Mouse Cortex Reveals Frequency-Dependent Cycling between Distinct Macroscale Functional Modules
M. Vanni, Allen W. Chan, M. Balbi, G. Silasi +1 more
2017Journal of Neuroscience149 citations Open access
Semantic Scholar
Mapping synaptic glutamate transporter dysfunction in vivo to regions surrounding Aβ plaques by iGluSnFR two-photon imaging
Jasmin K. Hefendehl, J. LeDue, R. Ko, J. Mahler +2 more
2016Nature Communications140 citations Open access
Semantic Scholar
Optogenetic Stimulation of GABA Neurons can Decrease Local Neuronal Activity While Increasing Cortical Blood Flow
Eitan Anenberg, Allen W. Chan, Yicheng Xie, J. LeDue +1 more
2015Journal of Cerebral Blood Flow and Metabolism121 citations Open access
Semantic Scholar
Mapping cortical mesoscopic networks of single spiking cortical or sub-cortical neurons
Dong-Sheng Xiao, M. Vanni, C. Mitelut, Allen W. Chan +5 more
2017eLife120 citations Open access
Semantic Scholar
Displacement of Sensory Maps and Disorganization of Motor Cortex After Targeted Stroke in Mice
Thomas C Harrison, G. Silasi, J. D. Boyd, T. Murphy
2013Stroke113 citations
Semantic Scholar
Enhancing the Alignment of the Preclinical and Clinical Stroke Recovery Research Pipeline: Consensus-Based Core Recommendations From the Stroke Recovery and Rehabilitation Roundtable Translational Working Group*
D. Corbett, S. Carmichael, T. Murphy, T. Jones +9 more
2017Neurorehabilitation and Neural Repair104 citations Open access
Semantic Scholar
COX-2-Derived Prostaglandin E2 Produced by Pyramidal Neurons Contributes to Neurovascular Coupling in the Rodent Cerebral Cortex
Alexandre Lacroix, Xavier Toussay, Eitan Anenberg, Clotilde Lecrux +11 more
2015Journal of Neuroscience103 citations Open access
Semantic Scholar
Optogenetic Mapping after Stroke Reveals Network-Wide Scaling of Functional Connections and Heterogeneous Recovery of the Peri-Infarct
Diana H. Lim, J. LeDue, Majid H. Mohajerani, T. Murphy
2014Journal of Neuroscience103 citations Open access
Semantic Scholar
Real-time imaging of glutamate clearance reveals normal striatal uptake in Huntington disease mouse models
Matthew P. Parsons, M. Vanni, Cameron L. Woodard, Rujun Kang +2 more
2016Nature Communications98 citations Open access
Semantic Scholar
Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR
Yicheng Xie, Allen W. Chan, A. McGirr, Songchao Xue +3 more
2016Journal of Neuroscience94 citations Open access
Semantic Scholar
Altered Cortical Dynamics and Cognitive Function upon Haploinsufficiency of the Autism-Linked Excitatory Synaptic Suppressor MDGA2.
Steven A. Connor, Ina Ammendrup-Johnsen, Allen W. Chan, Y. Kishimoto +16 more
2016Neuron93 citations Open access
Semantic Scholar
Mesoscale infraslow spontaneous membrane potential fluctuations recapitulate high-frequency activity cortical motifs
Allen W. Chan, Majid H. Mohajerani, J. LeDue, Yu-Tian Wang +1 more
2015Nature Communications92 citations Open access
Semantic Scholar
High-throughput automated home-cage mesoscopic functional imaging of mouse cortex
T. Murphy, J. D. Boyd, Federico Bolaños, M. Vanni +3 more
2016Nature Communications89 citations Open access
Semantic Scholar
Re-Establishment of Cortical Motor Output Maps and Spontaneous Functional Recovery via Spared Dorsolaterally Projecting Corticospinal Neurons after Dorsal Column Spinal Cord Injury in Adult Mice
Brett J. Hilton, Eitan Anenberg, Thomas C Harrison, J. D. Boyd +2 more
2016Journal of Neuroscience85 citations Open access
Semantic Scholar
Enhancing the alignment of the preclinical and clinical stroke recovery research pipeline: Consensus-based core recommendations from the Stroke Recovery and Rehabilitation Roundtable translational working group
D. Corbett, S. Carmichael, T. Murphy, T. Jones +9 more
2017International Journal of Stroke70 citations
Semantic Scholar
Cortical functional hyperconnectivity in a mouse model of depression and selective network effects of ketamine
A. McGirr, J. LeDue, Allen W. Chan, Yicheng Xie +1 more
2017Brain : a journal of neurology58 citations Open access
Semantic Scholar
A Mouse Model of Small-Vessel Disease that Produces Brain-Wide-Identified Microocclusions and Regionally Selective Neuronal Injury
G. Silasi, Jennifer She, J. D. Boyd, Songchao Xue +1 more
2015Journal of Cerebral Blood Flow and Metabolism58 citations Open access
Semantic Scholar
Gamma frequency activation of inhibitory neurons in the acute phase after stroke attenuates vascular and behavioral dysfunction.
M. Balbi, Dong-Sheng Xiao, Max Jativa Vega, Hao Hu +5 more
2021Cell Reports55 citations Open access
Semantic Scholar
Optogenetic approaches for functional mouse brain mapping
Diana H. Lim, J. LeDue, Majid H. Mohajerani, M. Vanni +1 more
2013Frontiers in Neuroscience53 citations Open access
Semantic Scholar
Podocalyxin is required for maintaining blood–brain barrier function during acute inflammation
J. Cait, M. Hughes, Matthew R. Zeglinski, Allen W. Chan +11 more
2019Proceedings of the National Academy of Sciences of the United States of America46 citations Open access
Semantic Scholar
Targeted ischemic stroke induction and mesoscopic imaging assessment of blood flow and ischemic depolarization in awake mice
M. Balbi, M. Vanni, G. Silasi, Yuki Sekino +3 more
2017Neurophotonics44 citations Open access
Semantic Scholar
Neocortical Rebound Depolarization Enhances Visual Perception
Kenta Funayama, G. Minamisawa, N. Matsumoto, H. Ban +4 more
2015PLoS Biology44 citations Open access
Semantic Scholar
Improved methods for chronic light-based motor mapping in mice: automated movement tracking with accelerometers, and chronic EEG recording in a bilateral thin-skull preparation
G. Silasi, J. D. Boyd, J. LeDue, T. Murphy
2013Front. Neural Circuits41 citations Open access
Semantic Scholar
MesoNet allows automated scaling and segmentation of mouse mesoscale cortical maps using machine learning
Dong-Sheng Xiao, Brandon Jonathan Forys, M. Vanni, T. Murphy
2021Nature Communications40 citations Open access
Semantic Scholar
A 3D virtual mouse generates synthetic training data for behavioral analysis
Luis A. Bolaños, Dong-Sheng Xiao, N. Ford, J. LeDue +5 more
2021Nature Methods37 citations Open access
Semantic Scholar
Prolonged Deficits in Parvalbumin Neuron Stimulation-Evoked Network Activity Despite Recovery of Dendritic Structure and Excitability in the Somatosensory Cortex following Global Ischemia in Mice
Yicheng Xie, Shangbin Chen, Yu-Jin Wu, T. Murphy
2014Journal of Neuroscience34 citations Open access
Semantic Scholar
Real-Time Selective Markerless Tracking of Forepaws of Head Fixed Mice Using Deep Neural Networks
Brandon Jonathan Forys, Dong-Sheng Xiao, P. Gupta, T. Murphy
2020eNeuro32 citations Open access
Semantic Scholar
Automated task training and longitudinal monitoring of mouse mesoscale cortical circuits using home cages
T. Murphy, Nicholas J. Michelson, J. D. Boyd, Tony Fong +7 more
2020eLife31 citations Open access
Semantic Scholar
Longitudinal monitoring of mesoscopic cortical activity in a mouse model of microinfarcts reveals dissociations with behavioral and motor function
M. Balbi, M. Vanni, M. J. Vega, G. Silasi +4 more
2019Journal of Cerebral Blood Flow and Metabolism31 citations Open access
Semantic Scholar
An Automated Home-Cage System to Assess Learning and Performance of a Skilled Motor Task in a Mouse Model of Huntington’s Disease
Cameron L. Woodard, Federico Bolaños, J. D. Boyd, G. Silasi +2 more
2017eNeuro30 citations Open access
Semantic Scholar
Ministrokes in Channelrhodopsin-2 Transgenic Mice Reveal Widespread Deficits in Motor Output Despite Maintenance of Cortical Neuronal Excitability
Eitan Anenberg, Pamela Arstikaitis, Y. Niitsu, Thomas C Harrison +4 more
2014Journal of Neuroscience28 citations Open access
Semantic Scholar
Large Scale Cortical Functional Networks Associated with Slow-Wave and Spindle-Burst-Related Spontaneous Activity
D. McVea, T. Murphy, Majid H. Mohajerani
2016Front. Neural Circuits27 citations Open access
Semantic Scholar
Individualized tracking of self-directed motor learning in group-housed mice performing a skilled lever positioning task in the home cage.
G. Silasi, J. D. Boyd, Federico Bolaños, J. LeDue +2 more
2018Journal of Neurophysiology26 citations
Semantic Scholar
Cost effective raspberry pi-based radio frequency identification tagging of mice suitable for automated in vivo imaging.
Federico Bolaños, J. LeDue, T. Murphy
2017Journal of Neuroscience Methods25 citations
Semantic Scholar
Motor maps and the cortical control of movement.
Thomas C Harrison, T. Murphy
2014Current Opinion in Neurobiology25 citations
Semantic Scholar
Comparison between transgenic and AAV-PHP.eB-mediated expression of GCaMP6s using in vivo wide-field functional imaging of brain activity
Nicholas J. Michelson, M. Vanni, T. Murphy
2019Neurophotonics21 citations Open access
Semantic Scholar
Mesoscale brain explorer, a flexible python-based image analysis and visualization tool
D. Haupt, M. Vanni, Federico Bolaños, C. Mitelut +2 more
2017Neurophotonics20 citations Open access
Semantic Scholar
Automated touch sensing in the mouse tapered beam test using Raspberry Pi.
Dirk Jan Ardesch, M. Balbi, T. Murphy
2017Journal of Neuroscience Methods19 citations
Semantic Scholar
Recent progress in translational research on neurovascular and neurodegenerative disorders
H. Demuth, R. Dijkhuizen, T. D. Farr, M. Gelderblom +22 more
2017Restorative Neurology and Neuroscience19 citations Open access
Semantic Scholar
Network analysis of mesoscale optical recordings to assess regional, functional connectivity
Diana H. Lim, J. LeDue, T. Murphy
2015Neurophotonics19 citations Open access
Semantic Scholar
Resistance of Optogenetically Evoked Motor Function to Global Ischemia and Reperfusion in Mouse in Vivo
Yicheng Xie, Shangbin Chen, Eitan Anenberg, T. Murphy
2013Journal of Cerebral Blood Flow and Metabolism18 citations Open access
Semantic Scholar
Automating mouse weighing in group homecages with Raspberry Pi micro-computers.
O. Noorshams, J. D. Boyd, T. Murphy
2017Journal of Neuroscience Methods16 citations
Semantic Scholar
Towards a circuit mechanism for movement tuning in motor cortex
Thomas C Harrison, T. Murphy
2013Front. Neural Circuits16 citations Open access
Semantic Scholar
Stress impacts sensory variability through cortical sensory activity motifs
A. McGirr, J. LeDue, Allen W. Chan, James D. Boyd +2 more
2020Translational Psychiatry15 citations Open access
Semantic Scholar
Two-Photon Imaging of Neuronal Structural Plasticity in Mice during and after Ischemia.
T. Murphy
2015Cold Spring Harbor Protocols15 citations
Semantic Scholar
PyMouseTracks: Flexible Computer Vision and RFID-Based System for Multiple Mouse Tracking and Behavioral Assessment
Tony Fong, Hao Hu, Pankaj Gupta, Braeden Jury +1 more
2023eNeuro14 citations Open access
Semantic Scholar

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J. LeDue×21
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J. LeDue — researcher profile on SciRah
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J. D. Boyd×12
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J. D. Boyd — researcher profile on SciRah
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Allen W. Chan — researcher profile on SciRah

Dong-Sheng Xiao×7

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Yicheng Xie — researcher profile on SciRah

Federico Bolaños×6

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Federico Bolaños — researcher profile on SciRah

Majid H. Mohajerani×5

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Majid H. Mohajerani — researcher profile on SciRah

Eitan Anenberg×5

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Eitan Anenberg — researcher profile on SciRah

Thomas C Harrison×5

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Thomas C Harrison — researcher profile on SciRah